data_2AI1 # _model_server_result.job_id iLkXwVKXkOk9I-N3omYkIQ _model_server_result.datetime_utc '2024-12-03 04:28:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ai1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":293}' # _entry.id 2AI1 # _exptl.entry_id 2AI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.258 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '((2R,4R,6R,6AS)-4-(2-AMINO-6-OXO-1,6-DIHYDROPURIN-9-YL)-6-(HYDROXYMETHYL)-TETRAHYDROFURO[3,4-D][1,3]DIOXOL-2-YL)METHYLPHOSPHONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AI1 _cell.length_a 93.952 _cell.length_b 93.952 _cell.length_c 93.952 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2,3 A,B,C,D,E,F 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_656 -z+3/2,-x,y+3/2 0 0 -1 -1 0 0 0 1 0 140.928 0 140.928 3 'crystal symmetry operation' 10_536 -y,z-3/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 0 -140.928 140.928 4 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -46.976 46.976 93.952 5 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 46.976 93.952 46.976 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 20 1_555 C ZN ZN . A ZN 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A NE2 HIS 20 A HIS 20 12_565 C ZN ZN . A ZN 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A NE2 HIS 20 A HIS 20 6_456 C ZN ZN . A ZN 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 B MG MG . A MG 290 1_555 F O HOH . A HOH 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 B MG MG . A MG 290 1_555 F O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 B MG MG . A MG 290 1_555 F O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 B MG MG . A MG 290 1_555 F O HOH . A HOH 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 B MG MG . A MG 290 1_555 F O HOH . A HOH 2129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 B MG MG . A MG 290 1_555 F O HOH . A HOH 2130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 C ZN ZN . A ZN 291 1_555 F O HOH . A HOH 2126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc11 C ZN ZN . A ZN 291 1_555 F O HOH . A HOH 2126 6_456 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc12 C ZN ZN . A ZN 291 1_555 F O HOH . A HOH 2126 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc13 C ZN ZN . A ZN 291 1_555 F O HOH . A HOH 2127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc14 C ZN ZN . A ZN 291 1_555 F O HOH . A HOH 2127 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc15 C ZN ZN . A ZN 291 1_555 F O HOH . A HOH 2127 6_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C12 H16 N5 O8 P' _chem_comp.formula_weight 389.258 _chem_comp.id P1G _chem_comp.mon_nstd_flag . _chem_comp.name '((2R,4R,6R,6AS)-4-(2-AMINO-6-OXO-1,6-DIHYDROPURIN-9-YL)-6-(HYDROXYMETHYL)-TETRAHYDROFURO[3,4-D][1,3]DIOXOL-2-YL)METHYLPHOSPHONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "GUANOSINE-2',3'-O-ETHYLIDENEPHOSPHONATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P P1G sing 256 n n O3 HO3 P1G sing 257 n n P O4 P1G sing 258 n n P O2 P1G doub 259 n n P C1P P1G sing 260 n n O4 HO4 P1G sing 261 n n C1P C1 P1G sing 262 n n C1P H1P1 P1G sing 263 n n C1P H1P2 P1G sing 264 n n C1 O3' P1G sing 265 n n C1 O2' P1G sing 266 n n C1 H1 P1G sing 267 n n O3' C3' P1G sing 268 n n O2' C2' P1G sing 269 n n C2' C3' P1G sing 270 n n C2' C1' P1G sing 271 n n C2' H2' P1G sing 272 n n C3' C4' P1G sing 273 n n C3' H3' P1G sing 274 n n C4' C5' P1G sing 275 n n C4' O4' P1G sing 276 n n C4' H4' P1G sing 277 n n C5' O5' P1G sing 278 n n C5' "H5'1" P1G sing 279 n n C5' "H5'2" P1G sing 280 n n O5' H5' P1G sing 281 n n O4' C1' P1G sing 282 n n C1' N9 P1G sing 283 n n C1' H1' P1G sing 284 n n N9 C8 P1G sing 285 n y N9 C4 P1G sing 286 n y C8 N7 P1G doub 287 n y C8 H8 P1G sing 288 n n N7 C5 P1G sing 289 n y C5 C4 P1G doub 290 n y C5 C6 P1G sing 291 n y C4 N3 P1G sing 292 n y N3 C2 P1G doub 293 n y C2 N2 P1G sing 294 n n C2 N1 P1G sing 295 n y N2 HN21 P1G sing 296 n n N2 HN22 P1G sing 297 n n N1 C6 P1G sing 298 n y N1 HN1 P1G sing 299 n n C6 O6 P1G doub 300 n n # _atom_sites.entry_id 2AI1 _atom_sites.fract_transf_matrix[1][1] 0.010644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 290 1 MG MG . C 3 ZN A 1 291 2 ZN ZN . D 4 144 A 1 292 3 144 144 . E 5 P1G A 1 293 4 P1G P1G . F 6 HOH A 1 2000 2000 HOH HOH . F 6 HOH A 2 2001 2001 HOH HOH . F 6 HOH A 3 2002 2002 HOH HOH . F 6 HOH A 4 2003 2003 HOH HOH . F 6 HOH A 5 2004 2004 HOH HOH . F 6 HOH A 6 2005 2005 HOH HOH . F 6 HOH A 7 2006 2006 HOH HOH . F 6 HOH A 8 2007 2007 HOH HOH . F 6 HOH A 9 2008 2008 HOH HOH . F 6 HOH A 10 2009 2009 HOH HOH . F 6 HOH A 11 2010 2010 HOH HOH . F 6 HOH A 12 2011 2011 HOH HOH . F 6 HOH A 13 2012 2012 HOH HOH . F 6 HOH A 14 2013 2013 HOH HOH . F 6 HOH A 15 2014 2014 HOH HOH . F 6 HOH A 16 2015 2015 HOH HOH . F 6 HOH A 17 2016 2016 HOH HOH . F 6 HOH A 18 2017 2017 HOH HOH . F 6 HOH A 19 2018 2018 HOH HOH . F 6 HOH A 20 2019 2019 HOH HOH . F 6 HOH A 21 2020 2020 HOH HOH . F 6 HOH A 22 2021 2021 HOH HOH . F 6 HOH A 23 2022 2022 HOH HOH . F 6 HOH A 24 2023 2023 HOH HOH . F 6 HOH A 25 2024 2024 HOH HOH . F 6 HOH A 26 2025 2025 HOH HOH . F 6 HOH A 27 2026 2026 HOH HOH . F 6 HOH A 28 2027 2027 HOH HOH . F 6 HOH A 29 2028 2028 HOH HOH . F 6 HOH A 30 2029 2029 HOH HOH . F 6 HOH A 31 2030 2030 HOH HOH . F 6 HOH A 32 2031 2031 HOH HOH . F 6 HOH A 33 2032 2032 HOH HOH . F 6 HOH A 34 2033 2033 HOH HOH . F 6 HOH A 35 2034 2034 HOH HOH . F 6 HOH A 36 2035 2035 HOH HOH . F 6 HOH A 37 2036 2036 HOH HOH . F 6 HOH A 38 2037 2037 HOH HOH . F 6 HOH A 39 2038 2038 HOH HOH . F 6 HOH A 40 2039 2039 HOH HOH . F 6 HOH A 41 2040 2040 HOH HOH . F 6 HOH A 42 2041 2041 HOH HOH . F 6 HOH A 43 2042 2042 HOH HOH . F 6 HOH A 44 2043 2043 HOH HOH . F 6 HOH A 45 2044 2044 HOH HOH . F 6 HOH A 46 2045 2045 HOH HOH . F 6 HOH A 47 2046 2046 HOH HOH . F 6 HOH A 48 2047 2047 HOH HOH . F 6 HOH A 49 2048 2048 HOH HOH . F 6 HOH A 50 2049 2049 HOH HOH . F 6 HOH A 51 2050 2050 HOH HOH . F 6 HOH A 52 2051 2051 HOH HOH . F 6 HOH A 53 2052 2052 HOH HOH . F 6 HOH A 54 2053 2053 HOH HOH . F 6 HOH A 55 2054 2054 HOH HOH . F 6 HOH A 56 2055 2055 HOH HOH . F 6 HOH A 57 2056 2056 HOH HOH . F 6 HOH A 58 2057 2057 HOH HOH . F 6 HOH A 59 2058 2058 HOH HOH . F 6 HOH A 60 2059 2059 HOH HOH . F 6 HOH A 61 2060 2060 HOH HOH . F 6 HOH A 62 2061 2061 HOH HOH . F 6 HOH A 63 2062 2062 HOH HOH . F 6 HOH A 64 2063 2063 HOH HOH . F 6 HOH A 65 2064 2064 HOH HOH . F 6 HOH A 66 2065 2065 HOH HOH . F 6 HOH A 67 2066 2066 HOH HOH . F 6 HOH A 68 2067 2067 HOH HOH . F 6 HOH A 69 2068 2068 HOH HOH . F 6 HOH A 70 2069 2069 HOH HOH . F 6 HOH A 71 2070 2070 HOH HOH . F 6 HOH A 72 2071 2071 HOH HOH . F 6 HOH A 73 2072 2072 HOH HOH . F 6 HOH A 74 2073 2073 HOH HOH . F 6 HOH A 75 2074 2074 HOH HOH . F 6 HOH A 76 2075 2075 HOH HOH . F 6 HOH A 77 2076 2076 HOH HOH . F 6 HOH A 78 2077 2077 HOH HOH . F 6 HOH A 79 2078 2078 HOH HOH . F 6 HOH A 80 2079 2079 HOH HOH . F 6 HOH A 81 2080 2080 HOH HOH . F 6 HOH A 82 2081 2081 HOH HOH . F 6 HOH A 83 2082 2082 HOH HOH . F 6 HOH A 84 2083 2083 HOH HOH . F 6 HOH A 85 2084 2084 HOH HOH . F 6 HOH A 86 2085 2085 HOH HOH . F 6 HOH A 87 2086 2086 HOH HOH . F 6 HOH A 88 2087 2087 HOH HOH . F 6 HOH A 89 2088 2088 HOH HOH . F 6 HOH A 90 2089 2089 HOH HOH . F 6 HOH A 91 2090 2090 HOH HOH . F 6 HOH A 92 2091 2091 HOH HOH . F 6 HOH A 93 2092 2092 HOH HOH . F 6 HOH A 94 2093 2093 HOH HOH . F 6 HOH A 95 2094 2094 HOH HOH . F 6 HOH A 96 2095 2095 HOH HOH . F 6 HOH A 97 2096 2096 HOH HOH . F 6 HOH A 98 2097 2097 HOH HOH . F 6 HOH A 99 2098 2098 HOH HOH . F 6 HOH A 100 2099 2099 HOH HOH . F 6 HOH A 101 2100 2100 HOH HOH . F 6 HOH A 102 2101 2101 HOH HOH . F 6 HOH A 103 2102 2102 HOH HOH . F 6 HOH A 104 2103 2103 HOH HOH . F 6 HOH A 105 2104 2104 HOH HOH . F 6 HOH A 106 2105 2105 HOH HOH . F 6 HOH A 107 2106 2106 HOH HOH . F 6 HOH A 108 2107 2107 HOH HOH . F 6 HOH A 109 2108 2108 HOH HOH . F 6 HOH A 110 2109 2109 HOH HOH . F 6 HOH A 111 2110 2110 HOH HOH . F 6 HOH A 112 2111 2111 HOH HOH . F 6 HOH A 113 2112 2112 HOH HOH . F 6 HOH A 114 2113 2113 HOH HOH . F 6 HOH A 115 2114 2114 HOH HOH . F 6 HOH A 116 2115 2115 HOH HOH . F 6 HOH A 117 2116 2116 HOH HOH . F 6 HOH A 118 2117 2117 HOH HOH . F 6 HOH A 119 2118 2118 HOH HOH . F 6 HOH A 120 2119 2119 HOH HOH . F 6 HOH A 121 2120 2120 HOH HOH . F 6 HOH A 122 2121 2121 HOH HOH . F 6 HOH A 123 2122 2122 HOH HOH . F 6 HOH A 124 2123 2123 HOH HOH . F 6 HOH A 125 2124 2124 HOH HOH . F 6 HOH A 126 2125 2125 HOH HOH . F 6 HOH A 127 2126 2126 HOH HOH . F 6 HOH A 128 2127 2127 HOH HOH . F 6 HOH A 129 2128 2128 HOH HOH . F 6 HOH A 130 2129 2129 HOH HOH . F 6 HOH A 131 2130 2130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 P1G . . . E 5 68.009 -40.109 97.055 1 20.22 ? O3 P1G 293 A 1 HETATM 2 P P P1G . . . E 5 66.492 -40.567 97.265 1 22.02 ? P P1G 293 A 1 HETATM 3 O O4 P1G . . . E 5 65.653 -39.256 97.681 1 18.46 ? O4 P1G 293 A 1 HETATM 4 O O2 P1G . . . E 5 65.918 -41.187 96.046 1 24.14 ? O2 P1G 293 A 1 HETATM 5 C C1P P1G . . . E 5 66.463 -41.713 98.659 1 22.5 ? C1P P1G 293 A 1 HETATM 6 C C1 P1G . . . E 5 65.228 -42.639 98.621 1 21.76 ? C1 P1G 293 A 1 HETATM 7 O O3' P1G . . . E 5 65.082 -43.368 99.852 1 22.16 ? O3' P1G 293 A 1 HETATM 8 O O2' P1G . . . E 5 65.264 -43.673 97.615 1 18.52 ? O2' P1G 293 A 1 HETATM 9 C C2' P1G . . . E 5 65.78 -44.885 98.198 1 21.58 ? C2' P1G 293 A 1 HETATM 10 C C3' P1G . . . E 5 65.627 -44.696 99.701 1 22.53 ? C3' P1G 293 A 1 HETATM 11 C C4' P1G . . . E 5 67.033 -44.81 100.294 1 24.42 ? C4' P1G 293 A 1 HETATM 12 C C5' P1G . . . E 5 67.325 -46.128 101.03 1 23.48 ? C5' P1G 293 A 1 HETATM 13 O O5' P1G . . . E 5 68.67 -46.148 101.528 1 26.14 ? O5' P1G 293 A 1 HETATM 14 O O4' P1G . . . E 5 67.907 -44.564 99.178 1 23.55 ? O4' P1G 293 A 1 HETATM 15 C C1' P1G . . . E 5 67.285 -45.074 97.981 1 21.92 ? C1' P1G 293 A 1 HETATM 16 N N9 P1G . . . E 5 67.831 -46.426 97.709 1 23.78 ? N9 P1G 293 A 1 HETATM 17 C C8 P1G . . . E 5 69.113 -46.745 97.91 1 25.97 ? C8 P1G 293 A 1 HETATM 18 N N7 P1G . . . E 5 69.333 -48.031 97.652 1 23.45 ? N7 P1G 293 A 1 HETATM 19 C C5 P1G . . . E 5 68.168 -48.547 97.266 1 24.25 ? C5 P1G 293 A 1 HETATM 20 C C4 P1G . . . E 5 67.207 -47.525 97.277 1 24.41 ? C4 P1G 293 A 1 HETATM 21 N N3 P1G . . . E 5 65.942 -47.708 96.82 1 23.26 ? N3 P1G 293 A 1 HETATM 22 C C2 P1G . . . E 5 65.492 -48.877 96.322 1 21.07 ? C2 P1G 293 A 1 HETATM 23 N N2 P1G . . . E 5 64.292 -49.043 95.768 1 22.29 ? N2 P1G 293 A 1 HETATM 24 N N1 P1G . . . E 5 66.419 -49.935 96.309 1 22.47 ? N1 P1G 293 A 1 HETATM 25 C C6 P1G . . . E 5 67.74 -49.784 96.776 1 22.54 ? C6 P1G 293 A 1 HETATM 26 O O6 P1G . . . E 5 68.479 -50.768 96.737 1 22.84 ? O6 P1G 293 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 26 #