data_2AHM # _model_server_result.job_id 6PrgB3OAJKVoIkqBWzSWdw _model_server_result.datetime_utc '2024-11-21 15:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ahm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2005}' # _entry.id 2AHM # _exptl.entry_id 2AHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AHM _cell.length_a 93.6 _cell.length_b 94 _cell.length_c 150.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 93.6 94 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2AHM _atom_sites.fract_transf_matrix[1][1] 0.010684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL A 1 2003 3 GOL GOL . J 3 GOL E 1 2001 1 GOL GOL . K 3 GOL E 1 2004 4 GOL GOL . L 3 GOL F 1 2002 2 GOL GOL . M 3 GOL F 1 2005 5 GOL GOL . N 4 SO4 H 1 1001 1 SO4 SO4 . O 5 HOH A 1 2004 12 HOH HOH . O 5 HOH A 2 2005 23 HOH HOH . O 5 HOH A 3 2006 26 HOH HOH . O 5 HOH A 4 2007 41 HOH HOH . O 5 HOH A 5 2008 46 HOH HOH . O 5 HOH A 6 2009 51 HOH HOH . O 5 HOH A 7 2010 68 HOH HOH . O 5 HOH A 8 2011 85 HOH HOH . O 5 HOH A 9 2012 96 HOH HOH . O 5 HOH A 10 2013 98 HOH HOH . O 5 HOH A 11 2014 104 HOH HOH . O 5 HOH A 12 2015 129 HOH HOH . O 5 HOH A 13 2016 137 HOH HOH . O 5 HOH A 14 2017 149 HOH HOH . P 5 HOH B 1 89 52 HOH HOH . P 5 HOH B 2 90 71 HOH HOH . P 5 HOH B 3 91 86 HOH HOH . Q 5 HOH C 1 89 72 HOH HOH . Q 5 HOH C 2 90 83 HOH HOH . Q 5 HOH C 3 91 95 HOH HOH . Q 5 HOH C 4 92 97 HOH HOH . Q 5 HOH C 5 93 105 HOH HOH . R 5 HOH D 1 89 15 HOH HOH . R 5 HOH D 2 90 61 HOH HOH . R 5 HOH D 3 91 67 HOH HOH . R 5 HOH D 4 92 91 HOH HOH . R 5 HOH D 5 93 111 HOH HOH . R 5 HOH D 6 94 118 HOH HOH . R 5 HOH D 7 95 122 HOH HOH . R 5 HOH D 8 96 125 HOH HOH . R 5 HOH D 9 97 128 HOH HOH . R 5 HOH D 10 98 146 HOH HOH . S 5 HOH E 1 2005 3 HOH HOH . S 5 HOH E 2 2006 4 HOH HOH . S 5 HOH E 3 2007 6 HOH HOH . S 5 HOH E 4 2008 8 HOH HOH . S 5 HOH E 5 2009 9 HOH HOH . S 5 HOH E 6 2010 13 HOH HOH . S 5 HOH E 7 2011 18 HOH HOH . S 5 HOH E 8 2012 29 HOH HOH . S 5 HOH E 9 2013 31 HOH HOH . S 5 HOH E 10 2014 33 HOH HOH . S 5 HOH E 11 2015 37 HOH HOH . S 5 HOH E 12 2016 42 HOH HOH . S 5 HOH E 13 2017 50 HOH HOH . S 5 HOH E 14 2018 56 HOH HOH . S 5 HOH E 15 2019 59 HOH HOH . S 5 HOH E 16 2020 60 HOH HOH . S 5 HOH E 17 2021 62 HOH HOH . S 5 HOH E 18 2022 63 HOH HOH . S 5 HOH E 19 2023 65 HOH HOH . S 5 HOH E 20 2024 66 HOH HOH . S 5 HOH E 21 2025 70 HOH HOH . S 5 HOH E 22 2026 77 HOH HOH . S 5 HOH E 23 2027 81 HOH HOH . S 5 HOH E 24 2028 90 HOH HOH . S 5 HOH E 25 2029 93 HOH HOH . S 5 HOH E 26 2030 94 HOH HOH . S 5 HOH E 27 2031 106 HOH HOH . S 5 HOH E 28 2032 107 HOH HOH . S 5 HOH E 29 2033 113 HOH HOH . S 5 HOH E 30 2034 114 HOH HOH . S 5 HOH E 31 2035 116 HOH HOH . S 5 HOH E 32 2036 123 HOH HOH . S 5 HOH E 33 2037 124 HOH HOH . S 5 HOH E 34 2038 127 HOH HOH . S 5 HOH E 35 2039 131 HOH HOH . S 5 HOH E 36 2040 136 HOH HOH . S 5 HOH E 37 2041 141 HOH HOH . S 5 HOH E 38 2042 143 HOH HOH . S 5 HOH E 39 2043 147 HOH HOH . T 5 HOH F 1 2006 5 HOH HOH . T 5 HOH F 2 2007 22 HOH HOH . T 5 HOH F 3 2008 35 HOH HOH . T 5 HOH F 4 2009 39 HOH HOH . T 5 HOH F 5 2010 43 HOH HOH . T 5 HOH F 6 2011 44 HOH HOH . T 5 HOH F 7 2012 54 HOH HOH . T 5 HOH F 8 2013 58 HOH HOH . T 5 HOH F 9 2014 64 HOH HOH . T 5 HOH F 10 2015 99 HOH HOH . T 5 HOH F 11 2016 102 HOH HOH . T 5 HOH F 12 2017 112 HOH HOH . T 5 HOH F 13 2018 134 HOH HOH . T 5 HOH F 14 2019 135 HOH HOH . T 5 HOH F 15 2020 140 HOH HOH . T 5 HOH F 16 2021 148 HOH HOH . U 5 HOH G 1 204 2 HOH HOH . U 5 HOH G 2 205 7 HOH HOH . U 5 HOH G 3 206 10 HOH HOH . U 5 HOH G 4 207 11 HOH HOH . U 5 HOH G 5 208 14 HOH HOH . U 5 HOH G 6 209 16 HOH HOH . U 5 HOH G 7 210 20 HOH HOH . U 5 HOH G 8 211 24 HOH HOH . U 5 HOH G 9 212 32 HOH HOH . U 5 HOH G 10 213 34 HOH HOH . U 5 HOH G 11 214 38 HOH HOH . U 5 HOH G 12 215 40 HOH HOH . U 5 HOH G 13 216 45 HOH HOH . U 5 HOH G 14 217 53 HOH HOH . U 5 HOH G 15 218 57 HOH HOH . U 5 HOH G 16 219 69 HOH HOH . U 5 HOH G 17 220 75 HOH HOH . U 5 HOH G 18 221 76 HOH HOH . U 5 HOH G 19 222 78 HOH HOH . U 5 HOH G 20 223 79 HOH HOH . U 5 HOH G 21 224 82 HOH HOH . U 5 HOH G 22 225 84 HOH HOH . U 5 HOH G 23 226 88 HOH HOH . U 5 HOH G 24 227 92 HOH HOH . U 5 HOH G 25 228 100 HOH HOH . U 5 HOH G 26 229 101 HOH HOH . U 5 HOH G 27 230 108 HOH HOH . U 5 HOH G 28 231 109 HOH HOH . U 5 HOH G 29 232 115 HOH HOH . U 5 HOH G 30 233 117 HOH HOH . U 5 HOH G 31 234 119 HOH HOH . U 5 HOH G 32 235 121 HOH HOH . U 5 HOH G 33 236 126 HOH HOH . U 5 HOH G 34 237 130 HOH HOH . U 5 HOH G 35 238 138 HOH HOH . U 5 HOH G 36 239 142 HOH HOH . V 5 HOH H 1 1002 1 HOH HOH . V 5 HOH H 2 1003 17 HOH HOH . V 5 HOH H 3 1004 19 HOH HOH . V 5 HOH H 4 1005 21 HOH HOH . V 5 HOH H 5 1006 25 HOH HOH . V 5 HOH H 6 1007 27 HOH HOH . V 5 HOH H 7 1008 28 HOH HOH . V 5 HOH H 8 1009 30 HOH HOH . V 5 HOH H 9 1010 36 HOH HOH . V 5 HOH H 10 1011 47 HOH HOH . V 5 HOH H 11 1012 48 HOH HOH . V 5 HOH H 12 1013 49 HOH HOH . V 5 HOH H 13 1014 55 HOH HOH . V 5 HOH H 14 1015 73 HOH HOH . V 5 HOH H 15 1016 74 HOH HOH . V 5 HOH H 16 1017 80 HOH HOH . V 5 HOH H 17 1018 87 HOH HOH . V 5 HOH H 18 1019 89 HOH HOH . V 5 HOH H 19 1020 103 HOH HOH . V 5 HOH H 20 1021 110 HOH HOH . V 5 HOH H 21 1022 120 HOH HOH . V 5 HOH H 22 1023 132 HOH HOH . V 5 HOH H 23 1024 133 HOH HOH . V 5 HOH H 24 1025 139 HOH HOH . V 5 HOH H 25 1026 144 HOH HOH . V 5 HOH H 26 1027 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 3 66.694 21.337 98.492 1 80.8 ? C1 GOL 2005 F 1 HETATM 2 O O1 GOL . . . M 3 66.695 22.332 97.463 1 103.96 ? O1 GOL 2005 F 1 HETATM 3 C C2 GOL . . . M 3 65.256 20.802 98.886 1 83.13 ? C2 GOL 2005 F 1 HETATM 4 O O2 GOL . . . M 3 65.208 19.387 98.641 1 85.91 ? O2 GOL 2005 F 1 HETATM 5 C C3 GOL . . . M 3 64.095 21.472 98.07 1 86.89 ? C3 GOL 2005 F 1 HETATM 6 O O3 GOL . . . M 3 62.819 21.041 98.571 1 85.44 ? O3 GOL 2005 F 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #