data_2ACU # _model_server_result.job_id zaL4aVkZo0yHQWIqBrUVLQ _model_server_result.datetime_utc '2024-12-03 14:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2acu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":316}' # _entry.id 2ACU # _exptl.entry_id 2ACU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ACU _cell.length_a 49.99 _cell.length_b 67.14 _cell.length_c 92.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ACU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 257 n n PA O2A NAP sing 258 n n PA O5B NAP sing 259 n n PA O3 NAP sing 260 n n O2A HOA2 NAP sing 261 n n O5B C5B NAP sing 262 n n C5B C4B NAP sing 263 n n C5B H51A NAP sing 264 n n C5B H52A NAP sing 265 n n C4B O4B NAP sing 266 n n C4B C3B NAP sing 267 n n C4B H4B NAP sing 268 n n O4B C1B NAP sing 269 n n C3B O3B NAP sing 270 n n C3B C2B NAP sing 271 n n C3B H3B NAP sing 272 n n O3B HO3A NAP sing 273 n n C2B O2B NAP sing 274 n n C2B C1B NAP sing 275 n n C2B H2B NAP sing 276 n n O2B P2B NAP sing 277 n n C1B N9A NAP sing 278 n n C1B H1B NAP sing 279 n n N9A C8A NAP sing 280 n y N9A C4A NAP sing 281 n y C8A N7A NAP doub 282 n y C8A H8A NAP sing 283 n n N7A C5A NAP sing 284 n y C5A C6A NAP sing 285 n y C5A C4A NAP doub 286 n y C6A N6A NAP sing 287 n n C6A N1A NAP doub 288 n y N6A H61A NAP sing 289 n n N6A H62A NAP sing 290 n n N1A C2A NAP sing 291 n y C2A N3A NAP doub 292 n y C2A H2A NAP sing 293 n n N3A C4A NAP sing 294 n y O3 PN NAP sing 295 n n PN O1N NAP doub 296 n n PN O2N NAP sing 297 n n PN O5D NAP sing 298 n n O5D C5D NAP sing 299 n n C5D C4D NAP sing 300 n n C5D H51N NAP sing 301 n n C5D H52N NAP sing 302 n n C4D O4D NAP sing 303 n n C4D C3D NAP sing 304 n n C4D H4D NAP sing 305 n n O4D C1D NAP sing 306 n n C3D O3D NAP sing 307 n n C3D C2D NAP sing 308 n n C3D H3D NAP sing 309 n n O3D HO3N NAP sing 310 n n C2D O2D NAP sing 311 n n C2D C1D NAP sing 312 n n C2D H2D NAP sing 313 n n O2D HO2N NAP sing 314 n n C1D N1N NAP sing 315 n n C1D H1D NAP sing 316 n n N1N C2N NAP sing 317 n y N1N C6N NAP doub 318 n y C2N C3N NAP doub 319 n y C2N H2N NAP sing 320 n n C3N C7N NAP sing 321 n n C3N C4N NAP sing 322 n y C7N O7N NAP doub 323 n n C7N N7N NAP sing 324 n n N7N H71N NAP sing 325 n n N7N H72N NAP sing 326 n n C4N C5N NAP doub 327 n y C4N H4N NAP sing 328 n n C5N C6N NAP sing 329 n y C5N H5N NAP sing 330 n n C6N H6N NAP sing 331 n n P2B O1X NAP doub 332 n n P2B O2X NAP sing 333 n n P2B O3X NAP sing 334 n n O2X HOP2 NAP sing 335 n n O3X HOP3 NAP sing 336 n n # _atom_sites.entry_id 2ACU _atom_sites.fract_transf_matrix[1][1] 0.020004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 316 316 NAP NAP . C 3 CIT A 1 317 317 CIT CIT . D 4 HOH A 1 318 318 HOH HOH . D 4 HOH A 2 319 319 HOH HOH . D 4 HOH A 3 320 320 HOH HOH . D 4 HOH A 4 321 321 HOH HOH . D 4 HOH A 5 322 322 HOH HOH . D 4 HOH A 6 323 323 HOH HOH . D 4 HOH A 7 324 324 HOH HOH . D 4 HOH A 8 325 325 HOH HOH . D 4 HOH A 9 326 326 HOH HOH . D 4 HOH A 10 327 327 HOH HOH . D 4 HOH A 11 328 328 HOH HOH . D 4 HOH A 12 329 329 HOH HOH . D 4 HOH A 13 330 330 HOH HOH . D 4 HOH A 14 331 331 HOH HOH . D 4 HOH A 15 332 332 HOH HOH . D 4 HOH A 16 333 333 HOH HOH . D 4 HOH A 17 334 334 HOH HOH . D 4 HOH A 18 335 335 HOH HOH . D 4 HOH A 19 336 336 HOH HOH . D 4 HOH A 20 337 337 HOH HOH . D 4 HOH A 21 338 338 HOH HOH . D 4 HOH A 22 339 339 HOH HOH . D 4 HOH A 23 340 340 HOH HOH . D 4 HOH A 24 341 341 HOH HOH . D 4 HOH A 25 342 342 HOH HOH . D 4 HOH A 26 343 343 HOH HOH . D 4 HOH A 27 344 344 HOH HOH . D 4 HOH A 28 345 345 HOH HOH . D 4 HOH A 29 346 346 HOH HOH . D 4 HOH A 30 347 347 HOH HOH . D 4 HOH A 31 348 348 HOH HOH . D 4 HOH A 32 349 349 HOH HOH . D 4 HOH A 33 350 350 HOH HOH . D 4 HOH A 34 351 351 HOH HOH . D 4 HOH A 35 352 352 HOH HOH . D 4 HOH A 36 353 353 HOH HOH . D 4 HOH A 37 354 354 HOH HOH . D 4 HOH A 38 355 355 HOH HOH . D 4 HOH A 39 356 356 HOH HOH . D 4 HOH A 40 357 357 HOH HOH . D 4 HOH A 41 358 358 HOH HOH . D 4 HOH A 42 359 359 HOH HOH . D 4 HOH A 43 360 360 HOH HOH . D 4 HOH A 44 361 361 HOH HOH . D 4 HOH A 45 362 362 HOH HOH . D 4 HOH A 46 363 363 HOH HOH . D 4 HOH A 47 364 364 HOH HOH . D 4 HOH A 48 365 365 HOH HOH . D 4 HOH A 49 366 366 HOH HOH . D 4 HOH A 50 367 367 HOH HOH . D 4 HOH A 51 368 368 HOH HOH . D 4 HOH A 52 369 369 HOH HOH . D 4 HOH A 53 370 370 HOH HOH . D 4 HOH A 54 371 371 HOH HOH . D 4 HOH A 55 372 372 HOH HOH . D 4 HOH A 56 373 373 HOH HOH . D 4 HOH A 57 374 374 HOH HOH . D 4 HOH A 58 375 375 HOH HOH . D 4 HOH A 59 376 376 HOH HOH . D 4 HOH A 60 377 377 HOH HOH . D 4 HOH A 61 378 378 HOH HOH . D 4 HOH A 62 379 379 HOH HOH . D 4 HOH A 63 380 380 HOH HOH . D 4 HOH A 64 381 381 HOH HOH . D 4 HOH A 65 382 382 HOH HOH . D 4 HOH A 66 383 383 HOH HOH . D 4 HOH A 67 384 384 HOH HOH . D 4 HOH A 68 385 385 HOH HOH . D 4 HOH A 69 386 386 HOH HOH . D 4 HOH A 70 387 387 HOH HOH . D 4 HOH A 71 388 388 HOH HOH . D 4 HOH A 72 389 389 HOH HOH . D 4 HOH A 73 390 390 HOH HOH . D 4 HOH A 74 391 391 HOH HOH . D 4 HOH A 75 392 392 HOH HOH . D 4 HOH A 76 393 393 HOH HOH . D 4 HOH A 77 394 394 HOH HOH . D 4 HOH A 78 395 395 HOH HOH . D 4 HOH A 79 396 396 HOH HOH . D 4 HOH A 80 397 397 HOH HOH . D 4 HOH A 81 398 398 HOH HOH . D 4 HOH A 82 399 399 HOH HOH . D 4 HOH A 83 400 400 HOH HOH . D 4 HOH A 84 401 401 HOH HOH . D 4 HOH A 85 402 402 HOH HOH . D 4 HOH A 86 403 403 HOH HOH . D 4 HOH A 87 404 404 HOH HOH . D 4 HOH A 88 405 405 HOH HOH . D 4 HOH A 89 406 406 HOH HOH . D 4 HOH A 90 407 407 HOH HOH . D 4 HOH A 91 408 408 HOH HOH . D 4 HOH A 92 409 409 HOH HOH . D 4 HOH A 93 410 410 HOH HOH . D 4 HOH A 94 411 411 HOH HOH . D 4 HOH A 95 412 412 HOH HOH . D 4 HOH A 96 413 413 HOH HOH . D 4 HOH A 97 414 414 HOH HOH . D 4 HOH A 98 415 415 HOH HOH . D 4 HOH A 99 416 416 HOH HOH . D 4 HOH A 100 417 417 HOH HOH . D 4 HOH A 101 418 418 HOH HOH . D 4 HOH A 102 419 419 HOH HOH . D 4 HOH A 103 420 420 HOH HOH . D 4 HOH A 104 421 421 HOH HOH . D 4 HOH A 105 422 422 HOH HOH . D 4 HOH A 106 423 423 HOH HOH . D 4 HOH A 107 424 424 HOH HOH . D 4 HOH A 108 425 425 HOH HOH . D 4 HOH A 109 426 426 HOH HOH . D 4 HOH A 110 427 427 HOH HOH . D 4 HOH A 111 428 428 HOH HOH . D 4 HOH A 112 429 429 HOH HOH . D 4 HOH A 113 430 430 HOH HOH . D 4 HOH A 114 431 431 HOH HOH . D 4 HOH A 115 432 432 HOH HOH . D 4 HOH A 116 433 433 HOH HOH . D 4 HOH A 117 434 434 HOH HOH . D 4 HOH A 118 435 435 HOH HOH . D 4 HOH A 119 436 436 HOH HOH . D 4 HOH A 120 437 437 HOH HOH . D 4 HOH A 121 438 438 HOH HOH . D 4 HOH A 122 439 439 HOH HOH . D 4 HOH A 123 440 440 HOH HOH . D 4 HOH A 124 441 441 HOH HOH . D 4 HOH A 125 442 442 HOH HOH . D 4 HOH A 126 443 443 HOH HOH . D 4 HOH A 127 444 444 HOH HOH . D 4 HOH A 128 445 445 HOH HOH . D 4 HOH A 129 446 446 HOH HOH . D 4 HOH A 130 447 447 HOH HOH . D 4 HOH A 131 448 448 HOH HOH . D 4 HOH A 132 449 449 HOH HOH . D 4 HOH A 133 450 450 HOH HOH . D 4 HOH A 134 451 451 HOH HOH . D 4 HOH A 135 452 452 HOH HOH . D 4 HOH A 136 453 453 HOH HOH . D 4 HOH A 137 454 454 HOH HOH . D 4 HOH A 138 455 455 HOH HOH . D 4 HOH A 139 456 456 HOH HOH . D 4 HOH A 140 457 457 HOH HOH . D 4 HOH A 141 458 458 HOH HOH . D 4 HOH A 142 459 459 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 23.47 28.258 72.282 1 6.28 ? PA NAP 316 A 1 HETATM 2 O O1A NAP . . . B 2 24.428 29.204 71.703 1 6.61 ? O1A NAP 316 A 1 HETATM 3 O O2A NAP . . . B 2 22.407 28.694 73.157 1 9.1 ? O2A NAP 316 A 1 HETATM 4 O O5B NAP . . . B 2 24.363 27.056 72.862 1 6.45 ? O5B NAP 316 A 1 HETATM 5 C C5B NAP . . . B 2 23.681 25.875 73.338 1 3.96 ? C5B NAP 316 A 1 HETATM 6 C C4B NAP . . . B 2 24.841 24.982 73.711 1 4.75 ? C4B NAP 316 A 1 HETATM 7 O O4B NAP . . . B 2 25.62 25.672 74.703 1 7.79 ? O4B NAP 316 A 1 HETATM 8 C C3B NAP . . . B 2 24.405 23.631 74.323 1 4.94 ? C3B NAP 316 A 1 HETATM 9 O O3B NAP . . . B 2 25.368 22.653 74.003 1 4.25 ? O3B NAP 316 A 1 HETATM 10 C C2B NAP . . . B 2 24.531 23.841 75.819 1 5.78 ? C2B NAP 316 A 1 HETATM 11 O O2B NAP . . . B 2 24.867 22.638 76.537 1 6.72 ? O2B NAP 316 A 1 HETATM 12 C C1B NAP . . . B 2 25.667 24.847 75.878 1 3.85 ? C1B NAP 316 A 1 HETATM 13 N N9A NAP . . . B 2 25.633 25.623 77.176 1 5.31 ? N9A NAP 316 A 1 HETATM 14 C C8A NAP . . . B 2 24.569 26.17 77.803 1 2 ? C8A NAP 316 A 1 HETATM 15 N N7A NAP . . . B 2 24.995 26.823 78.869 1 3.94 ? N7A NAP 316 A 1 HETATM 16 C C5A NAP . . . B 2 26.323 26.676 78.853 1 2 ? C5A NAP 316 A 1 HETATM 17 C C6A NAP . . . B 2 27.196 27.082 79.847 1 7.1 ? C6A NAP 316 A 1 HETATM 18 N N6A NAP . . . B 2 26.778 27.843 80.854 1 9.39 ? N6A NAP 316 A 1 HETATM 19 N N1A NAP . . . B 2 28.479 26.663 79.772 1 5.83 ? N1A NAP 316 A 1 HETATM 20 C C2A NAP . . . B 2 28.861 25.917 78.726 1 5.05 ? C2A NAP 316 A 1 HETATM 21 N N3A NAP . . . B 2 28.017 25.537 77.783 1 2 ? N3A NAP 316 A 1 HETATM 22 C C4A NAP . . . B 2 26.736 25.891 77.837 1 2 ? C4A NAP 316 A 1 HETATM 23 O O3 NAP . . . B 2 22.828 27.532 70.976 1 8.66 ? O3 NAP 316 A 1 HETATM 24 P PN NAP . . . B 2 21.469 27.423 70.149 1 5.41 ? PN NAP 316 A 1 HETATM 25 O O1N NAP . . . B 2 20.692 26.308 70.716 1 4.41 ? O1N NAP 316 A 1 HETATM 26 O O2N NAP . . . B 2 21.953 27.36 68.737 1 9.34 ? O2N NAP 316 A 1 HETATM 27 O O5D NAP . . . B 2 20.632 28.851 70.272 1 5.38 ? O5D NAP 316 A 1 HETATM 28 C C5D NAP . . . B 2 19.819 29.201 71.405 1 3.3 ? C5D NAP 316 A 1 HETATM 29 C C4D NAP . . . B 2 18.338 29.082 71.067 1 6.58 ? C4D NAP 316 A 1 HETATM 30 O O4D NAP . . . B 2 18.188 30.01 69.991 1 5.02 ? O4D NAP 316 A 1 HETATM 31 C C3D NAP . . . B 2 17.929 27.757 70.46 1 4.27 ? C3D NAP 316 A 1 HETATM 32 O O3D NAP . . . B 2 17.739 26.611 71.322 1 3.94 ? O3D NAP 316 A 1 HETATM 33 C C2D NAP . . . B 2 16.645 28.196 69.836 1 4.7 ? C2D NAP 316 A 1 HETATM 34 O O2D NAP . . . B 2 15.682 28.126 70.878 1 3.52 ? O2D NAP 316 A 1 HETATM 35 C C1D NAP . . . B 2 17.056 29.566 69.274 1 4.65 ? C1D NAP 316 A 1 HETATM 36 N N1N NAP . . . B 2 17.516 29.486 67.853 1 2.64 ? N1N NAP 316 A 1 HETATM 37 C C2N NAP . . . B 2 16.663 29.951 66.873 1 2.52 ? C2N NAP 316 A 1 HETATM 38 C C3N NAP . . . B 2 17.011 29.855 65.541 1 3.62 ? C3N NAP 316 A 1 HETATM 39 C C7N NAP . . . B 2 16.124 30.592 64.531 1 3.74 ? C7N NAP 316 A 1 HETATM 40 O O7N NAP . . . B 2 16.235 30.382 63.327 1 10.28 ? O7N NAP 316 A 1 HETATM 41 N N7N NAP . . . B 2 15.143 31.386 64.978 1 2.75 ? N7N NAP 316 A 1 HETATM 42 C C4N NAP . . . B 2 18.192 29.207 65.137 1 3.71 ? C4N NAP 316 A 1 HETATM 43 C C5N NAP . . . B 2 19.095 28.733 66.083 1 3.68 ? C5N NAP 316 A 1 HETATM 44 C C6N NAP . . . B 2 18.742 28.921 67.434 1 3.59 ? C6N NAP 316 A 1 HETATM 45 P P2B NAP . . . B 2 23.777 21.736 77.279 1 10.53 ? P2B NAP 316 A 1 HETATM 46 O O1X NAP . . . B 2 22.409 21.783 76.777 1 3.86 ? O1X NAP 316 A 1 HETATM 47 O O2X NAP . . . B 2 24.59 20.55 76.993 1 11.79 ? O2X NAP 316 A 1 HETATM 48 O O3X NAP . . . B 2 23.871 22.246 78.676 1 9.57 ? O3X NAP 316 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #