data_2AB8
#
_model_server_result.job_id            BWCAg2x2JG3kQSw357SmcA 
_model_server_result.datetime_utc      '2024-11-26 12:09:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ab8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2003}' 
#
_entry.id    2AB8 
#
_exptl.entry_id    2AB8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2AB8 
_cell.length_a            60.489 
_cell.length_b            61.488 
_cell.length_c            91.605 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AB8 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 288 A ASN 268 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc2 A O THR 289 A THR 269 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc3 A O THR 310 A THR 290 1_555 D NA NA . A NA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc4 A O VAL 368 A VAL 348 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc5 A O HIS 371 A HIS 351 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc6 A O GLY 373 A GLY 353 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc7 C NA NA . A NA 2002 1_555 G O HOH . A HOH 2234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc8 C NA NA . A NA 2002 1_555 G O HOH . A HOH 2235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc9 D NA NA . A NA 2003 1_555 G O HOH . A HOH 2100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc10 D NA NA . A NA 2003 1_555 G O HOH . A HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2AB8 
_atom_sites.fract_transf_matrix[1][1]    0.016532 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 2001 2001 CL CL . 
C 3 NA A 1 2002 2002 NA NA . 
D 3 NA A 1 2003 2003 NA NA . 
E 4 MTP A 1 1001 1001 MTP MTP . 
F 5 ACP A 1 1002 1002 ACP ACP . 
G 6 HOH A 1 2004 2 HOH HOH . 
G 6 HOH A 2 2005 3 HOH HOH . 
G 6 HOH A 3 2006 4 HOH HOH . 
G 6 HOH A 4 2007 6 HOH HOH . 
G 6 HOH A 5 2008 7 HOH HOH . 
G 6 HOH A 6 2009 8 HOH HOH . 
G 6 HOH A 7 2010 9 HOH HOH . 
G 6 HOH A 8 2011 10 HOH HOH . 
G 6 HOH A 9 2012 11 HOH HOH . 
G 6 HOH A 10 2013 12 HOH HOH . 
G 6 HOH A 11 2014 13 HOH HOH . 
G 6 HOH A 12 2015 14 HOH HOH . 
G 6 HOH A 13 2016 15 HOH HOH . 
G 6 HOH A 14 2017 16 HOH HOH . 
G 6 HOH A 15 2018 17 HOH HOH . 
G 6 HOH A 16 2019 18 HOH HOH . 
G 6 HOH A 17 2020 19 HOH HOH . 
G 6 HOH A 18 2021 21 HOH HOH . 
G 6 HOH A 19 2022 22 HOH HOH . 
G 6 HOH A 20 2023 23 HOH HOH . 
G 6 HOH A 21 2024 25 HOH HOH . 
G 6 HOH A 22 2025 26 HOH HOH . 
G 6 HOH A 23 2026 27 HOH HOH . 
G 6 HOH A 24 2027 29 HOH HOH . 
G 6 HOH A 25 2028 30 HOH HOH . 
G 6 HOH A 26 2029 31 HOH HOH . 
G 6 HOH A 27 2030 33 HOH HOH . 
G 6 HOH A 28 2031 34 HOH HOH . 
G 6 HOH A 29 2032 36 HOH HOH . 
G 6 HOH A 30 2033 37 HOH HOH . 
G 6 HOH A 31 2034 39 HOH HOH . 
G 6 HOH A 32 2035 40 HOH HOH . 
G 6 HOH A 33 2036 41 HOH HOH . 
G 6 HOH A 34 2037 42 HOH HOH . 
G 6 HOH A 35 2038 43 HOH HOH . 
G 6 HOH A 36 2039 44 HOH HOH . 
G 6 HOH A 37 2040 45 HOH HOH . 
G 6 HOH A 38 2041 46 HOH HOH . 
G 6 HOH A 39 2042 47 HOH HOH . 
G 6 HOH A 40 2043 48 HOH HOH . 
G 6 HOH A 41 2044 49 HOH HOH . 
G 6 HOH A 42 2045 50 HOH HOH . 
G 6 HOH A 43 2046 51 HOH HOH . 
G 6 HOH A 44 2047 52 HOH HOH . 
G 6 HOH A 45 2048 54 HOH HOH . 
G 6 HOH A 46 2049 55 HOH HOH . 
G 6 HOH A 47 2050 56 HOH HOH . 
G 6 HOH A 48 2051 57 HOH HOH . 
G 6 HOH A 49 2052 58 HOH HOH . 
G 6 HOH A 50 2053 59 HOH HOH . 
G 6 HOH A 51 2054 61 HOH HOH . 
G 6 HOH A 52 2055 62 HOH HOH . 
G 6 HOH A 53 2056 63 HOH HOH . 
G 6 HOH A 54 2057 64 HOH HOH . 
G 6 HOH A 55 2058 65 HOH HOH . 
G 6 HOH A 56 2059 66 HOH HOH . 
G 6 HOH A 57 2060 67 HOH HOH . 
G 6 HOH A 58 2061 68 HOH HOH . 
G 6 HOH A 59 2062 69 HOH HOH . 
G 6 HOH A 60 2063 70 HOH HOH . 
G 6 HOH A 61 2064 71 HOH HOH . 
G 6 HOH A 62 2065 72 HOH HOH . 
G 6 HOH A 63 2066 73 HOH HOH . 
G 6 HOH A 64 2067 74 HOH HOH . 
G 6 HOH A 65 2068 75 HOH HOH . 
G 6 HOH A 66 2069 76 HOH HOH . 
G 6 HOH A 67 2070 77 HOH HOH . 
G 6 HOH A 68 2071 78 HOH HOH . 
G 6 HOH A 69 2072 79 HOH HOH . 
G 6 HOH A 70 2073 80 HOH HOH . 
G 6 HOH A 71 2074 81 HOH HOH . 
G 6 HOH A 72 2075 82 HOH HOH . 
G 6 HOH A 73 2076 83 HOH HOH . 
G 6 HOH A 74 2077 84 HOH HOH . 
G 6 HOH A 75 2078 85 HOH HOH . 
G 6 HOH A 76 2079 86 HOH HOH . 
G 6 HOH A 77 2080 87 HOH HOH . 
G 6 HOH A 78 2081 88 HOH HOH . 
G 6 HOH A 79 2082 89 HOH HOH . 
G 6 HOH A 80 2083 90 HOH HOH . 
G 6 HOH A 81 2084 91 HOH HOH . 
G 6 HOH A 82 2085 92 HOH HOH . 
G 6 HOH A 83 2086 93 HOH HOH . 
G 6 HOH A 84 2087 95 HOH HOH . 
G 6 HOH A 85 2088 96 HOH HOH . 
G 6 HOH A 86 2089 97 HOH HOH . 
G 6 HOH A 87 2090 98 HOH HOH . 
G 6 HOH A 88 2091 99 HOH HOH . 
G 6 HOH A 89 2092 101 HOH HOH . 
G 6 HOH A 90 2093 102 HOH HOH . 
G 6 HOH A 91 2094 103 HOH HOH . 
G 6 HOH A 92 2095 105 HOH HOH . 
G 6 HOH A 93 2096 106 HOH HOH . 
G 6 HOH A 94 2097 107 HOH HOH . 
G 6 HOH A 95 2098 108 HOH HOH . 
G 6 HOH A 96 2099 109 HOH HOH . 
G 6 HOH A 97 2100 110 HOH HOH . 
G 6 HOH A 98 2101 111 HOH HOH . 
G 6 HOH A 99 2102 112 HOH HOH . 
G 6 HOH A 100 2103 113 HOH HOH . 
G 6 HOH A 101 2104 114 HOH HOH . 
G 6 HOH A 102 2105 115 HOH HOH . 
G 6 HOH A 103 2106 116 HOH HOH . 
G 6 HOH A 104 2107 117 HOH HOH . 
G 6 HOH A 105 2108 118 HOH HOH . 
G 6 HOH A 106 2109 119 HOH HOH . 
G 6 HOH A 107 2110 120 HOH HOH . 
G 6 HOH A 108 2111 121 HOH HOH . 
G 6 HOH A 109 2112 122 HOH HOH . 
G 6 HOH A 110 2113 123 HOH HOH . 
G 6 HOH A 111 2114 124 HOH HOH . 
G 6 HOH A 112 2115 125 HOH HOH . 
G 6 HOH A 113 2116 127 HOH HOH . 
G 6 HOH A 114 2117 128 HOH HOH . 
G 6 HOH A 115 2118 129 HOH HOH . 
G 6 HOH A 116 2119 130 HOH HOH . 
G 6 HOH A 117 2120 131 HOH HOH . 
G 6 HOH A 118 2121 133 HOH HOH . 
G 6 HOH A 119 2122 134 HOH HOH . 
G 6 HOH A 120 2123 136 HOH HOH . 
G 6 HOH A 121 2124 137 HOH HOH . 
G 6 HOH A 122 2125 138 HOH HOH . 
G 6 HOH A 123 2126 139 HOH HOH . 
G 6 HOH A 124 2127 140 HOH HOH . 
G 6 HOH A 125 2128 142 HOH HOH . 
G 6 HOH A 126 2129 143 HOH HOH . 
G 6 HOH A 127 2130 144 HOH HOH . 
G 6 HOH A 128 2131 145 HOH HOH . 
G 6 HOH A 129 2132 146 HOH HOH . 
G 6 HOH A 130 2133 147 HOH HOH . 
G 6 HOH A 131 2134 148 HOH HOH . 
G 6 HOH A 132 2135 149 HOH HOH . 
G 6 HOH A 133 2136 150 HOH HOH . 
G 6 HOH A 134 2137 151 HOH HOH . 
G 6 HOH A 135 2138 152 HOH HOH . 
G 6 HOH A 136 2139 153 HOH HOH . 
G 6 HOH A 137 2140 154 HOH HOH . 
G 6 HOH A 138 2141 155 HOH HOH . 
G 6 HOH A 139 2142 156 HOH HOH . 
G 6 HOH A 140 2143 157 HOH HOH . 
G 6 HOH A 141 2144 161 HOH HOH . 
G 6 HOH A 142 2145 162 HOH HOH . 
G 6 HOH A 143 2146 163 HOH HOH . 
G 6 HOH A 144 2147 164 HOH HOH . 
G 6 HOH A 145 2148 165 HOH HOH . 
G 6 HOH A 146 2149 166 HOH HOH . 
G 6 HOH A 147 2150 167 HOH HOH . 
G 6 HOH A 148 2151 168 HOH HOH . 
G 6 HOH A 149 2152 169 HOH HOH . 
G 6 HOH A 150 2153 170 HOH HOH . 
G 6 HOH A 151 2154 171 HOH HOH . 
G 6 HOH A 152 2155 172 HOH HOH . 
G 6 HOH A 153 2156 173 HOH HOH . 
G 6 HOH A 154 2157 174 HOH HOH . 
G 6 HOH A 155 2158 175 HOH HOH . 
G 6 HOH A 156 2159 176 HOH HOH . 
G 6 HOH A 157 2160 178 HOH HOH . 
G 6 HOH A 158 2161 180 HOH HOH . 
G 6 HOH A 159 2162 181 HOH HOH . 
G 6 HOH A 160 2163 182 HOH HOH . 
G 6 HOH A 161 2164 183 HOH HOH . 
G 6 HOH A 162 2165 184 HOH HOH . 
G 6 HOH A 163 2166 185 HOH HOH . 
G 6 HOH A 164 2167 186 HOH HOH . 
G 6 HOH A 165 2168 187 HOH HOH . 
G 6 HOH A 166 2169 189 HOH HOH . 
G 6 HOH A 167 2170 190 HOH HOH . 
G 6 HOH A 168 2171 192 HOH HOH . 
G 6 HOH A 169 2172 193 HOH HOH . 
G 6 HOH A 170 2173 194 HOH HOH . 
G 6 HOH A 171 2174 196 HOH HOH . 
G 6 HOH A 172 2175 197 HOH HOH . 
G 6 HOH A 173 2176 198 HOH HOH . 
G 6 HOH A 174 2177 199 HOH HOH . 
G 6 HOH A 175 2178 201 HOH HOH . 
G 6 HOH A 176 2179 202 HOH HOH . 
G 6 HOH A 177 2180 203 HOH HOH . 
G 6 HOH A 178 2181 204 HOH HOH . 
G 6 HOH A 179 2182 205 HOH HOH . 
G 6 HOH A 180 2183 206 HOH HOH . 
G 6 HOH A 181 2184 207 HOH HOH . 
G 6 HOH A 182 2185 208 HOH HOH . 
G 6 HOH A 183 2186 209 HOH HOH . 
G 6 HOH A 184 2187 212 HOH HOH . 
G 6 HOH A 185 2188 213 HOH HOH . 
G 6 HOH A 186 2189 215 HOH HOH . 
G 6 HOH A 187 2190 217 HOH HOH . 
G 6 HOH A 188 2191 218 HOH HOH . 
G 6 HOH A 189 2192 226 HOH HOH . 
G 6 HOH A 190 2193 231 HOH HOH . 
G 6 HOH A 191 2194 235 HOH HOH . 
G 6 HOH A 192 2195 238 HOH HOH . 
G 6 HOH A 193 2196 241 HOH HOH . 
G 6 HOH A 194 2197 247 HOH HOH . 
G 6 HOH A 195 2198 248 HOH HOH . 
G 6 HOH A 196 2199 249 HOH HOH . 
G 6 HOH A 197 2200 250 HOH HOH . 
G 6 HOH A 198 2201 252 HOH HOH . 
G 6 HOH A 199 2202 253 HOH HOH . 
G 6 HOH A 200 2203 255 HOH HOH . 
G 6 HOH A 201 2204 256 HOH HOH . 
G 6 HOH A 202 2205 258 HOH HOH . 
G 6 HOH A 203 2206 259 HOH HOH . 
G 6 HOH A 204 2207 261 HOH HOH . 
G 6 HOH A 205 2208 262 HOH HOH . 
G 6 HOH A 206 2209 263 HOH HOH . 
G 6 HOH A 207 2210 267 HOH HOH . 
G 6 HOH A 208 2211 268 HOH HOH . 
G 6 HOH A 209 2212 271 HOH HOH . 
G 6 HOH A 210 2213 272 HOH HOH . 
G 6 HOH A 211 2214 273 HOH HOH . 
G 6 HOH A 212 2215 274 HOH HOH . 
G 6 HOH A 213 2216 276 HOH HOH . 
G 6 HOH A 214 2217 277 HOH HOH . 
G 6 HOH A 215 2218 280 HOH HOH . 
G 6 HOH A 216 2219 284 HOH HOH . 
G 6 HOH A 217 2220 285 HOH HOH . 
G 6 HOH A 218 2221 297 HOH HOH . 
G 6 HOH A 219 2222 300 HOH HOH . 
G 6 HOH A 220 2223 301 HOH HOH . 
G 6 HOH A 221 2224 307 HOH HOH . 
G 6 HOH A 222 2225 311 HOH HOH . 
G 6 HOH A 223 2226 316 HOH HOH . 
G 6 HOH A 224 2227 317 HOH HOH . 
G 6 HOH A 225 2228 318 HOH HOH . 
G 6 HOH A 226 2229 319 HOH HOH . 
G 6 HOH A 227 2230 320 HOH HOH . 
G 6 HOH A 228 2231 321 HOH HOH . 
G 6 HOH A 229 2232 322 HOH HOH . 
G 6 HOH A 230 2233 324 HOH HOH . 
G 6 HOH A 231 2234 325 HOH HOH . 
G 6 HOH A 232 2235 326 HOH HOH . 
G 6 HOH A 233 2236 327 HOH HOH . 
G 6 HOH A 234 2237 328 HOH HOH . 
G 6 HOH A 235 2238 329 HOH HOH . 
G 6 HOH A 236 2239 330 HOH HOH . 
G 6 HOH A 237 2240 331 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -8.761 
_atom_site.Cartn_y               -65.523 
_atom_site.Cartn_z               -128.66 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.24 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           2003 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#