data_2AHC # _model_server_result.job_id n28crZVyJftSTTkWCw-yAQ _model_server_result.datetime_utc '2024-11-24 18:49:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ahc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":266}' # _entry.id 2AHC # _exptl.entry_id 2AHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.139 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-HYDROXY-3-METHOXYBENZOATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.24 _cell.angle_beta 67.4 _cell.angle_gamma 67.17 _cell.entry_id 2AHC _cell.length_a 56.173 _cell.length_b 58.56 _cell.length_c 70.646 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C8 H7 O4 -1' _chem_comp.formula_weight 167.139 _chem_comp.id VNL _chem_comp.mon_nstd_flag . _chem_comp.name 4-HYDROXY-3-METHOXYBENZOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms vanillate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 CO1 VNL doub 376 n y C1 CO2 VNL sing 377 n y C1 CC VNL sing 378 n n CO1 CM1 VNL sing 379 n y CO1 HO1 VNL sing 380 n n CO2 CM2 VNL doub 381 n y CO2 HO2 VNL sing 382 n n CM1 CZ VNL doub 383 n y CM1 HM1 VNL sing 384 n n CM2 OM VNL sing 385 n n CM2 CZ VNL sing 386 n y OM CV VNL sing 387 n n CZ O3 VNL sing 388 n n CC O1 VNL sing 389 n n CC O2 VNL doub 390 n n CV HV1 VNL sing 391 n n CV HV2 VNL sing 392 n n CV HV3 VNL sing 393 n n O3 HO3 VNL sing 394 n n # _atom_sites.entry_id 2AHC _atom_sites.fract_transf_matrix[1][1] 0.017802 _atom_sites.fract_transf_matrix[1][2] -0.007494 _atom_sites.fract_transf_matrix[1][3] -0.005893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018528 _atom_sites.fract_transf_matrix[2][3] -0.00422 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VNL A 1 166 166 VNL VNL . F 2 VNL B 1 266 266 VNL VNL . G 2 VNL C 1 366 366 VNL VNL . H 2 VNL D 1 466 466 VNL VNL . I 3 HOH A 1 201 201 HOH HOH . I 3 HOH A 2 202 202 HOH HOH . I 3 HOH A 3 203 203 HOH HOH . I 3 HOH A 4 603 603 HOH HOH . I 3 HOH A 5 604 604 HOH HOH . I 3 HOH A 6 613 613 HOH HOH . I 3 HOH A 7 619 619 HOH HOH . I 3 HOH A 8 620 620 HOH HOH . I 3 HOH A 9 622 622 HOH HOH . I 3 HOH A 10 623 623 HOH HOH . I 3 HOH A 11 624 624 HOH HOH . I 3 HOH A 12 627 627 HOH HOH . I 3 HOH A 13 644 644 HOH HOH . I 3 HOH A 14 650 650 HOH HOH . I 3 HOH A 15 652 652 HOH HOH . I 3 HOH A 16 669 669 HOH HOH . I 3 HOH A 17 670 670 HOH HOH . I 3 HOH A 18 676 676 HOH HOH . I 3 HOH A 19 678 678 HOH HOH . I 3 HOH A 20 686 686 HOH HOH . I 3 HOH A 21 699 699 HOH HOH . J 3 HOH B 1 301 301 HOH HOH . J 3 HOH B 2 302 302 HOH HOH . J 3 HOH B 3 303 303 HOH HOH . J 3 HOH B 4 605 605 HOH HOH . J 3 HOH B 5 606 606 HOH HOH . J 3 HOH B 6 607 607 HOH HOH . J 3 HOH B 7 614 614 HOH HOH . J 3 HOH B 8 616 616 HOH HOH . J 3 HOH B 9 618 618 HOH HOH . J 3 HOH B 10 628 628 HOH HOH . J 3 HOH B 11 631 631 HOH HOH . J 3 HOH B 12 635 635 HOH HOH . J 3 HOH B 13 636 636 HOH HOH . J 3 HOH B 14 637 637 HOH HOH . J 3 HOH B 15 639 639 HOH HOH . J 3 HOH B 16 641 641 HOH HOH . J 3 HOH B 17 642 642 HOH HOH . J 3 HOH B 18 646 646 HOH HOH . J 3 HOH B 19 655 655 HOH HOH . J 3 HOH B 20 656 656 HOH HOH . J 3 HOH B 21 657 657 HOH HOH . J 3 HOH B 22 659 659 HOH HOH . J 3 HOH B 23 660 660 HOH HOH . J 3 HOH B 24 661 661 HOH HOH . J 3 HOH B 25 667 667 HOH HOH . J 3 HOH B 26 671 671 HOH HOH . J 3 HOH B 27 672 672 HOH HOH . J 3 HOH B 28 673 673 HOH HOH . J 3 HOH B 29 674 674 HOH HOH . J 3 HOH B 30 681 681 HOH HOH . J 3 HOH B 31 683 683 HOH HOH . J 3 HOH B 32 690 690 HOH HOH . J 3 HOH B 33 692 692 HOH HOH . J 3 HOH B 34 693 693 HOH HOH . J 3 HOH B 35 701 701 HOH HOH . J 3 HOH B 36 707 707 HOH HOH . K 3 HOH C 1 401 401 HOH HOH . K 3 HOH C 2 402 402 HOH HOH . K 3 HOH C 3 403 403 HOH HOH . K 3 HOH C 4 609 609 HOH HOH . K 3 HOH C 5 615 615 HOH HOH . K 3 HOH C 6 617 617 HOH HOH . K 3 HOH C 7 629 629 HOH HOH . K 3 HOH C 8 632 632 HOH HOH . K 3 HOH C 9 634 634 HOH HOH . K 3 HOH C 10 638 638 HOH HOH . K 3 HOH C 11 648 648 HOH HOH . K 3 HOH C 12 649 649 HOH HOH . K 3 HOH C 13 651 651 HOH HOH . K 3 HOH C 14 653 653 HOH HOH . K 3 HOH C 15 654 654 HOH HOH . K 3 HOH C 16 662 662 HOH HOH . K 3 HOH C 17 663 663 HOH HOH . K 3 HOH C 18 666 666 HOH HOH . K 3 HOH C 19 677 677 HOH HOH . K 3 HOH C 20 679 679 HOH HOH . K 3 HOH C 21 684 684 HOH HOH . K 3 HOH C 22 687 687 HOH HOH . K 3 HOH C 23 688 688 HOH HOH . K 3 HOH C 24 689 689 HOH HOH . K 3 HOH C 25 694 694 HOH HOH . K 3 HOH C 26 696 696 HOH HOH . K 3 HOH C 27 702 702 HOH HOH . K 3 HOH C 28 703 703 HOH HOH . K 3 HOH C 29 704 704 HOH HOH . K 3 HOH C 30 705 705 HOH HOH . L 3 HOH D 1 501 501 HOH HOH . L 3 HOH D 2 502 502 HOH HOH . L 3 HOH D 3 503 503 HOH HOH . L 3 HOH D 4 601 601 HOH HOH . L 3 HOH D 5 602 602 HOH HOH . L 3 HOH D 6 608 608 HOH HOH . L 3 HOH D 7 610 610 HOH HOH . L 3 HOH D 8 611 611 HOH HOH . L 3 HOH D 9 612 612 HOH HOH . L 3 HOH D 10 621 621 HOH HOH . L 3 HOH D 11 625 625 HOH HOH . L 3 HOH D 12 626 626 HOH HOH . L 3 HOH D 13 630 630 HOH HOH . L 3 HOH D 14 633 633 HOH HOH . L 3 HOH D 15 640 640 HOH HOH . L 3 HOH D 16 643 643 HOH HOH . L 3 HOH D 17 645 645 HOH HOH . L 3 HOH D 18 647 647 HOH HOH . L 3 HOH D 19 658 658 HOH HOH . L 3 HOH D 20 664 664 HOH HOH . L 3 HOH D 21 665 665 HOH HOH . L 3 HOH D 22 668 668 HOH HOH . L 3 HOH D 23 675 675 HOH HOH . L 3 HOH D 24 680 680 HOH HOH . L 3 HOH D 25 682 682 HOH HOH . L 3 HOH D 26 685 685 HOH HOH . L 3 HOH D 27 691 691 HOH HOH . L 3 HOH D 28 695 695 HOH HOH . L 3 HOH D 29 697 697 HOH HOH . L 3 HOH D 30 698 698 HOH HOH . L 3 HOH D 31 700 700 HOH HOH . L 3 HOH D 32 706 706 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VNL . . . F 2 67.285 28.218 23.025 1 21.57 ? C1 VNL 266 B 1 HETATM 2 C CO1 VNL . . . F 2 67.391 26.889 22.583 1 21.21 ? CO1 VNL 266 B 1 HETATM 3 C CO2 VNL . . . F 2 66.004 28.871 22.93 1 22.79 ? CO2 VNL 266 B 1 HETATM 4 C CM1 VNL . . . F 2 66.268 26.203 22.072 1 22.04 ? CM1 VNL 266 B 1 HETATM 5 C CM2 VNL . . . F 2 64.849 28.169 22.407 1 21.14 ? CM2 VNL 266 B 1 HETATM 6 O OM VNL . . . F 2 63.6 28.655 22.564 1 19.55 ? OM VNL 266 B 1 HETATM 7 C CZ VNL . . . F 2 65.007 26.834 21.983 1 20.9 ? CZ VNL 266 B 1 HETATM 8 C CC VNL . . . F 2 68.398 28.871 23.626 1 20.69 ? CC VNL 266 B 1 HETATM 9 C CV VNL . . . F 2 63.347 29.886 23 1 19.43 ? CV VNL 266 B 1 HETATM 10 O O1 VNL . . . F 2 69.459 28.252 23.765 1 19.19 ? O1 VNL 266 B 1 HETATM 11 O O2 VNL . . . F 2 68.281 30.038 23.99 1 18.9 ? O2 VNL 266 B 1 HETATM 12 O O3 VNL . . . F 2 63.941 26.122 21.614 1 18.93 ? O3 VNL 266 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #