data_2AH8 # _model_server_result.job_id PsejEzmHDM8zynEi6OhKJA _model_server_result.datetime_utc '2025-01-26 21:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ah8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":239}' # _entry.id 2AH8 # _exptl.entry_id 2AH8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AH8 _cell.length_a 126.297 _cell.length_b 126.297 _cell.length_c 78.412 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AH8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA,PQS tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,B,C,D,E 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -26.137333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 145 A CYS 147 1_555 A SG CYS 202 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 145 B CYS 147 1_555 B SG CYS 202 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A C3 GYS 65 A GYS 66 1_555 A N VAL 66 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C3 GYS 65 B GYS 66 1_555 B N VAL 66 B VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 211 n y N1 C5 IMD sing 212 n y N1 HN1 IMD sing 213 n n C2 N3 IMD doub 214 n y C2 H2 IMD sing 215 n n N3 C4 IMD sing 216 n y N3 HN3 IMD sing 217 n n C4 C5 IMD doub 218 n y C4 H4 IMD sing 219 n n C5 H5 IMD sing 220 n n # _atom_sites.entry_id 2AH8 _atom_sites.fract_transf_matrix[1][1] 0.007918 _atom_sites.fract_transf_matrix[1][2] 0.004571 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IMD A 1 239 1 IMD IMD . D 3 HOH A 1 240 1 HOH HOH . D 3 HOH A 2 241 2 HOH HOH . D 3 HOH A 3 242 3 HOH HOH . D 3 HOH A 4 243 5 HOH HOH . D 3 HOH A 5 244 6 HOH HOH . D 3 HOH A 6 245 7 HOH HOH . D 3 HOH A 7 246 8 HOH HOH . D 3 HOH A 8 247 12 HOH HOH . D 3 HOH A 9 248 13 HOH HOH . D 3 HOH A 10 249 15 HOH HOH . D 3 HOH A 11 250 18 HOH HOH . D 3 HOH A 12 251 20 HOH HOH . D 3 HOH A 13 252 21 HOH HOH . D 3 HOH A 14 253 22 HOH HOH . D 3 HOH A 15 254 23 HOH HOH . D 3 HOH A 16 255 26 HOH HOH . D 3 HOH A 17 256 28 HOH HOH . D 3 HOH A 18 257 29 HOH HOH . D 3 HOH A 19 258 31 HOH HOH . D 3 HOH A 20 259 32 HOH HOH . D 3 HOH A 21 260 35 HOH HOH . D 3 HOH A 22 261 37 HOH HOH . D 3 HOH A 23 262 38 HOH HOH . D 3 HOH A 24 263 39 HOH HOH . D 3 HOH A 25 264 43 HOH HOH . D 3 HOH A 26 265 46 HOH HOH . D 3 HOH A 27 266 48 HOH HOH . D 3 HOH A 28 267 49 HOH HOH . D 3 HOH A 29 268 52 HOH HOH . D 3 HOH A 30 269 54 HOH HOH . D 3 HOH A 31 270 55 HOH HOH . D 3 HOH A 32 271 56 HOH HOH . D 3 HOH A 33 272 58 HOH HOH . D 3 HOH A 34 273 61 HOH HOH . D 3 HOH A 35 274 62 HOH HOH . D 3 HOH A 36 275 64 HOH HOH . D 3 HOH A 37 276 65 HOH HOH . D 3 HOH A 38 277 66 HOH HOH . D 3 HOH A 39 278 68 HOH HOH . D 3 HOH A 40 279 70 HOH HOH . D 3 HOH A 41 280 75 HOH HOH . D 3 HOH A 42 281 77 HOH HOH . D 3 HOH A 43 282 78 HOH HOH . D 3 HOH A 44 283 79 HOH HOH . D 3 HOH A 45 284 80 HOH HOH . D 3 HOH A 46 285 81 HOH HOH . D 3 HOH A 47 286 83 HOH HOH . D 3 HOH A 48 287 84 HOH HOH . D 3 HOH A 49 288 86 HOH HOH . D 3 HOH A 50 289 90 HOH HOH . D 3 HOH A 51 290 91 HOH HOH . D 3 HOH A 52 291 92 HOH HOH . D 3 HOH A 53 292 94 HOH HOH . D 3 HOH A 54 293 95 HOH HOH . D 3 HOH A 55 294 96 HOH HOH . D 3 HOH A 56 295 97 HOH HOH . D 3 HOH A 57 296 98 HOH HOH . D 3 HOH A 58 297 99 HOH HOH . D 3 HOH A 59 298 102 HOH HOH . D 3 HOH A 60 299 103 HOH HOH . D 3 HOH A 61 300 105 HOH HOH . D 3 HOH A 62 301 111 HOH HOH . D 3 HOH A 63 302 112 HOH HOH . D 3 HOH A 64 303 115 HOH HOH . D 3 HOH A 65 304 117 HOH HOH . D 3 HOH A 66 305 119 HOH HOH . D 3 HOH A 67 306 120 HOH HOH . D 3 HOH A 68 307 121 HOH HOH . D 3 HOH A 69 308 123 HOH HOH . D 3 HOH A 70 309 124 HOH HOH . D 3 HOH A 71 310 125 HOH HOH . D 3 HOH A 72 311 127 HOH HOH . D 3 HOH A 73 312 129 HOH HOH . D 3 HOH A 74 313 133 HOH HOH . D 3 HOH A 75 314 135 HOH HOH . D 3 HOH A 76 315 137 HOH HOH . D 3 HOH A 77 316 140 HOH HOH . D 3 HOH A 78 317 143 HOH HOH . D 3 HOH A 79 318 145 HOH HOH . D 3 HOH A 80 319 147 HOH HOH . D 3 HOH A 81 320 148 HOH HOH . D 3 HOH A 82 321 149 HOH HOH . D 3 HOH A 83 322 152 HOH HOH . D 3 HOH A 84 323 154 HOH HOH . D 3 HOH A 85 324 155 HOH HOH . D 3 HOH A 86 325 156 HOH HOH . D 3 HOH A 87 326 158 HOH HOH . D 3 HOH A 88 327 159 HOH HOH . D 3 HOH A 89 328 160 HOH HOH . D 3 HOH A 90 329 162 HOH HOH . E 3 HOH B 1 239 4 HOH HOH . E 3 HOH B 2 240 9 HOH HOH . E 3 HOH B 3 241 10 HOH HOH . E 3 HOH B 4 242 11 HOH HOH . E 3 HOH B 5 243 14 HOH HOH . E 3 HOH B 6 244 16 HOH HOH . E 3 HOH B 7 245 17 HOH HOH . E 3 HOH B 8 246 19 HOH HOH . E 3 HOH B 9 247 24 HOH HOH . E 3 HOH B 10 248 25 HOH HOH . E 3 HOH B 11 249 27 HOH HOH . E 3 HOH B 12 250 30 HOH HOH . E 3 HOH B 13 251 33 HOH HOH . E 3 HOH B 14 252 34 HOH HOH . E 3 HOH B 15 253 36 HOH HOH . E 3 HOH B 16 254 40 HOH HOH . E 3 HOH B 17 255 41 HOH HOH . E 3 HOH B 18 256 42 HOH HOH . E 3 HOH B 19 257 44 HOH HOH . E 3 HOH B 20 258 45 HOH HOH . E 3 HOH B 21 259 47 HOH HOH . E 3 HOH B 22 260 50 HOH HOH . E 3 HOH B 23 261 51 HOH HOH . E 3 HOH B 24 262 53 HOH HOH . E 3 HOH B 25 263 57 HOH HOH . E 3 HOH B 26 264 59 HOH HOH . E 3 HOH B 27 265 60 HOH HOH . E 3 HOH B 28 266 63 HOH HOH . E 3 HOH B 29 267 67 HOH HOH . E 3 HOH B 30 268 69 HOH HOH . E 3 HOH B 31 269 71 HOH HOH . E 3 HOH B 32 270 72 HOH HOH . E 3 HOH B 33 271 73 HOH HOH . E 3 HOH B 34 272 74 HOH HOH . E 3 HOH B 35 273 76 HOH HOH . E 3 HOH B 36 274 82 HOH HOH . E 3 HOH B 37 275 85 HOH HOH . E 3 HOH B 38 276 87 HOH HOH . E 3 HOH B 39 277 88 HOH HOH . E 3 HOH B 40 278 89 HOH HOH . E 3 HOH B 41 279 93 HOH HOH . E 3 HOH B 42 280 100 HOH HOH . E 3 HOH B 43 281 101 HOH HOH . E 3 HOH B 44 282 104 HOH HOH . E 3 HOH B 45 283 106 HOH HOH . E 3 HOH B 46 284 107 HOH HOH . E 3 HOH B 47 285 108 HOH HOH . E 3 HOH B 48 286 109 HOH HOH . E 3 HOH B 49 287 110 HOH HOH . E 3 HOH B 50 288 113 HOH HOH . E 3 HOH B 51 289 114 HOH HOH . E 3 HOH B 52 290 116 HOH HOH . E 3 HOH B 53 291 118 HOH HOH . E 3 HOH B 54 292 122 HOH HOH . E 3 HOH B 55 293 126 HOH HOH . E 3 HOH B 56 294 128 HOH HOH . E 3 HOH B 57 295 130 HOH HOH . E 3 HOH B 58 296 131 HOH HOH . E 3 HOH B 59 297 132 HOH HOH . E 3 HOH B 60 298 134 HOH HOH . E 3 HOH B 61 299 136 HOH HOH . E 3 HOH B 62 300 138 HOH HOH . E 3 HOH B 63 301 139 HOH HOH . E 3 HOH B 64 302 141 HOH HOH . E 3 HOH B 65 303 142 HOH HOH . E 3 HOH B 66 304 144 HOH HOH . E 3 HOH B 67 305 146 HOH HOH . E 3 HOH B 68 306 150 HOH HOH . E 3 HOH B 69 307 151 HOH HOH . E 3 HOH B 70 308 153 HOH HOH . E 3 HOH B 71 309 157 HOH HOH . E 3 HOH B 72 310 161 HOH HOH . E 3 HOH B 73 311 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 2 -37.474 46.083 -6.874 1 49.9 ? N1 IMD 239 A 1 HETATM 2 C C2 IMD . . . C 2 -36.415 45.696 -6.139 1 51.13 ? C2 IMD 239 A 1 HETATM 3 N N3 IMD . . . C 2 -36.317 46.541 -5.11 1 57.67 ? N3 IMD 239 A 1 HETATM 4 C C4 IMD . . . C 2 -37.298 47.462 -5.207 1 60.33 ? C4 IMD 239 A 1 HETATM 5 C C5 IMD . . . C 2 -38.05 47.167 -6.335 1 55.87 ? C5 IMD 239 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #