data_2ADI # _model_server_result.job_id eWJZoe6PxU2wD7_nYJC1mg _model_server_result.datetime_utc '2024-10-12 12:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2adi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 2ADI # _exptl.entry_id 2ADI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ADI _cell.length_a 97.2 _cell.length_b 97.2 _cell.length_c 110.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ADI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 147 B CYS 140 1_555 B SG CYS 202 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 32 A ASP 32 1_555 C BA BA . A BA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.377 ? metalc ? metalc2 A OE1 GLU 50 A GLU 50 1_555 C BA BA . A BA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc3 A OE2 GLU 50 A GLU 50 1_555 C BA BA . A BA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.678 ? metalc ? metalc4 A O SER 91 A SER 91 1_555 C BA BA . A BA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc5 C BA BA . A BA 2000 1_555 E O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc6 C BA BA . A BA 2000 1_555 E O HOH . A HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc7 C BA BA . A BA 2000 1_555 E O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.229 ? metalc ? metalc8 C BA BA . A BA 2000 1_555 B OD1 ASN 105 B ASN 100 1_555 ? ? ? A ? ? ? ? ? ? ? ? 3.4 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 2ADI _atom_sites.fract_transf_matrix[1][1] 0.010288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BA A 1 2000 2000 BA BA . D 4 TRS A 1 700 700 TRS TRS . E 5 HOH A 1 2001 1 HOH HOH . E 5 HOH A 2 2002 3 HOH HOH . E 5 HOH A 3 2003 8 HOH HOH . E 5 HOH A 4 2004 10 HOH HOH . E 5 HOH A 5 2005 13 HOH HOH . E 5 HOH A 6 2006 16 HOH HOH . E 5 HOH A 7 2007 23 HOH HOH . E 5 HOH A 8 2008 24 HOH HOH . E 5 HOH A 9 2009 25 HOH HOH . E 5 HOH A 10 2010 26 HOH HOH . E 5 HOH A 11 2011 28 HOH HOH . E 5 HOH A 12 2012 29 HOH HOH . E 5 HOH A 13 2013 32 HOH HOH . E 5 HOH A 14 2014 40 HOH HOH . E 5 HOH A 15 2015 41 HOH HOH . F 5 HOH B 1 216 5 HOH HOH . F 5 HOH B 2 217 6 HOH HOH . F 5 HOH B 3 218 9 HOH HOH . F 5 HOH B 4 219 11 HOH HOH . F 5 HOH B 5 220 12 HOH HOH . F 5 HOH B 6 221 14 HOH HOH . F 5 HOH B 7 222 15 HOH HOH . F 5 HOH B 8 223 17 HOH HOH . F 5 HOH B 9 224 18 HOH HOH . F 5 HOH B 10 225 19 HOH HOH . F 5 HOH B 11 226 20 HOH HOH . F 5 HOH B 12 227 21 HOH HOH . F 5 HOH B 13 228 22 HOH HOH . F 5 HOH B 14 229 30 HOH HOH . F 5 HOH B 15 230 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 29.549 66.615 41.874 1 85.82 ? C TRS 700 A 1 HETATM 2 C C1 TRS . . . D 4 31.044 66.916 41.638 1 86.4 ? C1 TRS 700 A 1 HETATM 3 C C2 TRS . . . D 4 29.079 67.435 43.064 1 85.76 ? C2 TRS 700 A 1 HETATM 4 C C3 TRS . . . D 4 28.884 66.95 40.525 1 85.56 ? C3 TRS 700 A 1 HETATM 5 N N TRS . . . D 4 29.21 65.241 42.261 1 86.1 ? N TRS 700 A 1 HETATM 6 O O1 TRS . . . D 4 31.713 65.969 40.706 1 84.46 ? O1 TRS 700 A 1 HETATM 7 O O2 TRS . . . D 4 29.771 67.023 44.316 1 83.48 ? O2 TRS 700 A 1 HETATM 8 O O3 TRS . . . D 4 29.143 68.275 40.037 1 83.21 ? O3 TRS 700 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #