data_2AJP # _model_server_result.job_id kM-c9ttYyzoDsuiBJuU_dQ _model_server_result.datetime_utc '2024-10-19 03:36:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ajp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":501}' # _entry.id 2AJP # _exptl.entry_id 2AJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AJP _cell.length_a 92.132 _cell.length_b 114.971 _cell.length_c 169.261 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 B,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 X N N ? 4 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 132 A ASP 118 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 C MG MG . A MG 401 1_555 X O1B ANP . A ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 C MG MG . A MG 401 1_555 X O2A ANP . A ANP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc4 B OD2 ASP 132 B ASP 118 1_555 Y MG MG . B MG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc5 Y MG MG . B MG 1401 1_555 TA O1B ANP . B ANP 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 Y MG MG . B MG 1401 1_555 TA O2A ANP . B ANP 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2AJP _atom_sites.fract_transf_matrix[1][1] 0.01085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 401 MG MG . D 3 UNX A 1 402 402 UNX UNX . E 3 UNX A 1 403 403 UNX UNX . F 3 UNX A 1 405 405 UNX UNX . G 3 UNX A 1 406 406 UNX UNX . H 3 UNX A 1 407 407 UNX UNX . I 3 UNX A 1 408 408 UNX UNX . J 3 UNX A 1 410 410 UNX UNX . K 3 UNX A 1 413 413 UNX UNX . L 3 UNX A 1 414 414 UNX UNX . M 3 UNX A 1 415 415 UNX UNX . N 3 UNX A 1 416 416 UNX UNX . O 3 UNX A 1 417 417 UNX UNX . P 3 UNX A 1 418 418 UNX UNX . Q 3 UNX A 1 419 419 UNX UNX . R 3 UNX A 1 420 420 UNX UNX . S 3 UNX A 1 421 421 UNX UNX . T 3 UNX A 1 1404 1404 UNX UNX . U 3 UNX A 1 1409 1409 UNX UNX . V 3 UNX A 1 1411 1411 UNX UNX . W 3 UNX A 1 1412 1412 UNX UNX . X 4 ANP A 1 501 501 ANP ANP . Y 2 MG B 1 1401 1401 MG MG . Z 3 UNX B 1 404 404 UNX UNX . AA 3 UNX B 1 409 409 UNX UNX . BA 3 UNX B 1 411 411 UNX UNX . CA 3 UNX B 1 412 412 UNX UNX . DA 3 UNX B 1 1402 1402 UNX UNX . EA 3 UNX B 1 1403 1403 UNX UNX . FA 3 UNX B 1 1405 1405 UNX UNX . GA 3 UNX B 1 1406 1406 UNX UNX . HA 3 UNX B 1 1407 1407 UNX UNX . IA 3 UNX B 1 1408 1408 UNX UNX . JA 3 UNX B 1 1410 1410 UNX UNX . KA 3 UNX B 1 1413 1413 UNX UNX . LA 3 UNX B 1 1414 1414 UNX UNX . MA 3 UNX B 1 1415 1415 UNX UNX . NA 3 UNX B 1 1416 1416 UNX UNX . OA 3 UNX B 1 1417 1417 UNX UNX . PA 3 UNX B 1 1418 1418 UNX UNX . QA 3 UNX B 1 1419 1419 UNX UNX . RA 3 UNX B 1 1420 1420 UNX UNX . SA 3 UNX B 1 1421 1421 UNX UNX . TA 4 ANP B 1 1501 1501 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . X 4 -18.858 -1.427 -46.112 1 36.19 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . X 4 -18.549 -0.923 -44.669 1 27.57 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . X 4 -19.866 -2.667 -46.066 1 25.8 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . X 4 -17.534 -1.629 -46.916 1 28.27 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . X 4 -19.554 1.548 -46.467 1 22.43 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . X 4 -18.154 1.9 -46.045 1 18.68 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . X 4 -20.248 2.419 -47.459 1 21.46 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . X 4 -19.664 -0.12 -47.009 1 25.04 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . X 4 -20.411 2.942 -44.142 1 27.18 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . X 4 -20.657 2.466 -42.757 1 27.73 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . X 4 -19.144 3.717 -44.391 1 28.64 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . X 4 -20.484 1.687 -45.144 1 28.27 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . X 4 -21.632 3.837 -44.694 1 30.74 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . X 4 -22.971 3.332 -44.857 1 31.79 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . X 4 -23.98 4.336 -44.299 1 30.83 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . X 4 -23.678 4.785 -42.936 1 30.26 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . X 4 -23.989 5.622 -45.099 1 29.87 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . X 4 -24.752 5.548 -46.311 1 29.02 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . X 4 -24.655 6.573 -44.142 1 30.78 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . X 4 -26.049 6.414 -44.235 1 33.76 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . X 4 -24.353 6.052 -42.765 1 33.21 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . X 4 -23.619 7.129 -42 1 34.15 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . X 4 -24.014 8.449 -41.793 1 31.74 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . X 4 -23.091 9.132 -41.046 1 29.78 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . X 4 -22.128 8.241 -40.781 1 31.52 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . X 4 -20.876 8.264 -40.052 1 33.12 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . X 4 -20.486 9.377 -39.46 1 31.9 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . X 4 -20.137 7.109 -39.997 1 37.3 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . X 4 -20.537 5.947 -40.599 1 33.44 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . X 4 -21.689 5.883 -41.295 1 30.49 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . X 4 -22.475 6.949 -41.402 1 29.74 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #