data_2ABQ # _model_server_result.job_id Q6QVSORRtEwVVbzw-OqEFA _model_server_result.datetime_utc '2024-11-23 16:54:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2abq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":308}' # _entry.id 2ABQ # _exptl.entry_id 2ABQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.38 _cell.angle_beta 87.28 _cell.angle_gamma 82.14 _cell.entry_id 2ABQ _cell.length_a 42.62 _cell.length_b 48.71 _cell.length_c 79.05 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ABQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ALA 138 A ALA 138 1_555 A N MSE 139 A MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MSE 139 A MSE 139 1_555 A N PRO 140 A PRO 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C SER 146 A SER 146 1_555 A N MSE 147 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C MSE 147 A MSE 147 1_555 A N THR 148 A THR 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C GLY 230 A GLY 230 1_555 A N MSE 231 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C MSE 231 A MSE 231 1_555 A N PHE 232 A PHE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 1 B MSE 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C ALA 138 B ALA 138 1_555 B N MSE 139 B MSE 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 139 B MSE 139 1_555 B N PRO 140 B PRO 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale11 B C SER 146 B SER 146 1_555 B N MSE 147 B MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 B C MSE 147 B MSE 147 1_555 B N THR 148 B THR 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 B C GLY 230 B GLY 230 1_555 B N MSE 231 B MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 231 B MSE 231 1_555 B N PHE 232 B PHE 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 279 n n P O2 PO4 sing 280 n n P O3 PO4 sing 281 n n P O4 PO4 sing 282 n n # _atom_sites.entry_id 2ABQ _atom_sites.fract_transf_matrix[1][1] 0.023463 _atom_sites.fract_transf_matrix[1][2] -0.003239 _atom_sites.fract_transf_matrix[1][3] -0.000708 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020724 _atom_sites.fract_transf_matrix[2][3] -0.002663 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 307 307 PO4 PO4 . D 2 PO4 A 1 308 308 PO4 PO4 . E 2 PO4 A 1 309 309 PO4 PO4 . F 2 PO4 B 1 407 307 PO4 PO4 . G 3 HOH A 1 310 1 HOH TIP . G 3 HOH A 2 311 3 HOH TIP . G 3 HOH A 3 312 5 HOH TIP . G 3 HOH A 4 313 6 HOH TIP . G 3 HOH A 5 314 7 HOH TIP . G 3 HOH A 6 315 11 HOH TIP . G 3 HOH A 7 316 12 HOH TIP . G 3 HOH A 8 317 14 HOH TIP . G 3 HOH A 9 318 17 HOH TIP . G 3 HOH A 10 319 18 HOH TIP . G 3 HOH A 11 320 21 HOH TIP . G 3 HOH A 12 321 22 HOH TIP . G 3 HOH A 13 322 24 HOH TIP . G 3 HOH A 14 323 26 HOH TIP . G 3 HOH A 15 324 27 HOH TIP . G 3 HOH A 16 325 28 HOH TIP . G 3 HOH A 17 326 30 HOH TIP . G 3 HOH A 18 327 32 HOH TIP . G 3 HOH A 19 328 34 HOH TIP . G 3 HOH A 20 329 36 HOH TIP . G 3 HOH A 21 330 39 HOH TIP . G 3 HOH A 22 331 41 HOH TIP . G 3 HOH A 23 332 42 HOH TIP . G 3 HOH A 24 333 43 HOH TIP . G 3 HOH A 25 334 45 HOH TIP . G 3 HOH A 26 335 48 HOH TIP . G 3 HOH A 27 336 50 HOH TIP . G 3 HOH A 28 337 51 HOH TIP . G 3 HOH A 29 338 53 HOH TIP . G 3 HOH A 30 339 55 HOH TIP . G 3 HOH A 31 340 56 HOH TIP . G 3 HOH A 32 341 57 HOH TIP . G 3 HOH A 33 342 58 HOH TIP . G 3 HOH A 34 343 62 HOH TIP . G 3 HOH A 35 344 64 HOH TIP . G 3 HOH A 36 345 66 HOH TIP . G 3 HOH A 37 346 67 HOH TIP . G 3 HOH A 38 347 69 HOH TIP . G 3 HOH A 39 348 70 HOH TIP . G 3 HOH A 40 349 73 HOH TIP . G 3 HOH A 41 350 76 HOH TIP . G 3 HOH A 42 351 83 HOH TIP . G 3 HOH A 43 352 84 HOH TIP . G 3 HOH A 44 353 91 HOH TIP . G 3 HOH A 45 354 92 HOH TIP . G 3 HOH A 46 355 93 HOH TIP . G 3 HOH A 47 356 94 HOH TIP . G 3 HOH A 48 357 95 HOH TIP . G 3 HOH A 49 358 98 HOH TIP . G 3 HOH A 50 359 99 HOH TIP . G 3 HOH A 51 360 101 HOH TIP . G 3 HOH A 52 361 102 HOH TIP . G 3 HOH A 53 362 103 HOH TIP . G 3 HOH A 54 363 104 HOH TIP . G 3 HOH A 55 364 106 HOH TIP . G 3 HOH A 56 365 107 HOH TIP . G 3 HOH A 57 366 109 HOH TIP . G 3 HOH A 58 367 113 HOH TIP . G 3 HOH A 59 368 115 HOH TIP . G 3 HOH A 60 369 117 HOH TIP . G 3 HOH A 61 370 118 HOH TIP . G 3 HOH A 62 371 119 HOH TIP . H 3 HOH B 1 408 10 HOH TIP . H 3 HOH B 2 409 13 HOH TIP . H 3 HOH B 3 410 15 HOH TIP . H 3 HOH B 4 411 19 HOH TIP . H 3 HOH B 5 412 20 HOH TIP . H 3 HOH B 6 413 23 HOH TIP . H 3 HOH B 7 414 25 HOH TIP . H 3 HOH B 8 415 29 HOH TIP . H 3 HOH B 9 416 31 HOH TIP . H 3 HOH B 10 417 33 HOH TIP . H 3 HOH B 11 418 35 HOH TIP . H 3 HOH B 12 419 37 HOH TIP . H 3 HOH B 13 420 38 HOH TIP . H 3 HOH B 14 421 40 HOH TIP . H 3 HOH B 15 422 44 HOH TIP . H 3 HOH B 16 423 47 HOH TIP . H 3 HOH B 17 424 49 HOH TIP . H 3 HOH B 18 425 52 HOH TIP . H 3 HOH B 19 426 54 HOH TIP . H 3 HOH B 20 427 60 HOH TIP . H 3 HOH B 21 428 63 HOH TIP . H 3 HOH B 22 429 65 HOH TIP . H 3 HOH B 23 430 71 HOH TIP . H 3 HOH B 24 431 72 HOH TIP . H 3 HOH B 25 432 74 HOH TIP . H 3 HOH B 26 433 75 HOH TIP . H 3 HOH B 27 434 79 HOH TIP . H 3 HOH B 28 435 80 HOH TIP . H 3 HOH B 29 436 81 HOH TIP . H 3 HOH B 30 437 82 HOH TIP . H 3 HOH B 31 438 85 HOH TIP . H 3 HOH B 32 439 86 HOH TIP . H 3 HOH B 33 440 87 HOH TIP . H 3 HOH B 34 441 88 HOH TIP . H 3 HOH B 35 442 89 HOH TIP . H 3 HOH B 36 443 90 HOH TIP . H 3 HOH B 37 444 97 HOH TIP . H 3 HOH B 38 445 100 HOH TIP . H 3 HOH B 39 446 108 HOH TIP . H 3 HOH B 40 447 110 HOH TIP . H 3 HOH B 41 448 111 HOH TIP . H 3 HOH B 42 449 112 HOH TIP . H 3 HOH B 43 450 114 HOH TIP . H 3 HOH B 44 451 116 HOH TIP . H 3 HOH B 45 452 120 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 -4.715 -0.563 36.592 1 84.23 ? P PO4 308 A 1 HETATM 2 O O1 PO4 . . . D 2 -4.026 -0.656 37.908 1 83.94 ? O1 PO4 308 A 1 HETATM 3 O O2 PO4 . . . D 2 -4.987 0.865 36.28 1 83.36 ? O2 PO4 308 A 1 HETATM 4 O O3 PO4 . . . D 2 -3.847 -1.145 35.537 1 83.36 ? O3 PO4 308 A 1 HETATM 5 O O4 PO4 . . . D 2 -5.994 -1.312 36.648 1 83.86 ? O4 PO4 308 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 5 #