data_2ACW
#
_model_server_result.job_id            e2kkIAmMYMlLKhm_OZN-xw 
_model_server_result.datetime_utc      '2024-11-25 02:43:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2acw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    2ACW 
#
_exptl.entry_id    2ACW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              566.302 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.67 
_cell.angle_gamma         90 
_cell.entry_id            2ACW 
_cell.length_a            53.523 
_cell.length_b            90.662 
_cell.length_c            101.581 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ACW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H24 N2 O17 P2' 
_chem_comp.formula_weight    566.302 
_chem_comp.id                UPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-GLUCOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UPG sing 358 n n 
N1 C6 UPG sing 359 n n 
N1 C1C UPG sing 360 n n 
C2 N3 UPG sing 361 n n 
C2 O2 UPG doub 362 n n 
N3 C4 UPG sing 363 n n 
N3 HN3 UPG sing 364 n n 
C4 C5 UPG sing 365 n n 
C4 O4 UPG doub 366 n n 
C5 C6 UPG doub 367 n n 
C5 H5 UPG sing 368 n n 
C6 H6 UPG sing 369 n n 
C1C C2C UPG sing 370 n n 
C1C O4C UPG sing 371 n n 
C1C H1C UPG sing 372 n n 
C2C O2C UPG sing 373 n n 
C2C C3C UPG sing 374 n n 
C2C H2C UPG sing 375 n n 
O2C HO2C UPG sing 376 n n 
C3C C4C UPG sing 377 n n 
C3C O3C UPG sing 378 n n 
C3C H3C UPG sing 379 n n 
C4C O4C UPG sing 380 n n 
C4C C5C UPG sing 381 n n 
C4C H4C UPG sing 382 n n 
O3C HO3C UPG sing 383 n n 
C5C O5C UPG sing 384 n n 
C5C H5C1 UPG sing 385 n n 
C5C H5C2 UPG sing 386 n n 
O5C PA UPG sing 387 n n 
PA O1A UPG doub 388 n n 
PA O2A UPG sing 389 n n 
PA O3A UPG sing 390 n n 
O2A HOA2 UPG sing 391 n n 
O3A PB UPG sing 392 n n 
PB O1B UPG doub 393 n n 
PB O2B UPG sing 394 n n 
PB O3B UPG sing 395 n n 
O2B HOB2 UPG sing 396 n n 
O3B C1' UPG sing 397 n n 
C1' C2' UPG sing 398 n n 
C1' O5' UPG sing 399 n n 
C1' H1' UPG sing 400 n n 
C2' C3' UPG sing 401 n n 
C2' O2' UPG sing 402 n n 
C2' H2' UPG sing 403 n n 
C3' C4' UPG sing 404 n n 
C3' O3' UPG sing 405 n n 
C3' H3' UPG sing 406 n n 
C4' C5' UPG sing 407 n n 
C4' O4' UPG sing 408 n n 
C4' H4' UPG sing 409 n n 
C5' C6' UPG sing 410 n n 
C5' O5' UPG sing 411 n n 
C5' H5' UPG sing 412 n n 
C6' O6' UPG sing 413 n n 
C6' "H6'1" UPG sing 414 n n 
C6' "H6'2" UPG sing 415 n n 
O2' HO2' UPG sing 416 n n 
O3' HO3' UPG sing 417 n n 
O4' HO4' UPG sing 418 n n 
O6' HO6' UPG sing 419 n n 
#
_atom_sites.entry_id                     2ACW 
_atom_sites.fract_transf_matrix[1][1]    0.018684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01009 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UPG A 1 900 900 UPG UPG . 
D 2 UPG B 1 901 900 UPG UPG . 
E 3 HOH A 1 901 6 HOH WAT . 
E 3 HOH A 2 902 8 HOH WAT . 
E 3 HOH A 3 903 14 HOH WAT . 
E 3 HOH A 4 904 15 HOH WAT . 
E 3 HOH A 5 905 16 HOH WAT . 
F 3 HOH B 1 902 1 HOH WAT . 
F 3 HOH B 2 903 2 HOH WAT . 
F 3 HOH B 3 904 3 HOH WAT . 
F 3 HOH B 4 905 4 HOH WAT . 
F 3 HOH B 5 906 5 HOH WAT . 
F 3 HOH B 6 907 7 HOH WAT . 
F 3 HOH B 7 908 9 HOH WAT . 
F 3 HOH B 8 909 10 HOH WAT . 
F 3 HOH B 9 910 11 HOH WAT . 
F 3 HOH B 10 911 12 HOH WAT . 
F 3 HOH B 11 912 13 HOH WAT . 
F 3 HOH B 12 913 17 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UPG . . . C 2 33.639 29.547 35.043 1 43.48 ? N1 UPG 900 A 1 
HETATM 2 C C2 UPG . . . C 2 34.267 30.844 35.229 1 42.66 ? C2 UPG 900 A 1 
HETATM 3 N N3 UPG . . . C 2 34.323 31.605 34.071 1 45.75 ? N3 UPG 900 A 1 
HETATM 4 C C4 UPG . . . C 2 33.863 31.288 32.787 1 43.83 ? C4 UPG 900 A 1 
HETATM 5 C C5 UPG . . . C 2 33.237 29.948 32.67 1 44.72 ? C5 UPG 900 A 1 
HETATM 6 C C6 UPG . . . C 2 33.153 29.158 33.768 1 41.68 ? C6 UPG 900 A 1 
HETATM 7 O O2 UPG . . . C 2 34.705 31.23 36.323 1 43.68 ? O2 UPG 900 A 1 
HETATM 8 O O4 UPG . . . C 2 33.969 32.057 31.838 1 45.07 ? O4 UPG 900 A 1 
HETATM 9 C C1C UPG . . . C 2 33.499 28.622 36.216 1 41.84 ? C1C UPG 900 A 1 
HETATM 10 C C2C UPG . . . C 2 32.178 28.774 36.979 1 40.03 ? C2C UPG 900 A 1 
HETATM 11 O O2C UPG . . . C 2 32.149 29.795 37.958 1 42.46 ? O2C UPG 900 A 1 
HETATM 12 C C3C UPG . . . C 2 31.977 27.35 37.457 1 42.54 ? C3C UPG 900 A 1 
HETATM 13 C C4C UPG . . . C 2 32.633 26.433 36.452 1 42.58 ? C4C UPG 900 A 1 
HETATM 14 O O4C UPG . . . C 2 33.561 27.276 35.727 1 45.17 ? O4C UPG 900 A 1 
HETATM 15 O O3C UPG . . . C 2 32.586 27.201 38.753 1 43.07 ? O3C UPG 900 A 1 
HETATM 16 C C5C UPG . . . C 2 31.711 25.809 35.393 1 44.45 ? C5C UPG 900 A 1 
HETATM 17 O O5C UPG . . . C 2 31.227 24.589 35.96 1 43.94 ? O5C UPG 900 A 1 
HETATM 18 P PA UPG . . . C 2 29.916 23.949 35.424 1 43.27 ? PA UPG 900 A 1 
HETATM 19 O O1A UPG . . . C 2 29.691 22.748 36.185 1 43.38 ? O1A UPG 900 A 1 
HETATM 20 O O2A UPG . . . C 2 28.856 24.948 35.424 1 44.49 ? O2A UPG 900 A 1 
HETATM 21 O O3A UPG . . . C 2 30.2 23.618 33.89 1 45.55 ? O3A UPG 900 A 1 
HETATM 22 P PB UPG . . . C 2 31.193 22.656 33.074 1 50.27 ? PB UPG 900 A 1 
HETATM 23 O O1B UPG . . . C 2 32.374 22.265 33.809 1 44.97 ? O1B UPG 900 A 1 
HETATM 24 O O2B UPG . . . C 2 31.448 23.344 31.811 1 50.75 ? O2B UPG 900 A 1 
HETATM 25 O O3B UPG . . . C 2 30.3 21.334 32.86 1 54.74 ? O3B UPG 900 A 1 
HETATM 26 C C1' UPG . . . C 2 30.553 19.943 33.076 1 67.02 ? C1' UPG 900 A 1 
HETATM 27 C C2' UPG . . . C 2 29.26 19.226 32.625 1 69.75 ? C2' UPG 900 A 1 
HETATM 28 C C3' UPG . . . C 2 28.055 19.602 33.545 1 71.26 ? C3' UPG 900 A 1 
HETATM 29 C C4' UPG . . . C 2 28.437 19.114 34.95 1 73.1 ? C4' UPG 900 A 1 
HETATM 30 C C5' UPG . . . C 2 29.717 19.838 35.402 1 72.98 ? C5' UPG 900 A 1 
HETATM 31 C C6' UPG . . . C 2 30.192 19.394 36.801 1 75.67 ? C6' UPG 900 A 1 
HETATM 32 O O2' UPG . . . C 2 29 19.608 31.285 1 67.69 ? O2' UPG 900 A 1 
HETATM 33 O O3' UPG . . . C 2 26.864 18.939 33.111 1 74.21 ? O3' UPG 900 A 1 
HETATM 34 O O4' UPG . . . C 2 27.393 19.415 35.9 1 71.97 ? O4' UPG 900 A 1 
HETATM 35 O O5' UPG . . . C 2 30.845 19.59 34.478 1 71.32 ? O5' UPG 900 A 1 
HETATM 36 O O6' UPG . . . C 2 29.959 17.972 36.86 1 71.13 ? O6' UPG 900 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#