data_2AIM # _model_server_result.job_id WItFkD_w0fORMYBg4b5TMA _model_server_result.datetime_utc '2024-11-22 07:57:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":280}' # _entry.id 2AIM # _exptl.entry_id 2AIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.444 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOYL-ARGININE-ALANINE-FLUORO-METHYL KETONE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.2 _cell.angle_gamma 90 _cell.entry_id 2AIM _cell.length_a 43.16 _cell.length_b 51.6 _cell.length_c 45.2 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 101 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf3 A SG CYS 155 A CYS 153 1_555 A SG CYS 203 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B CM ZRA . A ZRA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? # _chem_comp.formula 'C18 H28 F N5 O4' _chem_comp.formula_weight 397.444 _chem_comp.id ZRA _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOYL-ARGININE-ALANINE-FLUORO-METHYL KETONE' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'benzyl [(2S)-5-[(diaminomethyl)amino]-1-{[(2S)-4-fluoro-3-oxobutan-2-yl]amino}-1-oxopentan-2-yl]carbamate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 ZRA sing 376 n n C1 O1 ZRA doub 377 n n C1 O2 ZRA sing 378 n n C2 C3 ZRA sing 379 n n C2 O2 ZRA sing 380 n n C2 H21 ZRA sing 381 n n C2 H22 ZRA sing 382 n n C3 C4 ZRA doub 383 n y C3 C8 ZRA sing 384 n y C4 C5 ZRA sing 385 n y C4 H4 ZRA sing 386 n n C5 C6 ZRA doub 387 n y C5 H5 ZRA sing 388 n n C6 C7 ZRA sing 389 n y C6 H6 ZRA sing 390 n n C7 C8 ZRA doub 391 n y C7 H7 ZRA sing 392 n n C8 H8 ZRA sing 393 n n CA1 CB1 ZRA sing 394 n n CA1 C ZRA sing 395 n n CA1 N1 ZRA sing 396 n n CA1 HA1 ZRA sing 397 n n CB1 CG ZRA sing 398 n n CB1 HB11 ZRA sing 399 n n CB1 HB12 ZRA sing 400 n n CG CD ZRA sing 401 n n CG HG1 ZRA sing 402 n n CG HG2 ZRA sing 403 n n CD NE ZRA sing 404 n n CD HD1 ZRA sing 405 n n CD HD2 ZRA sing 406 n n NE CZ ZRA sing 407 n n NE HE ZRA sing 408 n n CZ NH1 ZRA sing 409 n n CZ NH2 ZRA sing 410 n n CZ HZ ZRA sing 411 n n NH1 HH11 ZRA sing 412 n n NH1 HH12 ZRA sing 413 n n NH2 HH21 ZRA sing 414 n n NH2 HH22 ZRA sing 415 n n C N2 ZRA sing 416 n n C O ZRA doub 417 n n CA2 CB2 ZRA sing 418 n n CA2 CT ZRA sing 419 n n CA2 N2 ZRA sing 420 n n CA2 HA2 ZRA sing 421 n n CB2 HB21 ZRA sing 422 n n CB2 HB22 ZRA sing 423 n n CB2 HB23 ZRA sing 424 n n CT CM ZRA sing 425 n n CT OT ZRA doub 426 n n CM HM1 ZRA sing 427 n n CM HM2 ZRA sing 428 n n CM F1 ZRA sing 429 n n N1 HN1 ZRA sing 430 n n N2 HN2 ZRA sing 431 n n # _atom_sites.entry_id 2AIM _atom_sites.fract_transf_matrix[1][1] 0.02317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010903 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZRA A 1 280 280 ZRA ZRA . C 3 HOH A 1 281 1 HOH HOH . C 3 HOH A 2 282 2 HOH HOH . C 3 HOH A 3 283 3 HOH HOH . C 3 HOH A 4 284 4 HOH HOH . C 3 HOH A 5 285 6 HOH HOH . C 3 HOH A 6 286 7 HOH HOH . C 3 HOH A 7 287 8 HOH HOH . C 3 HOH A 8 288 9 HOH HOH . C 3 HOH A 9 289 10 HOH HOH . C 3 HOH A 10 290 11 HOH HOH . C 3 HOH A 11 291 12 HOH HOH . C 3 HOH A 12 292 13 HOH HOH . C 3 HOH A 13 293 14 HOH HOH . C 3 HOH A 14 294 15 HOH HOH . C 3 HOH A 15 295 16 HOH HOH . C 3 HOH A 16 296 17 HOH HOH . C 3 HOH A 17 297 18 HOH HOH . C 3 HOH A 18 298 19 HOH HOH . C 3 HOH A 19 299 20 HOH HOH . C 3 HOH A 20 300 21 HOH HOH . C 3 HOH A 21 301 22 HOH HOH . C 3 HOH A 22 302 23 HOH HOH . C 3 HOH A 23 303 24 HOH HOH . C 3 HOH A 24 304 25 HOH HOH . C 3 HOH A 25 305 26 HOH HOH . C 3 HOH A 26 306 27 HOH HOH . C 3 HOH A 27 307 28 HOH HOH . C 3 HOH A 28 308 29 HOH HOH . C 3 HOH A 29 309 30 HOH HOH . C 3 HOH A 30 310 31 HOH HOH . C 3 HOH A 31 311 32 HOH HOH . C 3 HOH A 32 312 33 HOH HOH . C 3 HOH A 33 313 34 HOH HOH . C 3 HOH A 34 314 35 HOH HOH . C 3 HOH A 35 315 36 HOH HOH . C 3 HOH A 36 316 37 HOH HOH . C 3 HOH A 37 317 38 HOH HOH . C 3 HOH A 38 318 39 HOH HOH . C 3 HOH A 39 319 40 HOH HOH . C 3 HOH A 40 320 41 HOH HOH . C 3 HOH A 41 321 42 HOH HOH . C 3 HOH A 42 322 43 HOH HOH . C 3 HOH A 43 323 44 HOH HOH . C 3 HOH A 44 324 45 HOH HOH . C 3 HOH A 45 325 46 HOH HOH . C 3 HOH A 46 326 47 HOH HOH . C 3 HOH A 47 327 48 HOH HOH . C 3 HOH A 48 328 49 HOH HOH . C 3 HOH A 49 329 50 HOH HOH . C 3 HOH A 50 330 51 HOH HOH . C 3 HOH A 51 331 52 HOH HOH . C 3 HOH A 52 332 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZRA . . . B 2 1.367 12.451 4.961 1 21.55 ? C1 ZRA 280 A 1 HETATM 2 O O1 ZRA . . . B 2 0.582 13.174 5.576 1 27.74 ? O1 ZRA 280 A 1 HETATM 3 O O2 ZRA . . . B 2 1.489 12.39 3.561 1 12.16 ? O2 ZRA 280 A 1 HETATM 4 C C2 ZRA . . . B 2 0.785 13.115 2.577 1 8.34 ? C2 ZRA 280 A 1 HETATM 5 C C3 ZRA . . . B 2 0.678 13.12 1.062 1 17.33 ? C3 ZRA 280 A 1 HETATM 6 C C4 ZRA . . . B 2 1.841 13.387 0.33 1 15.53 ? C4 ZRA 280 A 1 HETATM 7 C C5 ZRA . . . B 2 1.842 13.229 -1.055 1 17.18 ? C5 ZRA 280 A 1 HETATM 8 C C6 ZRA . . . B 2 0.678 12.814 -1.699 1 22.91 ? C6 ZRA 280 A 1 HETATM 9 C C7 ZRA . . . B 2 -0.486 12.56 -0.966 1 25.06 ? C7 ZRA 280 A 1 HETATM 10 C C8 ZRA . . . B 2 -0.491 12.712 0.423 1 12.95 ? C8 ZRA 280 A 1 HETATM 11 C CA1 ZRA . . . B 2 2.35 11.299 6.902 1 15.25 ? CA1 ZRA 280 A 1 HETATM 12 C CB1 ZRA . . . B 2 2.183 9.839 7.36 1 22.38 ? CB1 ZRA 280 A 1 HETATM 13 C CG ZRA . . . B 2 0.843 9.248 7.03 1 22 ? CG ZRA 280 A 1 HETATM 14 C CD ZRA . A . B 2 -0.196 10.02 7.807 0.35 20.94 ? CD ZRA 280 A 1 HETATM 15 C CD ZRA . B . B 2 -0.239 10.117 7.662 0.79 21.25 ? CD ZRA 280 A 1 HETATM 16 N NE ZRA . A . B 2 -1.553 9.651 7.47 0.35 21.47 ? NE ZRA 280 A 1 HETATM 17 N NE ZRA . B . B 2 -1.659 10.008 7.306 0.79 21.11 ? NE ZRA 280 A 1 HETATM 18 C CZ ZRA . A . B 2 -2.422 10.553 7.008 0.35 16.37 ? CZ ZRA 280 A 1 HETATM 19 C CZ ZRA . B . B 2 -2.272 9.042 6.617 0.79 12.21 ? CZ ZRA 280 A 1 HETATM 20 N NH1 ZRA . A . B 2 -2.089 11.839 6.805 0.35 21.25 ? NH1 ZRA 280 A 1 HETATM 21 N NH1 ZRA . B . B 2 -1.617 7.996 6.115 0.79 17.49 ? NH1 ZRA 280 A 1 HETATM 22 N NH2 ZRA . A . B 2 -3.645 10.136 6.75 0.35 14.37 ? NH2 ZRA 280 A 1 HETATM 23 N NH2 ZRA . B . B 2 -3.593 9.128 6.47 0.79 23.73 ? NH2 ZRA 280 A 1 HETATM 24 C C ZRA . . . B 2 3.829 11.668 6.927 1 9.47 ? C ZRA 280 A 1 HETATM 25 N N1 ZRA . . . B 2 2.068 11.46 5.504 1 16.53 ? N1 ZRA 280 A 1 HETATM 26 O O ZRA . . . B 2 4.684 10.913 6.431 1 9.56 ? O ZRA 280 A 1 HETATM 27 N N2 ZRA . . . B 2 4.109 12.645 7.793 1 8.05 ? N2 ZRA 280 A 1 HETATM 28 C CA2 ZRA . . . B 2 5.449 12.89 8.294 1 13.15 ? CA2 ZRA 280 A 1 HETATM 29 C CT ZRA . . . B 2 6.256 11.778 8.954 1 24.72 ? CT ZRA 280 A 1 HETATM 30 O OT ZRA . . . B 2 7.498 11.77 8.827 1 15.71 ? OT ZRA 280 A 1 HETATM 31 C CB2 ZRA . . . B 2 6.004 14.29 8.223 1 20.3 ? CB2 ZRA 280 A 1 HETATM 32 C CM ZRA . . . B 2 5.787 10.569 9.759 1 15.65 ? CM ZRA 280 A 1 HETATM 33 H HE ZRA . A . B 2 -1.822 8.708 7.525 0.5 0 ? HE ZRA 280 A 1 HETATM 34 H HE ZRA . B . B 2 -2.218 10.788 7.588 0.5 0 ? HE ZRA 280 A 1 HETATM 35 H HH11 ZRA . A . B 2 -1.147 12.186 6.772 0.5 0 ? HH11 ZRA 280 A 1 HETATM 36 H HH11 ZRA . B . B 2 -0.64 7.861 6.173 0.5 0 ? HH11 ZRA 280 A 1 HETATM 37 H HH12 ZRA . A . B 2 -2.787 12.426 6.365 0.5 0 ? HH12 ZRA 280 A 1 HETATM 38 H HH12 ZRA . B . B 2 -2.134 7.275 5.647 0.5 0 ? HH12 ZRA 280 A 1 HETATM 39 H HH21 ZRA . A . B 2 -3.999 9.217 6.873 0.5 0 ? HH21 ZRA 280 A 1 HETATM 40 H HH21 ZRA . B . B 2 -4.133 9.929 6.784 0.5 0 ? HH21 ZRA 280 A 1 HETATM 41 H HH22 ZRA . A . B 2 -4.328 10.854 6.53 0.5 0 ? HH22 ZRA 280 A 1 HETATM 42 H HH22 ZRA . B . B 2 -4.113 8.384 6.026 0.5 0 ? HH22 ZRA 280 A 1 HETATM 43 H HN1 ZRA . . . B 2 2.462 10.791 4.906 1 0 ? HN1 ZRA 280 A 1 HETATM 44 H HN2 ZRA . . . B 2 3.408 13.317 7.923 1 0 ? HN2 ZRA 280 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 430 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #