data_2ADA
#
_model_server_result.job_id            Rx2Lf-99EYSRppeQ6zvpgg 
_model_server_result.datetime_utc      '2024-11-06 12:29:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ada 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":353}' 
#
_entry.id    2ADA 
#
_exptl.entry_id    2ADA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              270.242 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '6-HYDROXY-7,8-DIHYDRO PURINE NUCLEOSIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.19 
_cell.angle_gamma         90 
_cell.entry_id            2ADA 
_cell.length_a            102.36 
_cell.length_b            94.11 
_cell.length_c            72.93 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ADA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc2 A NE2 HIS 17 A HIS 17 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc3 A NE2 HIS 214 A HIS 214 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc4 A OD2 ASP 295 A ASP 295 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc5 C O6 HPR . A HPR 353 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
#
_chem_comp.formula           'C10 H14 N4 O5' 
_chem_comp.formula_weight    270.242 
_chem_comp.id                HPR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '6-HYDROXY-7,8-DIHYDRO PURINE NUCLEOSIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 HPR doub 152 n y 
N1 C6 HPR sing 153 n y 
C2 N3 HPR sing 154 n y 
C2 H2 HPR sing 155 n n 
N3 C4 HPR doub 156 n y 
C4 C5 HPR sing 157 n y 
C4 N9 HPR sing 158 n n 
C5 C6 HPR doub 159 n y 
C5 N7 HPR sing 160 n n 
C6 O6 HPR sing 161 n n 
O6 HO6 HPR sing 162 n n 
N7 C8 HPR sing 163 n n 
N7 HN7 HPR sing 164 n n 
C8 N9 HPR sing 165 n n 
C8 H81 HPR sing 166 n n 
C8 H82 HPR sing 167 n n 
N9 C1' HPR sing 168 n n 
C1' C2' HPR sing 169 n n 
C1' O4' HPR sing 170 n n 
C1' H1' HPR sing 171 n n 
C2' O2' HPR sing 172 n n 
C2' C3' HPR sing 173 n n 
C2' H2' HPR sing 174 n n 
O2' HO2' HPR sing 175 n n 
C3' O3' HPR sing 176 n n 
C3' C4' HPR sing 177 n n 
C3' H3' HPR sing 178 n n 
O3' HO3' HPR sing 179 n n 
C4' O4' HPR sing 180 n n 
C4' C5' HPR sing 181 n n 
C4' H4' HPR sing 182 n n 
C5' O5' HPR sing 183 n n 
C5' "H5'1" HPR sing 184 n n 
C5' "H5'2" HPR sing 185 n n 
O5' HO5' HPR sing 186 n n 
#
_atom_sites.entry_id                     2ADA 
_atom_sites.fract_transf_matrix[1][1]    0.009769 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007413 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 400 400 ZN ZN . 
C 3 HPR A 1 353 353 HPR HPR . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 427 HOH HOH . 
D 4 HOH A 28 428 428 HOH HOH . 
D 4 HOH A 29 429 429 HOH HOH . 
D 4 HOH A 30 431 431 HOH HOH . 
D 4 HOH A 31 432 432 HOH HOH . 
D 4 HOH A 32 434 434 HOH HOH . 
D 4 HOH A 33 435 435 HOH HOH . 
D 4 HOH A 34 436 436 HOH HOH . 
D 4 HOH A 35 437 437 HOH HOH . 
D 4 HOH A 36 438 438 HOH HOH . 
D 4 HOH A 37 439 439 HOH HOH . 
D 4 HOH A 38 440 440 HOH HOH . 
D 4 HOH A 39 441 441 HOH HOH . 
D 4 HOH A 40 442 442 HOH HOH . 
D 4 HOH A 41 443 443 HOH HOH . 
D 4 HOH A 42 444 444 HOH HOH . 
D 4 HOH A 43 445 445 HOH HOH . 
D 4 HOH A 44 446 446 HOH HOH . 
D 4 HOH A 45 447 447 HOH HOH . 
D 4 HOH A 46 448 448 HOH HOH . 
D 4 HOH A 47 449 449 HOH HOH . 
D 4 HOH A 48 450 450 HOH HOH . 
D 4 HOH A 49 451 451 HOH HOH . 
D 4 HOH A 50 452 452 HOH HOH . 
D 4 HOH A 51 453 453 HOH HOH . 
D 4 HOH A 52 454 454 HOH HOH . 
D 4 HOH A 53 455 455 HOH HOH . 
D 4 HOH A 54 456 456 HOH HOH . 
D 4 HOH A 55 457 457 HOH HOH . 
D 4 HOH A 56 458 458 HOH HOH . 
D 4 HOH A 57 459 459 HOH HOH . 
D 4 HOH A 58 460 460 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HPR . . . C 3 1.374 21.025 39.015 1 8.54 ? N1 HPR 353 A 1 
HETATM 2 C C2 HPR . . . C 3 2.38 20.662 39.812 1 5.76 ? C2 HPR 353 A 1 
HETATM 3 N N3 HPR . . . C 3 3.544 20.191 39.381 1 6.3 ? N3 HPR 353 A 1 
HETATM 4 C C4 HPR . . . C 3 3.714 20.071 38.051 1 2.65 ? C4 HPR 353 A 1 
HETATM 5 C C5 HPR . . . C 3 2.758 20.416 37.167 1 3.35 ? C5 HPR 353 A 1 
HETATM 6 C C6 HPR . . . C 3 1.495 20.962 37.615 1 7.21 ? C6 HPR 353 A 1 
HETATM 7 O O6 HPR . . . C 3 1.259 22.241 37.034 1 10.43 ? O6 HPR 353 A 1 
HETATM 8 N N7 HPR . . . C 3 3.209 20.179 35.916 1 3.7 ? N7 HPR 353 A 1 
HETATM 9 C C8 HPR . . . C 3 4.445 19.698 36.073 1 4.58 ? C8 HPR 353 A 1 
HETATM 10 N N9 HPR . . . C 3 4.784 19.628 37.362 1 3.23 ? N9 HPR 353 A 1 
HETATM 11 C C1' HPR . . . C 3 5.905 18.979 37.901 1 5.65 ? C1' HPR 353 A 1 
HETATM 12 C C2' HPR . . . C 3 6.29 17.745 37.085 1 8.72 ? C2' HPR 353 A 1 
HETATM 13 O O2' HPR . . . C 3 6.518 16.749 38.075 1 6.87 ? O2' HPR 353 A 1 
HETATM 14 C C3' HPR . . . C 3 7.679 18.048 36.542 1 7.77 ? C3' HPR 353 A 1 
HETATM 15 O O3' HPR . . . C 3 8.521 16.894 36.583 1 12.13 ? O3' HPR 353 A 1 
HETATM 16 C C4' HPR . . . C 3 8.199 19.168 37.44 1 6.03 ? C4' HPR 353 A 1 
HETATM 17 O O4' HPR . . . C 3 7.047 19.85 37.956 1 6.13 ? O4' HPR 353 A 1 
HETATM 18 C C5' HPR . . . C 3 9.111 20.136 36.698 1 4.29 ? C5' HPR 353 A 1 
HETATM 19 O O5' HPR . . . C 3 8.65 20.42 35.374 1 8.94 ? O5' HPR 353 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#