data_2AF3 # _model_server_result.job_id l15wLDubdWmjC8GZzvaAgw _model_server_result.datetime_utc '2024-12-21 16:04:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2af3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 2AF3 # _exptl.entry_id 2AF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AF3 _cell.length_a 114.469 _cell.length_b 114.469 _cell.length_c 127.832 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 2AF3 _atom_sites.fract_transf_matrix[1][1] 0.008736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 C 1 503 503 SO4 SO4 . D 3 COA C 1 501 501 COA COA . E 3 COA C 1 502 502 COA COA . F 3 COA D 1 500 500 COA COA . G 4 HOH C 1 504 1 HOH HOH . G 4 HOH C 2 505 2 HOH HOH . G 4 HOH C 3 506 4 HOH HOH . G 4 HOH C 4 507 5 HOH HOH . G 4 HOH C 5 508 8 HOH HOH . G 4 HOH C 6 509 9 HOH HOH . G 4 HOH C 7 510 12 HOH HOH . G 4 HOH C 8 511 14 HOH HOH . G 4 HOH C 9 512 15 HOH HOH . G 4 HOH C 10 513 16 HOH HOH . G 4 HOH C 11 514 17 HOH HOH . G 4 HOH C 12 515 19 HOH HOH . G 4 HOH C 13 516 20 HOH HOH . G 4 HOH C 14 517 21 HOH HOH . G 4 HOH C 15 518 23 HOH HOH . G 4 HOH C 16 519 24 HOH HOH . G 4 HOH C 17 520 25 HOH HOH . G 4 HOH C 18 521 26 HOH HOH . G 4 HOH C 19 522 28 HOH HOH . G 4 HOH C 20 523 37 HOH HOH . G 4 HOH C 21 524 38 HOH HOH . G 4 HOH C 22 525 39 HOH HOH . G 4 HOH C 23 526 41 HOH HOH . G 4 HOH C 24 527 42 HOH HOH . G 4 HOH C 25 528 45 HOH HOH . G 4 HOH C 26 529 46 HOH HOH . G 4 HOH C 27 530 47 HOH HOH . G 4 HOH C 28 531 48 HOH HOH . G 4 HOH C 29 532 49 HOH HOH . G 4 HOH C 30 533 50 HOH HOH . G 4 HOH C 31 534 52 HOH HOH . G 4 HOH C 32 535 54 HOH HOH . G 4 HOH C 33 536 55 HOH HOH . G 4 HOH C 34 537 56 HOH HOH . G 4 HOH C 35 538 57 HOH HOH . G 4 HOH C 36 539 58 HOH HOH . H 4 HOH D 1 501 6 HOH HOH . H 4 HOH D 2 502 11 HOH HOH . H 4 HOH D 3 503 18 HOH HOH . H 4 HOH D 4 504 22 HOH HOH . H 4 HOH D 5 505 27 HOH HOH . H 4 HOH D 6 506 29 HOH HOH . H 4 HOH D 7 507 32 HOH HOH . H 4 HOH D 8 508 35 HOH HOH . H 4 HOH D 9 509 43 HOH HOH . H 4 HOH D 10 510 44 HOH HOH . H 4 HOH D 11 511 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 3 21.494 37.112 0.522 1 80.92 ? N1A COA 502 C 1 HETATM 2 C C2A COA . . . E 3 21.463 35.734 0.606 1 80.89 ? C2A COA 502 C 1 HETATM 3 N N3A COA . . . E 3 20.355 35.035 0.164 1 80.7 ? N3A COA 502 C 1 HETATM 4 C C4A COA . . . E 3 19.295 35.712 -0.346 1 81.9 ? C4A COA 502 C 1 HETATM 5 C C5A COA . . . E 3 19.307 37.101 -0.429 1 81.46 ? C5A COA 502 C 1 HETATM 6 C C6A COA . . . E 3 20.418 37.814 0.011 1 80.98 ? C6A COA 502 C 1 HETATM 7 N N6A COA . . . E 3 20.556 39.095 -0.346 1 80.82 ? N6A COA 502 C 1 HETATM 8 N N7A COA . . . E 3 18.133 37.498 -0.971 1 81.78 ? N7A COA 502 C 1 HETATM 9 C C8A COA . . . E 3 17.383 36.402 -1.226 1 82.3 ? C8A COA 502 C 1 HETATM 10 N N9A COA . . . E 3 18.084 35.29 -0.836 1 83.43 ? N9A COA 502 C 1 HETATM 11 C C1B COA . . . E 3 17.79 33.888 -1.177 1 86.27 ? C1B COA 502 C 1 HETATM 12 C C2B COA . . . E 3 16.506 33.315 -0.601 1 87.24 ? C2B COA 502 C 1 HETATM 13 O O2B COA . . . E 3 16.701 32.932 0.749 1 86.21 ? O2B COA 502 C 1 HETATM 14 C C3B COA . . . E 3 16.264 32.137 -1.541 1 88.48 ? C3B COA 502 C 1 HETATM 15 O O3B COA . . . E 3 16.651 30.939 -0.929 1 84.43 ? O3B COA 502 C 1 HETATM 16 P P3B COA . . . E 3 15.77 29.617 -1.087 1 82.48 ? P3B COA 502 C 1 HETATM 17 O O7A COA . . . E 3 16.633 28.501 -0.528 1 81.39 ? O7A COA 502 C 1 HETATM 18 O O8A COA . . . E 3 15.429 29.357 -2.552 1 81.51 ? O8A COA 502 C 1 HETATM 19 O O9A COA . . . E 3 14.496 29.765 -0.268 1 82.15 ? O9A COA 502 C 1 HETATM 20 C C4B COA . . . E 3 17.239 32.356 -2.697 1 92.38 ? C4B COA 502 C 1 HETATM 21 O O4B COA . . . E 3 17.653 33.703 -2.564 1 88.99 ? O4B COA 502 C 1 HETATM 22 C C5B COA . . . E 3 16.683 32.007 -4.083 1 99.28 ? C5B COA 502 C 1 HETATM 23 O O5B COA . . . E 3 16.739 33.114 -4.966 1 107.92 ? O5B COA 502 C 1 HETATM 24 P P1A COA . . . E 3 15.519 34.177 -5.09 1 112.96 ? P1A COA 502 C 1 HETATM 25 O O1A COA . . . E 3 14.358 33.509 -5.791 1 113.32 ? O1A COA 502 C 1 HETATM 26 O O2A COA . . . E 3 15.996 35.342 -5.926 1 113.19 ? O2A COA 502 C 1 HETATM 27 O O3A COA . . . E 3 15.184 34.627 -3.556 1 114.13 ? O3A COA 502 C 1 HETATM 28 P P2A COA . . . E 3 13.707 34.926 -2.966 1 116.68 ? P2A COA 502 C 1 HETATM 29 O O4A COA . . . E 3 12.715 33.953 -3.563 1 117.86 ? O4A COA 502 C 1 HETATM 30 O O5A COA . . . E 3 13.646 34.856 -1.454 1 116.12 ? O5A COA 502 C 1 HETATM 31 O O6A COA . . . E 3 13.351 36.42 -3.485 1 118.31 ? O6A COA 502 C 1 HETATM 32 C CBP COA . . . E 3 13.794 37.672 -5.595 1 119.24 ? CBP COA 502 C 1 HETATM 33 C CCP COA . . . E 3 12.936 36.659 -4.821 1 119.12 ? CCP COA 502 C 1 HETATM 34 C CDP COA . . . E 3 12.948 38.925 -5.801 1 119.82 ? CDP COA 502 C 1 HETATM 35 C CEP COA . . . E 3 14.085 37.063 -6.966 1 119.02 ? CEP COA 502 C 1 HETATM 36 C CAP COA . . . E 3 15.072 38.121 -4.863 1 119.48 ? CAP COA 502 C 1 HETATM 37 O OAP COA . . . E 3 15.528 37.217 -3.88 1 120.58 ? OAP COA 502 C 1 HETATM 38 C C9P COA . . . E 3 16.222 38.497 -5.758 1 119.2 ? C9P COA 502 C 1 HETATM 39 O O9P COA . . . E 3 16.117 39.664 -6.563 1 119.34 ? O9P COA 502 C 1 HETATM 40 N N8P COA . . . E 3 17.299 37.683 -5.692 1 117.64 ? N8P COA 502 C 1 HETATM 41 C C7P COA . . . E 3 18.469 37.753 -6.563 1 115.51 ? C7P COA 502 C 1 HETATM 42 C C6P COA . . . E 3 19.53 38.756 -6.106 1 112.35 ? C6P COA 502 C 1 HETATM 43 C C5P COA . . . E 3 18.865 40.022 -5.614 1 111.29 ? C5P COA 502 C 1 HETATM 44 O O5P COA . . . E 3 18.544 40.905 -6.437 1 111.43 ? O5P COA 502 C 1 HETATM 45 N N4P COA . . . E 3 18.632 40.076 -4.291 1 109.47 ? N4P COA 502 C 1 HETATM 46 C C3P COA . . . E 3 17.995 41.203 -3.614 1 107.45 ? C3P COA 502 C 1 HETATM 47 C C2P COA . . . E 3 17.234 40.781 -2.353 1 106.81 ? C2P COA 502 C 1 HETATM 48 S S1P COA . . . E 3 16.021 42.036 -1.826 1 104.98 ? S1P COA 502 C 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #