data_2AH7 # _model_server_result.job_id RKVJRVloalWawCVgkzp_Fw _model_server_result.datetime_utc '2025-02-05 09:44:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ah7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 2AH7 # _exptl.entry_id 2AH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AH7 _cell.length_a 34.526 _cell.length_b 34.526 _cell.length_c 255.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 X CYS 2 1_555 A SG CYS 122 X CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 40 X CYS 39 1_555 A SG CYS 171 X CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A NE2 HIS 58 X HIS 57 1_555 B FE HEM . X HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 B FE HEM . X HEM 201 1_555 C O HOH . X HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2AH7 _atom_sites.fract_transf_matrix[1][1] 0.028964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM X 1 201 201 HEM HEM . C 3 HOH X 1 301 301 HOH HOH . C 3 HOH X 2 302 302 HOH HOH . C 3 HOH X 3 308 308 HOH HOH . C 3 HOH X 4 309 309 HOH HOH . C 3 HOH X 5 310 310 HOH HOH . C 3 HOH X 6 311 311 HOH HOH . C 3 HOH X 7 312 312 HOH HOH . C 3 HOH X 8 313 313 HOH HOH . C 3 HOH X 9 314 314 HOH HOH . C 3 HOH X 10 317 317 HOH HOH . C 3 HOH X 11 318 318 HOH HOH . C 3 HOH X 12 319 319 HOH HOH . C 3 HOH X 13 320 320 HOH HOH . C 3 HOH X 14 321 321 HOH HOH . C 3 HOH X 15 322 322 HOH HOH . C 3 HOH X 16 323 323 HOH HOH . C 3 HOH X 17 324 324 HOH HOH . C 3 HOH X 18 347 347 HOH HOH . C 3 HOH X 19 348 348 HOH HOH . C 3 HOH X 20 349 349 HOH HOH . C 3 HOH X 21 350 350 HOH HOH . C 3 HOH X 22 351 351 HOH HOH . C 3 HOH X 23 352 352 HOH HOH . C 3 HOH X 24 353 353 HOH HOH . C 3 HOH X 25 354 354 HOH HOH . C 3 HOH X 26 357 357 HOH HOH . C 3 HOH X 27 358 358 HOH HOH . C 3 HOH X 28 359 359 HOH HOH . C 3 HOH X 29 360 360 HOH HOH . C 3 HOH X 30 361 361 HOH HOH . C 3 HOH X 31 362 362 HOH HOH . C 3 HOH X 32 363 363 HOH HOH . C 3 HOH X 33 365 365 HOH HOH . C 3 HOH X 34 367 367 HOH HOH . C 3 HOH X 35 368 368 HOH HOH . C 3 HOH X 36 369 369 HOH HOH . C 3 HOH X 37 370 370 HOH HOH . C 3 HOH X 38 371 371 HOH HOH . C 3 HOH X 39 421 421 HOH HOH . C 3 HOH X 40 422 422 HOH HOH . C 3 HOH X 41 423 423 HOH HOH . C 3 HOH X 42 424 424 HOH HOH . C 3 HOH X 43 425 425 HOH HOH . C 3 HOH X 44 426 426 HOH HOH . C 3 HOH X 45 427 427 HOH HOH . C 3 HOH X 46 428 428 HOH HOH . C 3 HOH X 47 429 429 HOH HOH . C 3 HOH X 48 430 430 HOH HOH . C 3 HOH X 49 433 433 HOH HOH . C 3 HOH X 50 434 434 HOH HOH . C 3 HOH X 51 435 435 HOH HOH . C 3 HOH X 52 436 436 HOH HOH . C 3 HOH X 53 437 437 HOH HOH . C 3 HOH X 54 440 440 HOH HOH . C 3 HOH X 55 441 441 HOH HOH . C 3 HOH X 56 442 442 HOH HOH . C 3 HOH X 57 443 443 HOH HOH . C 3 HOH X 58 444 444 HOH HOH . C 3 HOH X 59 445 445 HOH HOH . C 3 HOH X 60 446 446 HOH HOH . C 3 HOH X 61 447 447 HOH HOH . C 3 HOH X 62 448 448 HOH HOH . C 3 HOH X 63 449 449 HOH HOH . C 3 HOH X 64 450 450 HOH HOH . C 3 HOH X 65 451 451 HOH HOH . C 3 HOH X 66 452 452 HOH HOH . C 3 HOH X 67 453 453 HOH HOH . C 3 HOH X 68 454 454 HOH HOH . C 3 HOH X 69 455 455 HOH HOH . C 3 HOH X 70 456 456 HOH HOH . C 3 HOH X 71 459 459 HOH HOH . C 3 HOH X 72 462 462 HOH HOH . C 3 HOH X 73 463 463 HOH HOH . C 3 HOH X 74 464 464 HOH HOH . C 3 HOH X 75 465 465 HOH HOH . C 3 HOH X 76 466 466 HOH HOH . C 3 HOH X 77 467 467 HOH HOH . C 3 HOH X 78 468 468 HOH HOH . C 3 HOH X 79 470 470 HOH HOH . C 3 HOH X 80 471 471 HOH HOH . C 3 HOH X 81 472 472 HOH HOH . C 3 HOH X 82 475 475 HOH HOH . C 3 HOH X 83 476 476 HOH HOH . C 3 HOH X 84 478 478 HOH HOH . C 3 HOH X 85 480 480 HOH HOH . C 3 HOH X 86 481 481 HOH HOH . C 3 HOH X 87 483 483 HOH HOH . C 3 HOH X 88 486 486 HOH HOH . C 3 HOH X 89 487 487 HOH HOH . C 3 HOH X 90 488 488 HOH HOH . C 3 HOH X 91 489 489 HOH HOH . C 3 HOH X 92 490 490 HOH HOH . C 3 HOH X 93 491 491 HOH HOH . C 3 HOH X 94 492 492 HOH HOH . C 3 HOH X 95 493 493 HOH HOH . C 3 HOH X 96 494 494 HOH HOH . C 3 HOH X 97 495 495 HOH HOH . C 3 HOH X 98 496 496 HOH HOH . C 3 HOH X 99 501 501 HOH HOH . C 3 HOH X 100 502 502 HOH HOH . C 3 HOH X 101 503 503 HOH HOH . C 3 HOH X 102 504 504 HOH HOH . C 3 HOH X 103 505 505 HOH HOH . C 3 HOH X 104 508 508 HOH HOH . C 3 HOH X 105 509 509 HOH HOH . C 3 HOH X 106 510 510 HOH HOH . C 3 HOH X 107 511 511 HOH HOH . C 3 HOH X 108 512 512 HOH HOH . C 3 HOH X 109 517 517 HOH HOH . C 3 HOH X 110 518 518 HOH HOH . C 3 HOH X 111 519 519 HOH HOH . C 3 HOH X 112 521 521 HOH HOH . C 3 HOH X 113 522 522 HOH HOH . C 3 HOH X 114 523 523 HOH HOH . C 3 HOH X 115 524 524 HOH HOH . C 3 HOH X 116 526 526 HOH HOH . C 3 HOH X 117 527 527 HOH HOH . C 3 HOH X 118 529 529 HOH HOH . C 3 HOH X 119 530 530 HOH HOH . C 3 HOH X 120 531 531 HOH HOH . C 3 HOH X 121 533 533 HOH HOH . C 3 HOH X 122 534 534 HOH HOH . C 3 HOH X 123 535 535 HOH HOH . C 3 HOH X 124 537 537 HOH HOH . C 3 HOH X 125 538 538 HOH HOH . C 3 HOH X 126 540 540 HOH HOH . C 3 HOH X 127 543 543 HOH HOH . C 3 HOH X 128 544 544 HOH HOH . C 3 HOH X 129 545 545 HOH HOH . C 3 HOH X 130 546 546 HOH HOH . C 3 HOH X 131 547 547 HOH HOH . C 3 HOH X 132 548 548 HOH HOH . C 3 HOH X 133 549 549 HOH HOH . C 3 HOH X 134 550 550 HOH HOH . C 3 HOH X 135 551 551 HOH HOH . C 3 HOH X 136 552 552 HOH HOH . C 3 HOH X 137 555 555 HOH HOH . C 3 HOH X 138 556 556 HOH HOH . C 3 HOH X 139 557 557 HOH HOH . C 3 HOH X 140 558 558 HOH HOH . C 3 HOH X 141 559 559 HOH HOH . C 3 HOH X 142 560 560 HOH HOH . C 3 HOH X 143 561 561 HOH HOH . C 3 HOH X 144 563 563 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 17.998 14.29 119.87 1 21.1 ? CHA HEM 201 X 1 HETATM 2 C CHB HEM . . . B 2 20.712 12.028 116.604 1 23.12 ? CHB HEM 201 X 1 HETATM 3 C CHC HEM . . . B 2 17.216 12.73 113.387 1 20.29 ? CHC HEM 201 X 1 HETATM 4 C CHD HEM . . . B 2 15.135 15.982 116.266 1 20.27 ? CHD HEM 201 X 1 HETATM 5 C C1A HEM . . . B 2 19.042 13.578 119.325 1 21.12 ? C1A HEM 201 X 1 HETATM 6 C C2A HEM . . . B 2 20.223 13.066 119.998 1 23.65 ? C2A HEM 201 X 1 HETATM 7 C C3A HEM . . . B 2 21.002 12.449 119.094 1 26.04 ? C3A HEM 201 X 1 HETATM 8 C C4A HEM . . . B 2 20.3 12.553 117.802 1 23.68 ? C4A HEM 201 X 1 HETATM 9 C CMA HEM . . . B 2 22.349 11.711 119.274 1 25.92 ? CMA HEM 201 X 1 HETATM 10 C CAA HEM . . . B 2 20.512 13.208 121.51 1 24.38 ? CAA HEM 201 X 1 HETATM 11 C CBA HEM . . . B 2 19.623 12.244 122.278 1 30.43 ? CBA HEM 201 X 1 HETATM 12 C CGA HEM . . . B 2 19.957 12.252 123.743 1 36.5 ? CGA HEM 201 X 1 HETATM 13 O O1A HEM . . . B 2 20.985 11.647 124.047 1 39.01 ? O1A HEM 201 X 1 HETATM 14 O O2A HEM . . . B 2 19.222 12.827 124.6 1 39.97 ? O2A HEM 201 X 1 HETATM 15 C C1B HEM . . . B 2 19.948 11.92 115.45 1 18.02 ? C1B HEM 201 X 1 HETATM 16 C C2B HEM . . . B 2 20.235 11.096 114.289 1 20.18 ? C2B HEM 201 X 1 HETATM 17 C C3B HEM . . . B 2 19.261 11.243 113.398 1 19.7 ? C3B HEM 201 X 1 HETATM 18 C C4B HEM . . . B 2 18.3 12.189 114.006 1 20.62 ? C4B HEM 201 X 1 HETATM 19 C CMB HEM . . . B 2 21.48 10.243 114.1 1 21.26 ? CMB HEM 201 X 1 HETATM 20 C CAB HEM . . . B 2 19.106 10.61 112.02 1 20.57 ? CAB HEM 201 X 1 HETATM 21 C CBB HEM . . . B 2 19.363 9.319 111.717 1 18.98 ? CBB HEM 201 X 1 HETATM 22 C C1C HEM . . . B 2 16.394 13.752 113.838 1 17.29 ? C1C HEM 201 X 1 HETATM 23 C C2C HEM . . . B 2 15.284 14.373 113.103 1 19.74 ? C2C HEM 201 X 1 HETATM 24 C C3C HEM . . . B 2 14.734 15.239 113.936 1 20.77 ? C3C HEM 201 X 1 HETATM 25 C C4C HEM . . . B 2 15.451 15.239 115.163 1 17.84 ? C4C HEM 201 X 1 HETATM 26 C CMC HEM . . . B 2 14.808 13.99 111.668 1 18.34 ? CMC HEM 201 X 1 HETATM 27 C CAC HEM . . . B 2 13.493 16.132 113.786 1 21.73 ? CAC HEM 201 X 1 HETATM 28 C CBC HEM . . . B 2 12.786 16.199 112.686 1 22.44 ? CBC HEM 201 X 1 HETATM 29 C C1D HEM . . . B 2 15.67 15.738 117.51 1 17.98 ? C1D HEM 201 X 1 HETATM 30 C C2D HEM . . . B 2 15.104 16.295 118.745 1 20.5 ? C2D HEM 201 X 1 HETATM 31 C C3D HEM . . . B 2 16.013 15.796 119.834 1 20.53 ? C3D HEM 201 X 1 HETATM 32 C C4D HEM . . . B 2 16.975 14.929 119.215 1 19.01 ? C4D HEM 201 X 1 HETATM 33 C CMD HEM . . . B 2 13.905 17.276 118.874 1 21.48 ? CMD HEM 201 X 1 HETATM 34 C CAD HEM . . . B 2 15.923 16.079 121.364 1 23.02 ? CAD HEM 201 X 1 HETATM 35 C CBD HEM . . . B 2 15.005 15.085 122.044 1 25.06 ? CBD HEM 201 X 1 HETATM 36 C CGD HEM . . . B 2 15.155 15.22 123.571 1 27.63 ? CGD HEM 201 X 1 HETATM 37 O O1D HEM . . . B 2 15.98 15.958 124.111 1 34.18 ? O1D HEM 201 X 1 HETATM 38 O O2D HEM . . . B 2 14.416 14.579 124.256 1 29.38 ? O2D HEM 201 X 1 HETATM 39 N NA HEM . . . B 2 19.138 13.253 117.996 1 19.79 ? NA HEM 201 X 1 HETATM 40 N NB HEM . . . B 2 18.761 12.537 115.256 1 19.78 ? NB HEM 201 X 1 HETATM 41 N NC HEM . . . B 2 16.451 14.319 115.09 1 18.28 ? NC HEM 201 X 1 HETATM 42 N ND HEM . . . B 2 16.74 14.931 117.834 1 18.71 ? ND HEM 201 X 1 HETATM 43 FE FE HEM . . . B 2 17.684 13.619 116.567 1 20.08 ? FE HEM 201 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #