data_2ABK # _model_server_result.job_id 0ELvOAIpelMNbiCKiXoZAQ _model_server_result.datetime_utc '2024-10-19 05:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2abk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2ABK # _exptl.entry_id 2ABK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ABK _cell.length_a 48.5 _cell.length_b 65.8 _cell.length_c 86.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ABK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 187 A CYS 187 1_555 B FE2 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 A SG CYS 194 A CYS 194 1_555 B FE3 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 A SG CYS 197 A CYS 197 1_555 B FE1 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A SG CYS 203 A CYS 203 1_555 B FE4 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 2ABK _atom_sites.fract_transf_matrix[1][1] 0.020619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 300 300 SF4 FS4 . C 3 HOH A 1 305 305 HOH HOH . C 3 HOH A 2 307 307 HOH HOH . C 3 HOH A 3 308 308 HOH HOH . C 3 HOH A 4 309 309 HOH HOH . C 3 HOH A 5 310 310 HOH HOH . C 3 HOH A 6 311 311 HOH HOH . C 3 HOH A 7 312 312 HOH HOH . C 3 HOH A 8 314 314 HOH HOH . C 3 HOH A 9 315 315 HOH HOH . C 3 HOH A 10 316 316 HOH HOH . C 3 HOH A 11 317 317 HOH HOH . C 3 HOH A 12 318 318 HOH HOH . C 3 HOH A 13 320 320 HOH HOH . C 3 HOH A 14 321 321 HOH HOH . C 3 HOH A 15 322 322 HOH HOH . C 3 HOH A 16 323 323 HOH HOH . C 3 HOH A 17 327 327 HOH HOH . C 3 HOH A 18 328 328 HOH HOH . C 3 HOH A 19 330 330 HOH HOH . C 3 HOH A 20 331 331 HOH HOH . C 3 HOH A 21 332 332 HOH HOH . C 3 HOH A 22 333 333 HOH HOH . C 3 HOH A 23 335 335 HOH HOH . C 3 HOH A 24 336 336 HOH HOH . C 3 HOH A 25 337 337 HOH HOH . C 3 HOH A 26 338 338 HOH HOH . C 3 HOH A 27 339 339 HOH HOH . C 3 HOH A 28 340 340 HOH HOH . C 3 HOH A 29 341 341 HOH HOH . C 3 HOH A 30 342 342 HOH HOH . C 3 HOH A 31 345 345 HOH HOH . C 3 HOH A 32 346 346 HOH HOH . C 3 HOH A 33 347 347 HOH HOH . C 3 HOH A 34 348 348 HOH HOH . C 3 HOH A 35 350 350 HOH HOH . C 3 HOH A 36 353 353 HOH HOH . C 3 HOH A 37 355 355 HOH HOH . C 3 HOH A 38 358 358 HOH HOH . C 3 HOH A 39 360 360 HOH HOH . C 3 HOH A 40 361 361 HOH HOH . C 3 HOH A 41 362 362 HOH HOH . C 3 HOH A 42 363 363 HOH HOH . C 3 HOH A 43 364 364 HOH HOH . C 3 HOH A 44 368 368 HOH HOH . C 3 HOH A 45 369 369 HOH HOH . C 3 HOH A 46 372 372 HOH HOH . C 3 HOH A 47 373 373 HOH HOH . C 3 HOH A 48 377 377 HOH HOH . C 3 HOH A 49 378 378 HOH HOH . C 3 HOH A 50 379 379 HOH HOH . C 3 HOH A 51 381 381 HOH HOH . C 3 HOH A 52 382 382 HOH HOH . C 3 HOH A 53 383 383 HOH HOH . C 3 HOH A 54 387 387 HOH HOH . C 3 HOH A 55 388 388 HOH HOH . C 3 HOH A 56 394 394 HOH HOH . C 3 HOH A 57 395 395 HOH HOH . C 3 HOH A 58 396 396 HOH HOH . C 3 HOH A 59 398 398 HOH HOH . C 3 HOH A 60 399 399 HOH HOH . C 3 HOH A 61 402 402 HOH HOH . C 3 HOH A 62 406 406 HOH HOH . C 3 HOH A 63 407 407 HOH HOH . C 3 HOH A 64 412 412 HOH HOH . C 3 HOH A 65 413 413 HOH HOH . C 3 HOH A 66 417 417 HOH HOH . C 3 HOH A 67 420 420 HOH HOH . C 3 HOH A 68 421 421 HOH HOH . C 3 HOH A 69 423 423 HOH HOH . C 3 HOH A 70 424 424 HOH HOH . C 3 HOH A 71 433 433 HOH HOH . C 3 HOH A 72 434 434 HOH HOH . C 3 HOH A 73 435 435 HOH HOH . C 3 HOH A 74 439 439 HOH HOH . C 3 HOH A 75 440 440 HOH HOH . C 3 HOH A 76 446 446 HOH HOH . C 3 HOH A 77 449 449 HOH HOH . C 3 HOH A 78 450 450 HOH HOH . C 3 HOH A 79 452 452 HOH HOH . C 3 HOH A 80 460 460 HOH HOH . C 3 HOH A 81 466 466 HOH HOH . C 3 HOH A 82 475 475 HOH HOH . C 3 HOH A 83 478 478 HOH HOH . C 3 HOH A 84 488 488 HOH HOH . C 3 HOH A 85 490 490 HOH HOH . C 3 HOH A 86 496 496 HOH HOH . C 3 HOH A 87 498 498 HOH HOH . C 3 HOH A 88 505 505 HOH HOH . C 3 HOH A 89 512 512 HOH HOH . C 3 HOH A 90 520 520 HOH HOH . C 3 HOH A 91 521 521 HOH HOH . C 3 HOH A 92 524 524 HOH HOH . C 3 HOH A 93 525 525 HOH HOH . C 3 HOH A 94 526 526 HOH HOH . C 3 HOH A 95 527 527 HOH HOH . C 3 HOH A 96 529 529 HOH HOH . C 3 HOH A 97 530 530 HOH HOH . C 3 HOH A 98 532 532 HOH HOH . C 3 HOH A 99 534 534 HOH HOH . C 3 HOH A 100 536 536 HOH HOH . C 3 HOH A 101 537 537 HOH HOH . C 3 HOH A 102 539 539 HOH HOH . C 3 HOH A 103 544 544 HOH HOH . C 3 HOH A 104 545 545 HOH HOH . C 3 HOH A 105 547 547 HOH HOH . C 3 HOH A 106 548 548 HOH HOH . C 3 HOH A 107 557 557 HOH HOH . C 3 HOH A 108 560 560 HOH HOH . C 3 HOH A 109 561 561 HOH HOH . C 3 HOH A 110 562 562 HOH HOH . C 3 HOH A 111 565 565 HOH HOH . C 3 HOH A 112 574 574 HOH HOH . C 3 HOH A 113 586 586 HOH HOH . C 3 HOH A 114 592 592 HOH HOH . C 3 HOH A 115 601 601 HOH HOH . C 3 HOH A 116 604 604 HOH HOH . C 3 HOH A 117 632 632 HOH HOH . C 3 HOH A 118 637 637 HOH HOH . C 3 HOH A 119 641 641 HOH HOH . C 3 HOH A 120 643 643 HOH HOH . C 3 HOH A 121 644 644 HOH HOH . C 3 HOH A 122 645 645 HOH HOH . C 3 HOH A 123 646 646 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 23.766 16.859 51.334 1 16.04 ? FE1 SF4 300 A 1 HETATM 2 FE FE2 SF4 . . . B 2 26.352 17.275 50.512 1 14.77 ? FE2 SF4 300 A 1 HETATM 3 FE FE3 SF4 . . . B 2 25.556 18.213 52.958 1 17.24 ? FE3 SF4 300 A 1 HETATM 4 FE FE4 SF4 . . . B 2 25.811 15.501 52.535 1 17.34 ? FE4 SF4 300 A 1 HETATM 5 S S1 SF4 . . . B 2 27.495 17.048 52.51 1 17.17 ? S1 SF4 300 A 1 HETATM 6 S S2 SF4 . . . B 2 24.093 16.545 53.606 1 16.43 ? S2 SF4 300 A 1 HETATM 7 S S3 SF4 . . . B 2 25.122 15.319 50.314 1 15.51 ? S3 SF4 300 A 1 HETATM 8 S S4 SF4 . . . B 2 24.757 18.884 50.872 1 15.09 ? S4 SF4 300 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #