data_2ACX # _model_server_result.job_id b9mj_UxrEnic103QzxTKJA _model_server_result.datetime_utc '2024-11-28 07:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2acx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":577}' # _entry.id 2ACX # _exptl.entry_id 2ACX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.58 _cell.angle_gamma 90 _cell.entry_id 2ACX _cell.length_a 120.164 _cell.length_b 59.27 _cell.length_c 221.095 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ACX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2A ANP . A ANP 577 1_555 C MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 E O2G ANP . A ANP 577 1_555 C MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 E O3G ANP . A ANP 577 1_555 C MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc4 E O3A ANP . A ANP 577 1_555 C MG MG . A MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc5 H O2A ANP . B ANP 577 1_555 F MG MG . B MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 H O2G ANP . B ANP 577 1_555 F MG MG . B MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 H O3A ANP . B ANP 577 1_555 F MG MG . B MG 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2ACX _atom_sites.fract_transf_matrix[1][1] 0.008322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001857 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 578 578 MG MG . D 3 PO4 A 1 579 579 PO4 PO4 . E 4 ANP A 1 577 577 ANP ANP . F 2 MG B 1 578 578 MG MG . G 3 PO4 B 1 579 579 PO4 PO4 . H 4 ANP B 1 577 577 ANP ANP . I 5 HOH A 1 580 1 HOH HOH . I 5 HOH A 2 581 2 HOH HOH . I 5 HOH A 3 582 3 HOH HOH . I 5 HOH A 4 583 4 HOH HOH . I 5 HOH A 5 584 5 HOH HOH . I 5 HOH A 6 585 6 HOH HOH . I 5 HOH A 7 586 7 HOH HOH . I 5 HOH A 8 587 8 HOH HOH . I 5 HOH A 9 588 9 HOH HOH . I 5 HOH A 10 589 10 HOH HOH . I 5 HOH A 11 590 11 HOH HOH . I 5 HOH A 12 591 12 HOH HOH . I 5 HOH A 13 592 13 HOH HOH . I 5 HOH A 14 593 14 HOH HOH . I 5 HOH A 15 594 15 HOH HOH . I 5 HOH A 16 595 16 HOH HOH . I 5 HOH A 17 596 17 HOH HOH . I 5 HOH A 18 597 18 HOH HOH . I 5 HOH A 19 598 19 HOH HOH . I 5 HOH A 20 599 20 HOH HOH . I 5 HOH A 21 600 21 HOH HOH . I 5 HOH A 22 601 22 HOH HOH . I 5 HOH A 23 602 23 HOH HOH . I 5 HOH A 24 603 24 HOH HOH . I 5 HOH A 25 604 25 HOH HOH . I 5 HOH A 26 605 26 HOH HOH . I 5 HOH A 27 606 27 HOH HOH . I 5 HOH A 28 607 28 HOH HOH . I 5 HOH A 29 608 29 HOH HOH . I 5 HOH A 30 609 30 HOH HOH . J 5 HOH B 1 580 1 HOH HOH . J 5 HOH B 2 581 2 HOH HOH . J 5 HOH B 3 582 3 HOH HOH . J 5 HOH B 4 583 4 HOH HOH . J 5 HOH B 5 584 5 HOH HOH . J 5 HOH B 6 585 6 HOH HOH . J 5 HOH B 7 586 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 4 -34.144 26.309 21.143 1 104.65 ? PG ANP 577 A 1 HETATM 2 O O1G ANP . . . E 4 -33.872 25.092 20.262 1 105.68 ? O1G ANP 577 A 1 HETATM 3 O O2G ANP . . . E 4 -32.87 26.869 21.775 1 102.15 ? O2G ANP 577 A 1 HETATM 4 O O3G ANP . . . E 4 -35.107 27.291 20.469 1 103.58 ? O3G ANP 577 A 1 HETATM 5 P PB ANP . . . E 4 -34.053 25.711 24.089 1 98.23 ? PB ANP 577 A 1 HETATM 6 O O1B ANP . . . E 4 -35.067 25.27 25.133 1 99.74 ? O1B ANP 577 A 1 HETATM 7 O O2B ANP . . . E 4 -32.898 24.747 23.923 1 101.31 ? O2B ANP 577 A 1 HETATM 8 N N3B ANP . . . E 4 -34.952 25.788 22.604 1 100.48 ? N3B ANP 577 A 1 HETATM 9 P PA ANP . . . E 4 -31.924 27.738 24.728 1 76.44 ? PA ANP 577 A 1 HETATM 10 O O1A ANP . . . E 4 -30.909 26.604 24.896 1 78.3 ? O1A ANP 577 A 1 HETATM 11 O O2A ANP . . . E 4 -31.626 28.897 23.857 1 81.3 ? O2A ANP 577 A 1 HETATM 12 O O3A ANP . . . E 4 -33.439 27.221 24.399 1 89.85 ? O3A ANP 577 A 1 HETATM 13 O O5' ANP . . . E 4 -32.05 28.512 26.086 1 73.65 ? O5' ANP 577 A 1 HETATM 14 C C5' ANP . . . E 4 -32.791 29.72 26.242 1 69.78 ? C5' ANP 577 A 1 HETATM 15 C C4' ANP . . . E 4 -31.925 30.813 26.847 1 66.48 ? C4' ANP 577 A 1 HETATM 16 O O4' ANP . . . E 4 -31.389 30.434 28.132 1 64.23 ? O4' ANP 577 A 1 HETATM 17 C C3' ANP . . . E 4 -30.695 31.153 26.025 1 65.13 ? C3' ANP 577 A 1 HETATM 18 O O3' ANP . . . E 4 -30.88 32.108 25.016 1 65.88 ? O3' ANP 577 A 1 HETATM 19 C C2' ANP . . . E 4 -29.88 31.857 27.047 1 64.89 ? C2' ANP 577 A 1 HETATM 20 O O2' ANP . . . E 4 -30.53 33.084 27.243 1 65.57 ? O2' ANP 577 A 1 HETATM 21 C C1' ANP . . . E 4 -30.092 31.036 28.281 1 62.85 ? C1' ANP 577 A 1 HETATM 22 N N9 ANP . . . E 4 -29.06 29.985 28.366 1 63.1 ? N9 ANP 577 A 1 HETATM 23 C C8 ANP . . . E 4 -29.124 28.744 27.832 1 61.23 ? C8 ANP 577 A 1 HETATM 24 N N7 ANP . . . E 4 -28.026 28.072 28.159 1 61.04 ? N7 ANP 577 A 1 HETATM 25 C C5 ANP . . . E 4 -27.258 28.867 28.93 1 61.01 ? C5 ANP 577 A 1 HETATM 26 C C6 ANP . . . E 4 -25.999 28.766 29.637 1 60.08 ? C6 ANP 577 A 1 HETATM 27 N N6 ANP . . . E 4 -25.261 27.663 29.544 1 61.85 ? N6 ANP 577 A 1 HETATM 28 N N1 ANP . . . E 4 -25.532 29.833 30.285 1 62.39 ? N1 ANP 577 A 1 HETATM 29 C C2 ANP . . . E 4 -26.201 30.982 30.38 1 60.89 ? C2 ANP 577 A 1 HETATM 30 N N3 ANP . . . E 4 -27.384 31.118 29.787 1 61.72 ? N3 ANP 577 A 1 HETATM 31 C C4 ANP . . . E 4 -27.93 30.133 29.044 1 62.51 ? C4 ANP 577 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #