data_2ACZ # _model_server_result.job_id -byZU7Wv0GbR3lBYHA0xfQ _model_server_result.datetime_utc '2024-11-24 15:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2acz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":131}' # _entry.id 2ACZ # _exptl.entry_id 2ACZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.237 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ACZ _cell.length_a 138.759 _cell.length_b 138.759 _cell.length_c 521.873 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ACZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 208.1385 120.168819 0 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 240.337638 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 45 A HIS 45 1_555 F C8M FAD . A FAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 B SG CYS 55 B CYS 55 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 B SG CYS 60 B CYS 60 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc3 B OD2 ASP 63 B ASP 63 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 B OD1 ASP 63 B ASP 63 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 B SG CYS 75 B CYS 75 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc6 B SG CYS 149 B CYS 149 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.883 ? metalc ? metalc7 B SG CYS 152 B CYS 152 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc8 B SG CYS 155 B CYS 155 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc9 B SG CYS 159 B CYS 159 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc10 B SG CYS 206 B CYS 206 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc11 B SG CYS 212 B CYS 212 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc12 B SG CYS 216 B CYS 216 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.968 ? metalc ? metalc13 C NE2 HIS 84 C HIS 84 1_555 J FE HEB . C HEB 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc14 J FE HEB . C HEB 130 1_555 D NE2 HIS 71 D HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C15 H21 Cl2 N O5' _chem_comp.formula_weight 366.237 _chem_comp.id AT5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ATPENIN A5;AA5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C7 AT5 doub 70 n n C7 C8 AT5 sing 71 n n C7 C6 AT5 sing 72 n n C8 C11 AT5 sing 73 n n C8 C10 AT5 sing 74 n n C8 H8 AT5 sing 75 n n C11 C12 AT5 sing 76 n n C11 H111 AT5 sing 77 n n C11 H112 AT5 sing 78 n n C12 C17 AT5 sing 79 n n C12 C13 AT5 sing 80 n n C12 H12 AT5 sing 81 n n C17 H171 AT5 sing 82 n n C17 H172 AT5 sing 83 n n C17 H173 AT5 sing 84 n n C13 CL12 AT5 sing 85 n n C13 C14 AT5 sing 86 n n C13 H13 AT5 sing 87 n n C14 CL16 AT5 sing 88 n n C14 H141 AT5 sing 89 n n C14 H142 AT5 sing 90 n n C10 H101 AT5 sing 91 n n C10 H102 AT5 sing 92 n n C10 H103 AT5 sing 93 n n C6 C5 AT5 sing 94 n y C6 C1 AT5 doub 95 n y C5 N4 AT5 sing 96 n y C5 O4 AT5 doub 97 n n N4 C3 AT5 sing 98 n y N4 HN4 AT5 sing 99 n n C3 C2 AT5 doub 100 n y C3 O3 AT5 sing 101 n n C2 C1 AT5 sing 102 n y C2 O2 AT5 sing 103 n n C1 O1 AT5 sing 104 n n O1 HO1 AT5 sing 105 n n O2 CM2 AT5 sing 106 n n CM2 HM21 AT5 sing 107 n n CM2 HM22 AT5 sing 108 n n CM2 HM23 AT5 sing 109 n n O3 CM3 AT5 sing 110 n n CM3 HM31 AT5 sing 111 n n CM3 HM32 AT5 sing 112 n n CM3 HM33 AT5 sing 113 n n # _atom_sites.entry_id 2ACZ _atom_sites.fract_transf_matrix[1][1] 0.007207 _atom_sites.fract_transf_matrix[1][2] 0.004161 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 OAA A 1 589 7 OAA OAA . F 6 FAD A 1 601 601 FAD FAD . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEB C 1 130 5 HEB HEB . K 11 AT5 C 1 131 1 AT5 AT5 . L 12 CDN C 1 132 8 CDN CDN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 AT5 . . . K 11 86.07 93.294 107.849 1 77.06 ? O5 AT5 131 C 1 HETATM 2 C C7 AT5 . . . K 11 86.255 94.402 107.304 1 79.1 ? C7 AT5 131 C 1 HETATM 3 C C8 AT5 . . . K 11 87.749 94.843 107.045 1 80.56 ? C8 AT5 131 C 1 HETATM 4 C C11 AT5 . . . K 11 88.02 95.063 105.602 1 82.41 ? C11 AT5 131 C 1 HETATM 5 C C12 AT5 . . . K 11 88.647 96.357 105.207 1 83.73 ? C12 AT5 131 C 1 HETATM 6 C C17 AT5 . . . K 11 88.342 96.964 103.782 1 82.9 ? C17 AT5 131 C 1 HETATM 7 C C13 AT5 . . . K 11 90.222 96.283 105.435 1 84.83 ? C13 AT5 131 C 1 HETATM 8 CL CL12 AT5 . . . K 11 91.036 95.212 104.219 1 85.07 ? CL12 AT5 131 C 1 HETATM 9 C C14 AT5 . . . K 11 90.891 97.724 105.347 1 85.41 ? C14 AT5 131 C 1 HETATM 10 CL CL16 AT5 . . . K 11 92.204 97.95 106.529 1 84.63 ? CL16 AT5 131 C 1 HETATM 11 C C10 AT5 . . . K 11 88.7 93.737 107.572 1 82.17 ? C10 AT5 131 C 1 HETATM 12 C C6 AT5 . . . K 11 84.959 95.216 106.989 1 77.29 ? C6 AT5 131 C 1 HETATM 13 C C5 AT5 . . . K 11 83.757 94.534 106.683 1 76.95 ? C5 AT5 131 C 1 HETATM 14 N N4 AT5 . . . K 11 82.543 95.201 106.406 1 78.02 ? N4 AT5 131 C 1 HETATM 15 C C3 AT5 . . . K 11 82.414 96.576 106.406 1 77.38 ? C3 AT5 131 C 1 HETATM 16 C C2 AT5 . . . K 11 83.654 97.337 106.718 1 77.32 ? C2 AT5 131 C 1 HETATM 17 C C1 AT5 . . . K 11 84.91 96.75 107.008 1 76.53 ? C1 AT5 131 C 1 HETATM 18 O O1 AT5 . . . K 11 85.984 97.509 107.286 1 74.75 ? O1 AT5 131 C 1 HETATM 19 O O2 AT5 . . . K 11 83.554 98.71 106.721 1 78.19 ? O2 AT5 131 C 1 HETATM 20 C CM2 AT5 . . . K 11 82.918 99.258 107.929 1 78.44 ? CM2 AT5 131 C 1 HETATM 21 O O3 AT5 . . . K 11 81.204 97.204 106.138 1 75.42 ? O3 AT5 131 C 1 HETATM 22 C CM3 AT5 . . . K 11 80.582 97.066 104.837 1 74.8 ? CM3 AT5 131 C 1 HETATM 23 O O4 AT5 . . . K 11 83.743 93.189 106.657 1 77.33 ? O4 AT5 131 C 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #