data_2AE2 # _model_server_result.job_id RjbDN7ZspwJZp305Xow5Cw _model_server_result.datetime_utc '2024-11-07 12:54:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ae2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":262}' # _entry.id 2AE2 # _exptl.entry_id 2AE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 141.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PSEUDOTROPINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AE2 _cell.length_a 88.6 _cell.length_b 88.6 _cell.length_c 338.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 A,C,D,G 3 1 B,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.3 76.729851 281.916667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C8 H15 N O' _chem_comp.formula_weight 141.211 _chem_comp.id PTO _chem_comp.mon_nstd_flag . _chem_comp.name PSEUDOTROPINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PTO sing 357 n n C1 C7 PTO sing 358 n n C1 N8 PTO sing 359 n n C1 H1 PTO sing 360 n n C2 C3 PTO sing 361 n n C2 H21 PTO sing 362 n n C2 H22 PTO sing 363 n n C3 C4 PTO sing 364 n n C3 O3 PTO sing 365 n n C3 H3 PTO sing 366 n n C4 C5 PTO sing 367 n n C4 H41 PTO sing 368 n n C4 H42 PTO sing 369 n n C5 C6 PTO sing 370 n n C5 N8 PTO sing 371 n n C5 H5 PTO sing 372 n n C6 C7 PTO sing 373 n n C6 H61 PTO sing 374 n n C6 H62 PTO sing 375 n n C7 H71 PTO sing 376 n n C7 H72 PTO sing 377 n n N8 C9 PTO sing 378 n n C9 H91 PTO sing 379 n n C9 H92 PTO sing 380 n n C9 H93 PTO sing 381 n n O3 HO3 PTO sing 382 n n # _atom_sites.entry_id 2AE2 _atom_sites.fract_transf_matrix[1][1] 0.011287 _atom_sites.fract_transf_matrix[1][2] 0.006516 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 261 261 NAP NAP . D 3 PTO A 1 262 262 PTO PTO . E 2 NAP B 1 261 261 NAP NAP . F 3 PTO B 1 262 262 PTO PTO . G 4 HOH A 1 263 6 HOH HOH . G 4 HOH A 2 264 9 HOH HOH . G 4 HOH A 3 265 11 HOH HOH . G 4 HOH A 4 266 13 HOH HOH . G 4 HOH A 5 267 14 HOH HOH . G 4 HOH A 6 268 21 HOH HOH . G 4 HOH A 7 269 30 HOH HOH . G 4 HOH A 8 270 35 HOH HOH . G 4 HOH A 9 271 42 HOH HOH . G 4 HOH A 10 272 43 HOH HOH . G 4 HOH A 11 273 50 HOH HOH . G 4 HOH A 12 274 55 HOH HOH . G 4 HOH A 13 275 58 HOH HOH . G 4 HOH A 14 276 60 HOH HOH . G 4 HOH A 15 277 62 HOH HOH . G 4 HOH A 16 278 65 HOH HOH . G 4 HOH A 17 279 66 HOH HOH . G 4 HOH A 18 280 68 HOH HOH . G 4 HOH A 19 281 69 HOH HOH . G 4 HOH A 20 282 70 HOH HOH . G 4 HOH A 21 283 71 HOH HOH . G 4 HOH A 22 284 73 HOH HOH . G 4 HOH A 23 285 75 HOH HOH . G 4 HOH A 24 286 78 HOH HOH . G 4 HOH A 25 287 79 HOH HOH . G 4 HOH A 26 288 81 HOH HOH . G 4 HOH A 27 289 82 HOH HOH . G 4 HOH A 28 290 83 HOH HOH . G 4 HOH A 29 291 84 HOH HOH . G 4 HOH A 30 292 85 HOH HOH . G 4 HOH A 31 293 86 HOH HOH . G 4 HOH A 32 294 87 HOH HOH . G 4 HOH A 33 295 88 HOH HOH . G 4 HOH A 34 296 89 HOH HOH . G 4 HOH A 35 297 90 HOH HOH . G 4 HOH A 36 298 92 HOH HOH . G 4 HOH A 37 299 97 HOH HOH . G 4 HOH A 38 300 98 HOH HOH . G 4 HOH A 39 301 99 HOH HOH . G 4 HOH A 40 302 103 HOH HOH . G 4 HOH A 41 303 104 HOH HOH . G 4 HOH A 42 304 106 HOH HOH . G 4 HOH A 43 305 107 HOH HOH . G 4 HOH A 44 306 108 HOH HOH . G 4 HOH A 45 307 109 HOH HOH . G 4 HOH A 46 308 111 HOH HOH . G 4 HOH A 47 309 112 HOH HOH . G 4 HOH A 48 310 113 HOH HOH . G 4 HOH A 49 311 114 HOH HOH . G 4 HOH A 50 312 115 HOH HOH . G 4 HOH A 51 313 117 HOH HOH . G 4 HOH A 52 314 120 HOH HOH . G 4 HOH A 53 315 121 HOH HOH . G 4 HOH A 54 316 122 HOH HOH . G 4 HOH A 55 317 123 HOH HOH . G 4 HOH A 56 318 124 HOH HOH . G 4 HOH A 57 319 125 HOH HOH . G 4 HOH A 58 320 126 HOH HOH . G 4 HOH A 59 321 127 HOH HOH . G 4 HOH A 60 322 128 HOH HOH . G 4 HOH A 61 323 129 HOH HOH . G 4 HOH A 62 324 130 HOH HOH . G 4 HOH A 63 325 131 HOH HOH . G 4 HOH A 64 326 132 HOH HOH . G 4 HOH A 65 327 134 HOH HOH . G 4 HOH A 66 328 135 HOH HOH . G 4 HOH A 67 329 136 HOH HOH . G 4 HOH A 68 330 137 HOH HOH . G 4 HOH A 69 331 138 HOH HOH . G 4 HOH A 70 332 139 HOH HOH . G 4 HOH A 71 333 140 HOH HOH . G 4 HOH A 72 334 143 HOH HOH . G 4 HOH A 73 335 144 HOH HOH . G 4 HOH A 74 336 145 HOH HOH . G 4 HOH A 75 337 148 HOH HOH . G 4 HOH A 76 338 149 HOH HOH . G 4 HOH A 77 339 150 HOH HOH . G 4 HOH A 78 340 151 HOH HOH . G 4 HOH A 79 341 153 HOH HOH . G 4 HOH A 80 342 156 HOH HOH . G 4 HOH A 81 343 159 HOH HOH . G 4 HOH A 82 344 161 HOH HOH . G 4 HOH A 83 345 163 HOH HOH . G 4 HOH A 84 346 164 HOH HOH . G 4 HOH A 85 347 166 HOH HOH . G 4 HOH A 86 348 168 HOH HOH . G 4 HOH A 87 349 170 HOH HOH . G 4 HOH A 88 350 171 HOH HOH . G 4 HOH A 89 351 178 HOH HOH . G 4 HOH A 90 352 179 HOH HOH . G 4 HOH A 91 353 180 HOH HOH . G 4 HOH A 92 354 181 HOH HOH . G 4 HOH A 93 355 183 HOH HOH . G 4 HOH A 94 356 184 HOH HOH . G 4 HOH A 95 357 188 HOH HOH . G 4 HOH A 96 358 192 HOH HOH . G 4 HOH A 97 359 193 HOH HOH . G 4 HOH A 98 360 194 HOH HOH . G 4 HOH A 99 361 196 HOH HOH . G 4 HOH A 100 362 197 HOH HOH . G 4 HOH A 101 363 198 HOH HOH . G 4 HOH A 102 364 200 HOH HOH . G 4 HOH A 103 365 201 HOH HOH . G 4 HOH A 104 366 202 HOH HOH . G 4 HOH A 105 367 206 HOH HOH . G 4 HOH A 106 368 209 HOH HOH . G 4 HOH A 107 369 210 HOH HOH . G 4 HOH A 108 370 212 HOH HOH . G 4 HOH A 109 371 214 HOH HOH . G 4 HOH A 110 372 217 HOH HOH . G 4 HOH A 111 373 220 HOH HOH . G 4 HOH A 112 374 221 HOH HOH . G 4 HOH A 113 375 223 HOH HOH . G 4 HOH A 114 376 225 HOH HOH . G 4 HOH A 115 377 227 HOH HOH . G 4 HOH A 116 378 228 HOH HOH . G 4 HOH A 117 379 232 HOH HOH . G 4 HOH A 118 380 234 HOH HOH . G 4 HOH A 119 381 236 HOH HOH . H 4 HOH B 1 263 1 HOH HOH . H 4 HOH B 2 264 2 HOH HOH . H 4 HOH B 3 265 3 HOH HOH . H 4 HOH B 4 266 4 HOH HOH . H 4 HOH B 5 267 5 HOH HOH . H 4 HOH B 6 268 7 HOH HOH . H 4 HOH B 7 269 8 HOH HOH . H 4 HOH B 8 270 10 HOH HOH . H 4 HOH B 9 271 12 HOH HOH . H 4 HOH B 10 272 15 HOH HOH . H 4 HOH B 11 273 16 HOH HOH . H 4 HOH B 12 274 17 HOH HOH . H 4 HOH B 13 275 18 HOH HOH . H 4 HOH B 14 276 19 HOH HOH . H 4 HOH B 15 277 20 HOH HOH . H 4 HOH B 16 278 22 HOH HOH . H 4 HOH B 17 279 23 HOH HOH . H 4 HOH B 18 280 24 HOH HOH . H 4 HOH B 19 281 25 HOH HOH . H 4 HOH B 20 282 26 HOH HOH . H 4 HOH B 21 283 27 HOH HOH . H 4 HOH B 22 284 28 HOH HOH . H 4 HOH B 23 285 29 HOH HOH . H 4 HOH B 24 286 31 HOH HOH . H 4 HOH B 25 287 32 HOH HOH . H 4 HOH B 26 288 33 HOH HOH . H 4 HOH B 27 289 34 HOH HOH . H 4 HOH B 28 290 36 HOH HOH . H 4 HOH B 29 291 37 HOH HOH . H 4 HOH B 30 292 38 HOH HOH . H 4 HOH B 31 293 39 HOH HOH . H 4 HOH B 32 294 40 HOH HOH . H 4 HOH B 33 295 41 HOH HOH . H 4 HOH B 34 296 44 HOH HOH . H 4 HOH B 35 297 45 HOH HOH . H 4 HOH B 36 298 46 HOH HOH . H 4 HOH B 37 299 47 HOH HOH . H 4 HOH B 38 300 48 HOH HOH . H 4 HOH B 39 301 49 HOH HOH . H 4 HOH B 40 302 51 HOH HOH . H 4 HOH B 41 303 52 HOH HOH . H 4 HOH B 42 304 53 HOH HOH . H 4 HOH B 43 305 54 HOH HOH . H 4 HOH B 44 306 56 HOH HOH . H 4 HOH B 45 307 57 HOH HOH . H 4 HOH B 46 308 59 HOH HOH . H 4 HOH B 47 309 61 HOH HOH . H 4 HOH B 48 310 63 HOH HOH . H 4 HOH B 49 311 64 HOH HOH . H 4 HOH B 50 312 67 HOH HOH . H 4 HOH B 51 313 72 HOH HOH . H 4 HOH B 52 314 74 HOH HOH . H 4 HOH B 53 315 76 HOH HOH . H 4 HOH B 54 316 77 HOH HOH . H 4 HOH B 55 317 80 HOH HOH . H 4 HOH B 56 318 91 HOH HOH . H 4 HOH B 57 319 93 HOH HOH . H 4 HOH B 58 320 94 HOH HOH . H 4 HOH B 59 321 95 HOH HOH . H 4 HOH B 60 322 96 HOH HOH . H 4 HOH B 61 323 100 HOH HOH . H 4 HOH B 62 324 101 HOH HOH . H 4 HOH B 63 325 102 HOH HOH . H 4 HOH B 64 326 105 HOH HOH . H 4 HOH B 65 327 110 HOH HOH . H 4 HOH B 66 328 116 HOH HOH . H 4 HOH B 67 329 118 HOH HOH . H 4 HOH B 68 330 119 HOH HOH . H 4 HOH B 69 331 133 HOH HOH . H 4 HOH B 70 332 141 HOH HOH . H 4 HOH B 71 333 142 HOH HOH . H 4 HOH B 72 334 146 HOH HOH . H 4 HOH B 73 335 147 HOH HOH . H 4 HOH B 74 336 152 HOH HOH . H 4 HOH B 75 337 154 HOH HOH . H 4 HOH B 76 338 155 HOH HOH . H 4 HOH B 77 339 157 HOH HOH . H 4 HOH B 78 340 158 HOH HOH . H 4 HOH B 79 341 160 HOH HOH . H 4 HOH B 80 342 162 HOH HOH . H 4 HOH B 81 343 165 HOH HOH . H 4 HOH B 82 344 167 HOH HOH . H 4 HOH B 83 345 169 HOH HOH . H 4 HOH B 84 346 172 HOH HOH . H 4 HOH B 85 347 173 HOH HOH . H 4 HOH B 86 348 174 HOH HOH . H 4 HOH B 87 349 175 HOH HOH . H 4 HOH B 88 350 176 HOH HOH . H 4 HOH B 89 351 177 HOH HOH . H 4 HOH B 90 352 182 HOH HOH . H 4 HOH B 91 353 185 HOH HOH . H 4 HOH B 92 354 186 HOH HOH . H 4 HOH B 93 355 187 HOH HOH . H 4 HOH B 94 356 189 HOH HOH . H 4 HOH B 95 357 190 HOH HOH . H 4 HOH B 96 358 191 HOH HOH . H 4 HOH B 97 359 195 HOH HOH . H 4 HOH B 98 360 199 HOH HOH . H 4 HOH B 99 361 203 HOH HOH . H 4 HOH B 100 362 204 HOH HOH . H 4 HOH B 101 363 205 HOH HOH . H 4 HOH B 102 364 207 HOH HOH . H 4 HOH B 103 365 208 HOH HOH . H 4 HOH B 104 366 211 HOH HOH . H 4 HOH B 105 367 213 HOH HOH . H 4 HOH B 106 368 215 HOH HOH . H 4 HOH B 107 369 216 HOH HOH . H 4 HOH B 108 370 218 HOH HOH . H 4 HOH B 109 371 219 HOH HOH . H 4 HOH B 110 372 222 HOH HOH . H 4 HOH B 111 373 224 HOH HOH . H 4 HOH B 112 374 226 HOH HOH . H 4 HOH B 113 375 229 HOH HOH . H 4 HOH B 114 376 230 HOH HOH . H 4 HOH B 115 377 231 HOH HOH . H 4 HOH B 116 378 233 HOH HOH . H 4 HOH B 117 379 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTO . . . D 3 4.975 34.661 147.074 1 25.16 ? C1 PTO 262 A 1 HETATM 2 C C2 PTO . . . D 3 6.354 33.997 147.185 1 23.41 ? C2 PTO 262 A 1 HETATM 3 C C3 PTO . . . D 3 6.359 32.677 147.972 1 23.71 ? C3 PTO 262 A 1 HETATM 4 C C4 PTO . . . D 3 5.418 32.598 149.183 1 22.83 ? C4 PTO 262 A 1 HETATM 5 C C5 PTO . . . D 3 4.095 33.354 148.983 1 24.97 ? C5 PTO 262 A 1 HETATM 6 C C6 PTO . . . D 3 3.455 32.833 147.69 1 24.79 ? C6 PTO 262 A 1 HETATM 7 C C7 PTO . . . D 3 3.982 33.623 146.544 1 24.8 ? C7 PTO 262 A 1 HETATM 8 N N8 PTO . . . D 3 4.464 34.749 148.499 1 25.68 ? N8 PTO 262 A 1 HETATM 9 C C9 PTO . . . D 3 3.325 35.696 148.564 1 23.56 ? C9 PTO 262 A 1 HETATM 10 O O3 PTO . . . D 3 7.68 32.248 148.255 1 24.74 ? O3 PTO 262 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #