data_2ACW # _model_server_result.job_id a8O3TYznGNaZhoNQn1TlEg _model_server_result.datetime_utc '2024-11-08 12:01:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2acw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 2ACW # _exptl.entry_id 2ACW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.302 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-5'-DIPHOSPHATE-GLUCOSE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.67 _cell.angle_gamma 90 _cell.entry_id 2ACW _cell.length_a 53.523 _cell.length_b 90.662 _cell.length_c 101.581 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ACW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H24 N2 O17 P2' _chem_comp.formula_weight 566.302 _chem_comp.id UPG _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-5'-DIPHOSPHATE-GLUCOSE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UPG sing 358 n n N1 C6 UPG sing 359 n n N1 C1C UPG sing 360 n n C2 N3 UPG sing 361 n n C2 O2 UPG doub 362 n n N3 C4 UPG sing 363 n n N3 HN3 UPG sing 364 n n C4 C5 UPG sing 365 n n C4 O4 UPG doub 366 n n C5 C6 UPG doub 367 n n C5 H5 UPG sing 368 n n C6 H6 UPG sing 369 n n C1C C2C UPG sing 370 n n C1C O4C UPG sing 371 n n C1C H1C UPG sing 372 n n C2C O2C UPG sing 373 n n C2C C3C UPG sing 374 n n C2C H2C UPG sing 375 n n O2C HO2C UPG sing 376 n n C3C C4C UPG sing 377 n n C3C O3C UPG sing 378 n n C3C H3C UPG sing 379 n n C4C O4C UPG sing 380 n n C4C C5C UPG sing 381 n n C4C H4C UPG sing 382 n n O3C HO3C UPG sing 383 n n C5C O5C UPG sing 384 n n C5C H5C1 UPG sing 385 n n C5C H5C2 UPG sing 386 n n O5C PA UPG sing 387 n n PA O1A UPG doub 388 n n PA O2A UPG sing 389 n n PA O3A UPG sing 390 n n O2A HOA2 UPG sing 391 n n O3A PB UPG sing 392 n n PB O1B UPG doub 393 n n PB O2B UPG sing 394 n n PB O3B UPG sing 395 n n O2B HOB2 UPG sing 396 n n O3B C1' UPG sing 397 n n C1' C2' UPG sing 398 n n C1' O5' UPG sing 399 n n C1' H1' UPG sing 400 n n C2' C3' UPG sing 401 n n C2' O2' UPG sing 402 n n C2' H2' UPG sing 403 n n C3' C4' UPG sing 404 n n C3' O3' UPG sing 405 n n C3' H3' UPG sing 406 n n C4' C5' UPG sing 407 n n C4' O4' UPG sing 408 n n C4' H4' UPG sing 409 n n C5' C6' UPG sing 410 n n C5' O5' UPG sing 411 n n C5' H5' UPG sing 412 n n C6' O6' UPG sing 413 n n C6' "H6'1" UPG sing 414 n n C6' "H6'2" UPG sing 415 n n O2' HO2' UPG sing 416 n n O3' HO3' UPG sing 417 n n O4' HO4' UPG sing 418 n n O6' HO6' UPG sing 419 n n # _atom_sites.entry_id 2ACW _atom_sites.fract_transf_matrix[1][1] 0.018684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UPG A 1 900 900 UPG UPG . D 2 UPG B 1 901 900 UPG UPG . E 3 HOH A 1 901 6 HOH WAT . E 3 HOH A 2 902 8 HOH WAT . E 3 HOH A 3 903 14 HOH WAT . E 3 HOH A 4 904 15 HOH WAT . E 3 HOH A 5 905 16 HOH WAT . F 3 HOH B 1 902 1 HOH WAT . F 3 HOH B 2 903 2 HOH WAT . F 3 HOH B 3 904 3 HOH WAT . F 3 HOH B 4 905 4 HOH WAT . F 3 HOH B 5 906 5 HOH WAT . F 3 HOH B 6 907 7 HOH WAT . F 3 HOH B 7 908 9 HOH WAT . F 3 HOH B 8 909 10 HOH WAT . F 3 HOH B 9 910 11 HOH WAT . F 3 HOH B 10 911 12 HOH WAT . F 3 HOH B 11 912 13 HOH WAT . F 3 HOH B 12 913 17 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UPG . . . C 2 33.639 29.547 35.043 1 43.48 ? N1 UPG 900 A 1 HETATM 2 C C2 UPG . . . C 2 34.267 30.844 35.229 1 42.66 ? C2 UPG 900 A 1 HETATM 3 N N3 UPG . . . C 2 34.323 31.605 34.071 1 45.75 ? N3 UPG 900 A 1 HETATM 4 C C4 UPG . . . C 2 33.863 31.288 32.787 1 43.83 ? C4 UPG 900 A 1 HETATM 5 C C5 UPG . . . C 2 33.237 29.948 32.67 1 44.72 ? C5 UPG 900 A 1 HETATM 6 C C6 UPG . . . C 2 33.153 29.158 33.768 1 41.68 ? C6 UPG 900 A 1 HETATM 7 O O2 UPG . . . C 2 34.705 31.23 36.323 1 43.68 ? O2 UPG 900 A 1 HETATM 8 O O4 UPG . . . C 2 33.969 32.057 31.838 1 45.07 ? O4 UPG 900 A 1 HETATM 9 C C1C UPG . . . C 2 33.499 28.622 36.216 1 41.84 ? C1C UPG 900 A 1 HETATM 10 C C2C UPG . . . C 2 32.178 28.774 36.979 1 40.03 ? C2C UPG 900 A 1 HETATM 11 O O2C UPG . . . C 2 32.149 29.795 37.958 1 42.46 ? O2C UPG 900 A 1 HETATM 12 C C3C UPG . . . C 2 31.977 27.35 37.457 1 42.54 ? C3C UPG 900 A 1 HETATM 13 C C4C UPG . . . C 2 32.633 26.433 36.452 1 42.58 ? C4C UPG 900 A 1 HETATM 14 O O4C UPG . . . C 2 33.561 27.276 35.727 1 45.17 ? O4C UPG 900 A 1 HETATM 15 O O3C UPG . . . C 2 32.586 27.201 38.753 1 43.07 ? O3C UPG 900 A 1 HETATM 16 C C5C UPG . . . C 2 31.711 25.809 35.393 1 44.45 ? C5C UPG 900 A 1 HETATM 17 O O5C UPG . . . C 2 31.227 24.589 35.96 1 43.94 ? O5C UPG 900 A 1 HETATM 18 P PA UPG . . . C 2 29.916 23.949 35.424 1 43.27 ? PA UPG 900 A 1 HETATM 19 O O1A UPG . . . C 2 29.691 22.748 36.185 1 43.38 ? O1A UPG 900 A 1 HETATM 20 O O2A UPG . . . C 2 28.856 24.948 35.424 1 44.49 ? O2A UPG 900 A 1 HETATM 21 O O3A UPG . . . C 2 30.2 23.618 33.89 1 45.55 ? O3A UPG 900 A 1 HETATM 22 P PB UPG . . . C 2 31.193 22.656 33.074 1 50.27 ? PB UPG 900 A 1 HETATM 23 O O1B UPG . . . C 2 32.374 22.265 33.809 1 44.97 ? O1B UPG 900 A 1 HETATM 24 O O2B UPG . . . C 2 31.448 23.344 31.811 1 50.75 ? O2B UPG 900 A 1 HETATM 25 O O3B UPG . . . C 2 30.3 21.334 32.86 1 54.74 ? O3B UPG 900 A 1 HETATM 26 C C1' UPG . . . C 2 30.553 19.943 33.076 1 67.02 ? C1' UPG 900 A 1 HETATM 27 C C2' UPG . . . C 2 29.26 19.226 32.625 1 69.75 ? C2' UPG 900 A 1 HETATM 28 C C3' UPG . . . C 2 28.055 19.602 33.545 1 71.26 ? C3' UPG 900 A 1 HETATM 29 C C4' UPG . . . C 2 28.437 19.114 34.95 1 73.1 ? C4' UPG 900 A 1 HETATM 30 C C5' UPG . . . C 2 29.717 19.838 35.402 1 72.98 ? C5' UPG 900 A 1 HETATM 31 C C6' UPG . . . C 2 30.192 19.394 36.801 1 75.67 ? C6' UPG 900 A 1 HETATM 32 O O2' UPG . . . C 2 29 19.608 31.285 1 67.69 ? O2' UPG 900 A 1 HETATM 33 O O3' UPG . . . C 2 26.864 18.939 33.111 1 74.21 ? O3' UPG 900 A 1 HETATM 34 O O4' UPG . . . C 2 27.393 19.415 35.9 1 71.97 ? O4' UPG 900 A 1 HETATM 35 O O5' UPG . . . C 2 30.845 19.59 34.478 1 71.32 ? O5' UPG 900 A 1 HETATM 36 O O6' UPG . . . C 2 29.959 17.972 36.86 1 71.13 ? O6' UPG 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #