data_2AF3 # _model_server_result.job_id pfMTBvZHcEKvBrMp54Nh9g _model_server_result.datetime_utc '2024-12-30 17:01:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2af3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2AF3 # _exptl.entry_id 2AF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AF3 _cell.length_a 114.469 _cell.length_b 114.469 _cell.length_c 127.832 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2AF3 _atom_sites.fract_transf_matrix[1][1] 0.008736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 C 1 503 503 SO4 SO4 . D 3 COA C 1 501 501 COA COA . E 3 COA C 1 502 502 COA COA . F 3 COA D 1 500 500 COA COA . G 4 HOH C 1 504 1 HOH HOH . G 4 HOH C 2 505 2 HOH HOH . G 4 HOH C 3 506 4 HOH HOH . G 4 HOH C 4 507 5 HOH HOH . G 4 HOH C 5 508 8 HOH HOH . G 4 HOH C 6 509 9 HOH HOH . G 4 HOH C 7 510 12 HOH HOH . G 4 HOH C 8 511 14 HOH HOH . G 4 HOH C 9 512 15 HOH HOH . G 4 HOH C 10 513 16 HOH HOH . G 4 HOH C 11 514 17 HOH HOH . G 4 HOH C 12 515 19 HOH HOH . G 4 HOH C 13 516 20 HOH HOH . G 4 HOH C 14 517 21 HOH HOH . G 4 HOH C 15 518 23 HOH HOH . G 4 HOH C 16 519 24 HOH HOH . G 4 HOH C 17 520 25 HOH HOH . G 4 HOH C 18 521 26 HOH HOH . G 4 HOH C 19 522 28 HOH HOH . G 4 HOH C 20 523 37 HOH HOH . G 4 HOH C 21 524 38 HOH HOH . G 4 HOH C 22 525 39 HOH HOH . G 4 HOH C 23 526 41 HOH HOH . G 4 HOH C 24 527 42 HOH HOH . G 4 HOH C 25 528 45 HOH HOH . G 4 HOH C 26 529 46 HOH HOH . G 4 HOH C 27 530 47 HOH HOH . G 4 HOH C 28 531 48 HOH HOH . G 4 HOH C 29 532 49 HOH HOH . G 4 HOH C 30 533 50 HOH HOH . G 4 HOH C 31 534 52 HOH HOH . G 4 HOH C 32 535 54 HOH HOH . G 4 HOH C 33 536 55 HOH HOH . G 4 HOH C 34 537 56 HOH HOH . G 4 HOH C 35 538 57 HOH HOH . G 4 HOH C 36 539 58 HOH HOH . H 4 HOH D 1 501 6 HOH HOH . H 4 HOH D 2 502 11 HOH HOH . H 4 HOH D 3 503 18 HOH HOH . H 4 HOH D 4 504 22 HOH HOH . H 4 HOH D 5 505 27 HOH HOH . H 4 HOH D 6 506 29 HOH HOH . H 4 HOH D 7 507 32 HOH HOH . H 4 HOH D 8 508 35 HOH HOH . H 4 HOH D 9 509 43 HOH HOH . H 4 HOH D 10 510 44 HOH HOH . H 4 HOH D 11 511 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 26.811 42.037 -7.755 1 72.39 ? N1A COA 501 C 1 HETATM 2 C C2A COA . . . D 3 26.93 42.616 -9.002 1 72.28 ? C2A COA 501 C 1 HETATM 3 N N3A COA . . . D 3 25.835 43.234 -9.575 1 73.92 ? N3A COA 501 C 1 HETATM 4 C C4A COA . . . D 3 24.648 43.258 -8.921 1 73.45 ? C4A COA 501 C 1 HETATM 5 C C5A COA . . . D 3 24.505 42.678 -7.672 1 71.99 ? C5A COA 501 C 1 HETATM 6 C C6A COA . . . D 3 25.601 42.059 -7.087 1 70.8 ? C6A COA 501 C 1 HETATM 7 N N6A COA . . . D 3 25.501 41.594 -5.846 1 68.35 ? N6A COA 501 C 1 HETATM 8 N N7A COA . . . D 3 23.226 42.849 -7.26 1 71.46 ? N7A COA 501 C 1 HETATM 9 C C8A COA . . . D 3 22.559 43.527 -8.202 1 73.05 ? C8A COA 501 C 1 HETATM 10 N N9A COA . . . D 3 23.43 43.791 -9.234 1 75.78 ? N9A COA 501 C 1 HETATM 11 C C1B COA . . . D 3 23.108 44.509 -10.479 1 80.29 ? C1B COA 501 C 1 HETATM 12 C C2B COA . . . D 3 21.589 44.61 -10.61 1 83.94 ? C2B COA 501 C 1 HETATM 13 O O2B COA . . . D 3 21.09 43.654 -11.533 1 84.9 ? O2B COA 501 C 1 HETATM 14 C C3B COA . . . D 3 21.318 46.057 -10.995 1 85.69 ? C3B COA 501 C 1 HETATM 15 O O3B COA . . . D 3 20.889 46.251 -12.344 1 91.31 ? O3B COA 501 C 1 HETATM 16 P P3B COA . . . D 3 21.31 45.379 -13.671 1 96.43 ? P3B COA 501 C 1 HETATM 17 O O7A COA . . . D 3 20.218 44.349 -13.974 1 94.36 ? O7A COA 501 C 1 HETATM 18 O O8A COA . . . D 3 22.615 44.622 -13.447 1 94.2 ? O8A COA 501 C 1 HETATM 19 O O9A COA . . . D 3 21.434 46.34 -14.854 1 94.78 ? O9A COA 501 C 1 HETATM 20 C C4B COA . . . D 3 22.642 46.77 -10.726 1 83.7 ? C4B COA 501 C 1 HETATM 21 O O4B COA . . . D 3 23.645 45.812 -10.442 1 81.42 ? O4B COA 501 C 1 HETATM 22 C C5B COA . . . D 3 22.562 47.772 -9.578 1 81.53 ? C5B COA 501 C 1 HETATM 23 O O5B COA . . . D 3 23.767 48.521 -9.588 1 78.94 ? O5B COA 501 C 1 HETATM 24 P P1A COA . . . D 3 23.839 49.98 -10.265 1 74.74 ? P1A COA 501 C 1 HETATM 25 O O1A COA . . . D 3 23.036 51.01 -9.503 1 73.01 ? O1A COA 501 C 1 HETATM 26 O O2A COA . . . D 3 25.271 50.376 -10.517 1 72.7 ? O2A COA 501 C 1 HETATM 27 O O3A COA . . . D 3 23.071 49.692 -11.665 1 76.3 ? O3A COA 501 C 1 HETATM 28 P P2A COA . . . D 3 23.378 50.525 -13.021 1 74.49 ? P2A COA 501 C 1 HETATM 29 O O4A COA . . . D 3 22.34 50.091 -14.033 1 77.02 ? O4A COA 501 C 1 HETATM 30 O O5A COA . . . D 3 23.243 51.994 -12.754 1 72.4 ? O5A COA 501 C 1 HETATM 31 O O6A COA . . . D 3 24.85 50.054 -13.491 1 74.44 ? O6A COA 501 C 1 HETATM 32 C CBP COA . . . D 3 27.175 50.468 -14.073 1 84.76 ? CBP COA 501 C 1 HETATM 33 C CCP COA . . . D 3 25.717 50.932 -14.165 1 80.28 ? CCP COA 501 C 1 HETATM 34 C CDP COA . . . D 3 27.298 48.987 -14.476 1 84.02 ? CDP COA 501 C 1 HETATM 35 C CEP COA . . . D 3 27.994 51.315 -15.06 1 82.76 ? CEP COA 501 C 1 HETATM 36 C CAP COA . . . D 3 27.614 50.657 -12.603 1 87.03 ? CAP COA 501 C 1 HETATM 37 O OAP COA . . . D 3 27.577 49.466 -11.836 1 86.52 ? OAP COA 501 C 1 HETATM 38 C C9P COA . . . D 3 28.82 51.539 -12.351 1 88.9 ? C9P COA 501 C 1 HETATM 39 O O9P COA . . . D 3 28.631 52.93 -12.178 1 88.45 ? O9P COA 501 C 1 HETATM 40 N N8P COA . . . D 3 30.024 50.966 -12.31 1 90.15 ? N8P COA 501 C 1 HETATM 41 C C7P COA . . . D 3 31.125 51.503 -13.098 1 93.52 ? C7P COA 501 C 1 HETATM 42 C C6P COA . . . D 3 32.174 50.457 -13.489 1 94.32 ? C6P COA 501 C 1 HETATM 43 C C5P COA . . . D 3 32.482 49.573 -12.302 1 94.83 ? C5P COA 501 C 1 HETATM 44 O O5P COA . . . D 3 32.234 49.956 -11.143 1 94.57 ? O5P COA 501 C 1 HETATM 45 N N4P COA . . . D 3 32.998 48.38 -12.583 1 94.75 ? N4P COA 501 C 1 HETATM 46 C C3P COA . . . D 3 32.156 47.194 -12.57 1 94.83 ? C3P COA 501 C 1 HETATM 47 C C2P COA . . . D 3 32.905 45.953 -13.043 1 94.42 ? C2P COA 501 C 1 HETATM 48 S S1P COA . . . D 3 32.011 45.051 -14.327 1 91.15 ? S1P COA 501 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #