data_2AIZ # _model_server_result.job_id BFPnfcVEMW58U_l9q-Zr4Q _model_server_result.datetime_utc '2024-11-05 01:18:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 2AIZ # _exptl.entry_id 2AIZ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 293.27 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-beta-muramic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 1 U ALA 3 1_555 B N DGL 2 U DGL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B N ALA 1 U ALA 3 1_555 C C10 AMU . U AMU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C DGL 2 U DGL 4 1_555 B N 6CL 3 U 6CL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C 6CL 3 U 6CL 5 1_555 B N DAL 4 U DAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C DAL 4 U DAL 6 1_555 B N DAL 5 U DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 C O1 AMU . U AMU 101 1_555 D PB UDP . U UDP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? # _chem_comp.formula 'C11 H19 N O8' _chem_comp.formula_weight 293.27 _chem_comp.id AMU _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-beta-muramic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'N-acetyl-muramic acid;BETA-N-ACETYLMURAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AMU sing 40 n n C1 O1 AMU sing 41 n n C1 O5 AMU sing 42 n n C1 H1 AMU sing 43 n n C2 C3 AMU sing 44 n n C2 N2 AMU sing 45 n n C2 H2 AMU sing 46 n n C3 C4 AMU sing 47 n n C3 O3 AMU sing 48 n n C3 H3 AMU sing 49 n n C4 C5 AMU sing 50 n n C4 O4 AMU sing 51 n n C4 H4 AMU sing 52 n n C5 C6 AMU sing 53 n n C5 O5 AMU sing 54 n n C5 H5 AMU sing 55 n n C6 O6 AMU sing 56 n n C6 H61 AMU sing 57 n n C6 H62 AMU sing 58 n n C7 C8 AMU sing 59 n n C7 O7 AMU doub 60 n n C7 N2 AMU sing 61 n n C8 H81 AMU sing 62 n n C8 H82 AMU sing 63 n n C8 H83 AMU sing 64 n n C9 C10 AMU sing 65 n n C9 C11 AMU sing 66 n n C9 O3 AMU sing 67 n n C9 H9 AMU sing 68 n n C10 O10 AMU doub 69 n n C10 O11 AMU sing 70 n n C11 H111 AMU sing 71 n n C11 H112 AMU sing 72 n n C11 H113 AMU sing 73 n n O1 HO1 AMU sing 74 n n O4 HO4 AMU sing 75 n n O6 HO6 AMU sing 76 n n O11 HO11 AMU sing 77 n n N2 HN2 AMU sing 78 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version AMU b-D-GlcpNAc3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 AMU MurNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2AIZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AMU U 1 101 2 AMU AMU . D 4 UDP U 1 102 1 UDP UDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AMU . . . C 3 141.738 11.093 -14.797 1 0 ? C1 AMU 101 U 1 HETATM 2 C C2 AMU . . . C 3 142.741 9.953 -14.736 1 0 ? C2 AMU 101 U 1 HETATM 3 C C3 AMU . . . C 3 142.404 9.181 -13.459 1 0 ? C3 AMU 101 U 1 HETATM 4 C C4 AMU . . . C 3 142.739 10.13 -12.317 1 0 ? C4 AMU 101 U 1 HETATM 5 C C5 AMU . . . C 3 141.68 11.228 -12.42 1 0 ? C5 AMU 101 U 1 HETATM 6 C C6 AMU . . . C 3 141.663 12.215 -11.277 1 0 ? C6 AMU 101 U 1 HETATM 7 C C7 AMU . . . C 3 142.963 9.586 -17.094 1 0 ? C7 AMU 101 U 1 HETATM 8 C C8 AMU . . . C 3 142.463 8.999 -18.057 1 0 ? C8 AMU 101 U 1 HETATM 9 C C9 AMU . . . C 3 142.167 6.807 -13.58 1 0 ? C9 AMU 101 U 1 HETATM 10 C C10 AMU . . . C 3 142.968 5.642 -14.121 1 0 ? C10 AMU 101 U 1 HETATM 11 C C11 AMU . . . C 3 141.424 6.349 -12.345 1 0 ? C11 AMU 101 U 1 HETATM 12 O O1 AMU . . . C 3 141.911 11.832 -15.956 1 0 ? O1 AMU 101 U 1 HETATM 13 O O3 AMU . . . C 3 143.045 7.926 -13.35 1 0 ? O3 AMU 101 U 1 HETATM 14 O O4 AMU . . . C 3 142.601 9.402 -11.102 1 0 ? O4 AMU 101 U 1 HETATM 15 O O5 AMU . . . C 3 141.853 11.957 -13.676 1 0 ? O5 AMU 101 U 1 HETATM 16 O O6 AMU . . . C 3 142.765 13.105 -11.346 1 0 ? O6 AMU 101 U 1 HETATM 17 O O7 AMU . . . C 3 143.603 10.631 -17.223 1 0 ? O7 AMU 101 U 1 HETATM 18 O O10 AMU . . . C 3 142.41 4.626 -14.534 1 0 ? O10 AMU 101 U 1 HETATM 19 N N2 AMU . . . C 3 142.589 9.109 -15.906 1 0 ? N2 AMU 101 U 1 HETATM 20 H H1 AMU . . . C 3 140.713 10.712 -14.872 1 0 ? H1 AMU 101 U 1 HETATM 21 H H2 AMU . . . C 3 143.756 10.343 -14.683 1 0 ? H2 AMU 101 U 1 HETATM 22 H H3 AMU . . . C 3 141.328 9.017 -13.454 1 0 ? H3 AMU 101 U 1 HETATM 23 H H4 AMU . . . C 3 143.739 10.545 -12.425 1 0 ? H4 AMU 101 U 1 HETATM 24 H H5 AMU . . . C 3 140.706 10.736 -12.46 1 0 ? H5 AMU 101 U 1 HETATM 25 H H61 AMU . . . C 3 141.689 11.67 -10.332 1 0 ? H61 AMU 101 U 1 HETATM 26 H H62 AMU . . . C 3 140.731 12.782 -11.308 1 0 ? H62 AMU 101 U 1 HETATM 27 H H81 AMU . . . C 3 142.949 9.307 -18.971 1 0 ? H81 AMU 101 U 1 HETATM 28 H H82 AMU . . . C 3 142.579 7.932 -17.94 1 0 ? H82 AMU 101 U 1 HETATM 29 H H83 AMU . . . C 3 141.41 9.231 -18.124 1 0 ? H83 AMU 101 U 1 HETATM 30 H H9 AMU . . . C 3 141.438 7.095 -14.326 1 0 ? H9 AMU 101 U 1 HETATM 31 H H111 AMU . . . C 3 140.665 7.075 -12.09 1 0 ? H111 AMU 101 U 1 HETATM 32 H H112 AMU . . . C 3 140.959 5.394 -12.538 1 0 ? H112 AMU 101 U 1 HETATM 33 H H113 AMU . . . C 3 142.118 6.252 -11.524 1 0 ? H113 AMU 101 U 1 HETATM 34 H HO4 AMU . . . C 3 143.06 9.924 -10.41 1 0 ? HO4 AMU 101 U 1 HETATM 35 H HO6 AMU . . . C 3 142.856 13.477 -12.225 1 0 ? HO6 AMU 101 U 1 HETATM 36 H HN2 AMU . . . C 3 141.886 8.425 -15.875 1 0 ? HN2 AMU 101 U 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 5608 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #