data_2AHO # _model_server_result.job_id ivVu2gV5mfPo4VrDttLjgQ _model_server_result.datetime_utc '2024-11-15 10:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":912}' # _entry.id 2AHO # _exptl.entry_id 2AHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AHO _cell.length_a 39.6 _cell.length_b 112.9 _cell.length_c 194.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 22 A THR 23 1_555 C MG MG . A MG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc2 A OG1 THR 45 A THR 46 1_555 C MG MG . A MG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc3 A O CYS 73 A CYS 74 1_555 D ZN ZN . A ZN 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc4 F O HOH . A HOH 513 1_555 C MG MG . A MG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc5 E O2B GNP . A GNP 912 1_555 C MG MG . A MG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 E O2G GNP . A GNP 912 1_555 C MG MG . A MG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 E N3B GNP . A GNP 912 1_555 C MG MG . A MG 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 2AHO _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 913 913 MG MG . D 4 ZN A 1 914 914 ZN ZN . E 5 GNP A 1 912 912 GNP GNP . F 6 HOH A 1 500 500 HOH HOH . F 6 HOH A 2 501 501 HOH HOH . F 6 HOH A 3 502 502 HOH HOH . F 6 HOH A 4 503 503 HOH HOH . F 6 HOH A 5 504 504 HOH HOH . F 6 HOH A 6 505 505 HOH HOH . F 6 HOH A 7 507 507 HOH HOH . F 6 HOH A 8 508 508 HOH HOH . F 6 HOH A 9 509 509 HOH HOH . F 6 HOH A 10 513 513 HOH HOH . F 6 HOH A 11 514 514 HOH HOH . F 6 HOH A 12 516 516 HOH HOH . F 6 HOH A 13 517 517 HOH HOH . F 6 HOH A 14 518 518 HOH HOH . F 6 HOH A 15 519 519 HOH HOH . F 6 HOH A 16 520 520 HOH HOH . F 6 HOH A 17 521 521 HOH HOH . F 6 HOH A 18 522 522 HOH HOH . F 6 HOH A 19 524 524 HOH HOH . F 6 HOH A 20 525 525 HOH HOH . F 6 HOH A 21 526 526 HOH HOH . F 6 HOH A 22 527 527 HOH HOH . F 6 HOH A 23 528 528 HOH HOH . F 6 HOH A 24 529 529 HOH HOH . F 6 HOH A 25 530 530 HOH HOH . F 6 HOH A 26 532 532 HOH HOH . F 6 HOH A 27 533 533 HOH HOH . F 6 HOH A 28 537 537 HOH HOH . F 6 HOH A 29 538 538 HOH HOH . F 6 HOH A 30 540 540 HOH HOH . G 6 HOH B 1 506 506 HOH HOH . G 6 HOH B 2 510 510 HOH HOH . G 6 HOH B 3 511 511 HOH HOH . G 6 HOH B 4 512 512 HOH HOH . G 6 HOH B 5 515 515 HOH HOH . G 6 HOH B 6 523 523 HOH HOH . G 6 HOH B 7 531 531 HOH HOH . G 6 HOH B 8 534 534 HOH HOH . G 6 HOH B 9 535 535 HOH HOH . G 6 HOH B 10 536 536 HOH HOH . G 6 HOH B 11 539 539 HOH HOH . G 6 HOH B 12 541 541 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 5 25.874 0.7 16.82 1 30.07 ? PG GNP 912 A 1 HETATM 2 O O1G GNP . . . E 5 27.223 0.25 17.302 1 28.44 ? O1G GNP 912 A 1 HETATM 3 O O2G GNP . . . E 5 24.803 0.32 17.828 1 26.95 ? O2G GNP 912 A 1 HETATM 4 O O3G GNP . . . E 5 25.547 0.185 15.466 1 28.39 ? O3G GNP 912 A 1 HETATM 5 N N3B GNP . . . E 5 26.041 2.41 16.778 1 30.27 ? N3B GNP 912 A 1 HETATM 6 P PB GNP . . . E 5 24.789 3.43 16.312 1 31.61 ? PB GNP 912 A 1 HETATM 7 O O1B GNP . . . E 5 24.339 3.154 14.959 1 28.83 ? O1B GNP 912 A 1 HETATM 8 O O2B GNP . . . E 5 23.76 3.389 17.392 1 29.62 ? O2B GNP 912 A 1 HETATM 9 O O3A GNP . . . E 5 25.576 4.857 16.312 1 33.44 ? O3A GNP 912 A 1 HETATM 10 P PA GNP . . . E 5 25.729 5.904 17.448 1 33.63 ? PA GNP 912 A 1 HETATM 11 O O1A GNP . . . E 5 24.419 6.516 17.744 1 32.4 ? O1A GNP 912 A 1 HETATM 12 O O2A GNP . . . E 5 26.513 5.215 18.546 1 31.45 ? O2A GNP 912 A 1 HETATM 13 O O5' GNP . . . E 5 26.577 6.992 16.84 1 35.37 ? O5' GNP 912 A 1 HETATM 14 C C5' GNP . . . E 5 27.936 6.802 16.416 1 39.54 ? C5' GNP 912 A 1 HETATM 15 C C4' GNP . . . E 5 28.531 8.15 16.118 1 43.44 ? C4' GNP 912 A 1 HETATM 16 O O4' GNP . . . E 5 27.84 8.938 15.189 1 44.34 ? O4' GNP 912 A 1 HETATM 17 C C3' GNP . . . E 5 28.653 9.04 17.397 1 44.41 ? C3' GNP 912 A 1 HETATM 18 O O3' GNP . . . E 5 29.934 9.714 17.444 1 44 ? O3' GNP 912 A 1 HETATM 19 C C2' GNP . . . E 5 27.461 10.005 17.222 1 44.55 ? C2' GNP 912 A 1 HETATM 20 O O2' GNP . . . E 5 27.531 11.185 17.953 1 45.25 ? O2' GNP 912 A 1 HETATM 21 C C1' GNP . . . E 5 27.51 10.199 15.734 1 44.2 ? C1' GNP 912 A 1 HETATM 22 N N9 GNP . . . E 5 26.204 10.623 15.211 1 43.54 ? N9 GNP 912 A 1 HETATM 23 C C8 GNP . . . E 5 24.958 9.909 15.46 1 44.61 ? C8 GNP 912 A 1 HETATM 24 N N7 GNP . . . E 5 23.952 10.518 14.876 1 44.11 ? N7 GNP 912 A 1 HETATM 25 C C5 GNP . . . E 5 24.569 11.683 14.214 1 44.32 ? C5 GNP 912 A 1 HETATM 26 C C6 GNP . . . E 5 23.933 12.72 13.421 1 44.37 ? C6 GNP 912 A 1 HETATM 27 O O6 GNP . . . E 5 22.795 12.839 13.145 1 44.88 ? O6 GNP 912 A 1 HETATM 28 N N1 GNP . . . E 5 24.874 13.65 12.965 1 44.08 ? N1 GNP 912 A 1 HETATM 29 C C2 GNP . . . E 5 26.212 13.485 13.31 1 43.91 ? C2 GNP 912 A 1 HETATM 30 N N2 GNP . . . E 5 26.999 14.547 12.735 1 44.53 ? N2 GNP 912 A 1 HETATM 31 N N3 GNP . . . E 5 26.844 12.604 14.005 1 43.25 ? N3 GNP 912 A 1 HETATM 32 C C4 GNP . . . E 5 25.915 11.698 14.449 1 44.14 ? C4 GNP 912 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #