data_2AJF # _model_server_result.job_id 1-kmzytUePTqn9zs1wx0nw _model_server_result.datetime_utc '2024-11-21 08:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ajf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1053}' # _entry.id 2AJF # _exptl.entry_id 2AJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.97 _cell.angle_gamma 90 _cell.entry_id 2AJF _cell.length_a 82.299 _cell.length_b 119.429 _cell.length_c 113.237 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,H,I,J,K,O,Q,S 1 1 B,D,F,L,M,N,P,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 L N N ? 4 O N N ? 4 P N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 C 1 NAG G 1090 NAG 3 n E NAG 2 C 2 NAG G 1091 NAG 3 n E BMA 3 C 3 BMA G 1092 MAN 3 n F NAG 1 D 1 NAG H 1090 NAG 3 n F NAG 2 D 2 NAG H 1091 NAG 3 n F BMA 3 D 3 BMA H 1092 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 B SG CYS 115 B CYS 133 1_555 B SG CYS 123 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 326 B CYS 344 1_555 B SG CYS 343 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 512 B CYS 530 1_555 B SG CYS 524 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 1 E CYS 323 1_555 C SG CYS 26 E CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 C SG CYS 44 E CYS 366 1_555 C SG CYS 97 E CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 145 E CYS 467 1_555 C SG CYS 152 E CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 D SG CYS 1 F CYS 323 1_555 D SG CYS 26 F CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 D SG CYS 44 F CYS 366 1_555 D SG CYS 97 F CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 D SG CYS 145 F CYS 467 1_555 D SG CYS 152 F CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 35 A ASN 53 1_555 G C1 NAG . A NAG 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 35 A ASN 53 1_555 G C2 NAG . A NAG 1053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? covale ? covale3 A ND2 ASN 72 A ASN 90 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 A ND2 ASN 304 A ASN 322 1_555 H C1 NAG . A NAG 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 A ND2 ASN 528 A ASN 546 1_555 I C1 NAG . A NAG 1546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale6 B ND2 ASN 72 B ASN 90 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B ND2 ASN 304 B ASN 322 1_555 L C1 NAG . B NAG 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 C ND2 ASN 8 E ASN 330 1_555 O C1 NAG . E NAG 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 D ND2 ASN 8 F ASN 330 1_555 P C1 NAG . F NAG 1330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale11 E O4 NAG . C NAG 2 1_555 E C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A NE2 HIS 356 A HIS 374 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc2 A NE2 HIS 360 A HIS 378 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A OE2 GLU 384 A GLU 402 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 A OE1 GLU 384 A GLU 402 1_555 J ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 B NE2 HIS 356 B HIS 374 1_555 M ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc6 B NE2 HIS 360 B HIS 378 1_555 M ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc7 B OE1 GLU 384 B GLU 402 1_555 M ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc8 M ZN ZN . B ZN 901 1_555 R O HOH . B HOH 1909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2AJF _atom_sites.fract_transf_matrix[1][1] 0.012151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000418 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 1053 1053 NAG NAG . H 4 NAG A 1 1322 1322 NAG NAG . I 4 NAG A 1 1546 1546 NAG NAG . J 5 ZN A 1 901 901 ZN ZN . K 6 CL A 1 902 902 CL CL . L 4 NAG B 1 1322 1322 NAG NAG . M 5 ZN B 1 901 901 ZN ZN . N 6 CL B 1 1902 1902 CL CL . O 4 NAG E 1 1330 1330 NAG NAG . P 4 NAG F 1 1330 1330 NAG NAG . Q 7 HOH A 1 1547 2 HOH HOH . Q 7 HOH A 2 1548 3 HOH HOH . Q 7 HOH A 3 1549 4 HOH HOH . Q 7 HOH A 4 1550 5 HOH HOH . Q 7 HOH A 5 1551 6 HOH HOH . Q 7 HOH A 6 1552 7 HOH HOH . Q 7 HOH A 7 1553 8 HOH HOH . Q 7 HOH A 8 1554 9 HOH HOH . Q 7 HOH A 9 1555 10 HOH HOH . Q 7 HOH A 10 1556 11 HOH HOH . Q 7 HOH A 11 1557 12 HOH HOH . Q 7 HOH A 12 1558 13 HOH HOH . Q 7 HOH A 13 1559 14 HOH HOH . Q 7 HOH A 14 1560 15 HOH HOH . Q 7 HOH A 15 1561 16 HOH HOH . Q 7 HOH A 16 1562 17 HOH HOH . Q 7 HOH A 17 1563 18 HOH HOH . Q 7 HOH A 18 1564 19 HOH HOH . Q 7 HOH A 19 1565 20 HOH HOH . Q 7 HOH A 20 1566 21 HOH HOH . Q 7 HOH A 21 1567 22 HOH HOH . Q 7 HOH A 22 1568 23 HOH HOH . Q 7 HOH A 23 1569 24 HOH HOH . Q 7 HOH A 24 1570 25 HOH HOH . Q 7 HOH A 25 1571 26 HOH HOH . Q 7 HOH A 26 1572 27 HOH HOH . Q 7 HOH A 27 1573 28 HOH HOH . Q 7 HOH A 28 1574 29 HOH HOH . Q 7 HOH A 29 1575 30 HOH HOH . Q 7 HOH A 30 1576 31 HOH HOH . Q 7 HOH A 31 1577 32 HOH HOH . Q 7 HOH A 32 1578 33 HOH HOH . Q 7 HOH A 33 1579 34 HOH HOH . Q 7 HOH A 34 1580 35 HOH HOH . Q 7 HOH A 35 1581 37 HOH HOH . Q 7 HOH A 36 1582 38 HOH HOH . R 7 HOH B 1 1903 42 HOH HOH . R 7 HOH B 2 1904 43 HOH HOH . R 7 HOH B 3 1905 44 HOH HOH . R 7 HOH B 4 1906 45 HOH HOH . R 7 HOH B 5 1907 46 HOH HOH . R 7 HOH B 6 1908 47 HOH HOH . R 7 HOH B 7 1909 48 HOH HOH . R 7 HOH B 8 1910 49 HOH HOH . R 7 HOH B 9 1911 50 HOH HOH . R 7 HOH B 10 1912 51 HOH HOH . R 7 HOH B 11 1913 52 HOH HOH . R 7 HOH B 12 1914 53 HOH HOH . R 7 HOH B 13 1915 54 HOH HOH . R 7 HOH B 14 1916 55 HOH HOH . R 7 HOH B 15 1917 56 HOH HOH . R 7 HOH B 16 1918 57 HOH HOH . R 7 HOH B 17 1919 58 HOH HOH . R 7 HOH B 18 1920 59 HOH HOH . R 7 HOH B 19 1921 60 HOH HOH . R 7 HOH B 20 1922 61 HOH HOH . R 7 HOH B 21 1923 62 HOH HOH . R 7 HOH B 22 1924 63 HOH HOH . R 7 HOH B 23 1925 64 HOH HOH . R 7 HOH B 24 1926 65 HOH HOH . S 7 HOH E 1 1 1 HOH HOH . S 7 HOH E 2 36 36 HOH HOH . S 7 HOH E 3 39 39 HOH HOH . S 7 HOH E 4 40 40 HOH HOH . T 7 HOH F 1 41 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 26.353 1.605 79.761 1 90.32 ? C1 NAG 1053 A 1 HETATM 2 C C2 NAG . . . G 4 25.084 0.75 79.892 1 89.85 ? C2 NAG 1053 A 1 HETATM 3 C C3 NAG . . . G 4 24.664 0.454 81.337 1 90.13 ? C3 NAG 1053 A 1 HETATM 4 C C4 NAG . . . G 4 25.847 0.208 82.27 1 89.8 ? C4 NAG 1053 A 1 HETATM 5 C C5 NAG . . . G 4 26.848 1.348 82.134 1 89.81 ? C5 NAG 1053 A 1 HETATM 6 C C6 NAG . . . G 4 28.049 1.111 83.037 1 90.34 ? C6 NAG 1053 A 1 HETATM 7 C C7 NAG . . . G 4 23.333 0.804 78.174 1 89.01 ? C7 NAG 1053 A 1 HETATM 8 C C8 NAG . . . G 4 23.185 1.616 76.918 1 88.88 ? C8 NAG 1053 A 1 HETATM 9 N N2 NAG . . . G 4 23.974 1.391 79.194 1 89.32 ? N2 NAG 1053 A 1 HETATM 10 O O3 NAG . . . G 4 23.826 -0.683 81.341 1 90.47 ? O3 NAG 1053 A 1 HETATM 11 O O4 NAG . . . G 4 25.385 0.098 83.6 1 89.21 ? O4 NAG 1053 A 1 HETATM 12 O O5 NAG . . . G 4 27.314 1.41 80.801 1 90.2 ? O5 NAG 1053 A 1 HETATM 13 O O6 NAG . . . G 4 28.44 2.34 83.632 1 90.83 ? O6 NAG 1053 A 1 HETATM 14 O O7 NAG . . . G 4 22.872 -0.34 78.215 1 88.43 ? O7 NAG 1053 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #