data_2AJY # _model_server_result.job_id ZKXmLBCKETDMEIHtGXTI7w _model_server_result.datetime_utc '2024-11-25 04:56:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ajy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":306}' # _entry.id 2AJY # _exptl.entry_id 2AJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AJY _cell.length_a 83.569 _cell.length_b 89.802 _cell.length_c 154.446 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,C,D,E,F,J 2 1,2 B,G,H,I,K 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 89.802 154.446 3 'crystal symmetry operation' 5_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 41.7845 44.901 0 4 'crystal symmetry operation' 8_556 x+1/2,-y+1/2,-z+1 1 0 0 0 -1 0 0 0 -1 41.7845 44.901 154.446 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 B SG CYS 146 H CYS 142 1_555 B SG CYS 201 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A O ASP 1 L ASP 1 1_555 D ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 A N ASP 1 L ASP 1 1_555 D ZN ZN . L ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc3 A OD2 ASP 172 L ASP 167 1_555 C ZN ZN . L ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc4 A OE1 GLU 190 L GLU 185 1_555 E ZN ZN . L ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc5 A OE2 GLU 190 L GLU 185 1_555 E ZN ZN . L ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc6 A NE2 HIS 194 L HIS 189 1_555 E ZN ZN . L ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc7 C ZN ZN . L ZN 301 1_555 J O HOH . L HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc8 C ZN ZN . L ZN 301 1_555 B NE2 HIS 170 H HIS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 E ZN ZN . L ZN 303 1_555 J O HOH . L HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 E ZN ZN . L ZN 303 1_555 B OE1 GLN 197 H GLN 204 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc11 E ZN ZN . L ZN 303 1_555 B NE2 GLN 197 H GLN 204 8_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 B O GLU 1 H GLU 1 1_555 H ZN ZN . H ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc13 B N GLU 1 H GLU 1 1_555 H ZN ZN . H ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc14 B OD1 ASP 73 H ASP 72 1_555 G ZN ZN . H ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc15 B OG SER 75 H SER 74 1_555 G ZN ZN . H ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 2AJY _atom_sites.fract_transf_matrix[1][1] 0.011966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN L 1 301 301 ZN ZN . D 3 ZN L 1 302 302 ZN ZN . E 3 ZN L 1 303 303 ZN ZN . F 4 ECG L 1 304 201 ECG ECG . G 3 ZN H 1 304 304 ZN ZN . H 3 ZN H 1 305 305 ZN ZN . I 5 BEZ H 1 306 202 BEZ BEZ . J 6 HOH L 1 305 5 HOH HOH . J 6 HOH L 2 306 9 HOH HOH . J 6 HOH L 3 307 12 HOH HOH . J 6 HOH L 4 308 14 HOH HOH . J 6 HOH L 5 309 16 HOH HOH . J 6 HOH L 6 310 17 HOH HOH . J 6 HOH L 7 311 20 HOH HOH . J 6 HOH L 8 312 25 HOH HOH . J 6 HOH L 9 313 26 HOH HOH . J 6 HOH L 10 314 28 HOH HOH . J 6 HOH L 11 315 30 HOH HOH . J 6 HOH L 12 316 32 HOH HOH . J 6 HOH L 13 317 33 HOH HOH . J 6 HOH L 14 318 34 HOH HOH . J 6 HOH L 15 319 36 HOH HOH . J 6 HOH L 16 320 38 HOH HOH . J 6 HOH L 17 321 41 HOH HOH . J 6 HOH L 18 322 44 HOH HOH . J 6 HOH L 19 323 45 HOH HOH . J 6 HOH L 20 324 48 HOH HOH . J 6 HOH L 21 325 49 HOH HOH . J 6 HOH L 22 326 52 HOH HOH . J 6 HOH L 23 327 53 HOH HOH . J 6 HOH L 24 328 54 HOH HOH . J 6 HOH L 25 329 55 HOH HOH . J 6 HOH L 26 330 56 HOH HOH . J 6 HOH L 27 331 57 HOH HOH . J 6 HOH L 28 332 60 HOH HOH . J 6 HOH L 29 333 61 HOH HOH . J 6 HOH L 30 334 65 HOH HOH . J 6 HOH L 31 335 66 HOH HOH . J 6 HOH L 32 336 67 HOH HOH . J 6 HOH L 33 337 69 HOH HOH . J 6 HOH L 34 338 70 HOH HOH . J 6 HOH L 35 339 71 HOH HOH . J 6 HOH L 36 340 72 HOH HOH . J 6 HOH L 37 341 73 HOH HOH . J 6 HOH L 38 342 74 HOH HOH . J 6 HOH L 39 343 77 HOH HOH . J 6 HOH L 40 344 81 HOH HOH . J 6 HOH L 41 345 82 HOH HOH . J 6 HOH L 42 346 84 HOH HOH . J 6 HOH L 43 347 88 HOH HOH . J 6 HOH L 44 348 90 HOH HOH . J 6 HOH L 45 349 91 HOH HOH . J 6 HOH L 46 350 96 HOH HOH . J 6 HOH L 47 351 98 HOH HOH . J 6 HOH L 48 352 103 HOH HOH . J 6 HOH L 49 353 104 HOH HOH . J 6 HOH L 50 354 105 HOH HOH . J 6 HOH L 51 355 107 HOH HOH . J 6 HOH L 52 356 108 HOH HOH . J 6 HOH L 53 357 111 HOH HOH . J 6 HOH L 54 358 115 HOH HOH . J 6 HOH L 55 359 117 HOH HOH . J 6 HOH L 56 360 120 HOH HOH . J 6 HOH L 57 361 123 HOH HOH . J 6 HOH L 58 362 124 HOH HOH . J 6 HOH L 59 363 125 HOH HOH . J 6 HOH L 60 364 126 HOH HOH . J 6 HOH L 61 365 127 HOH HOH . J 6 HOH L 62 366 129 HOH HOH . J 6 HOH L 63 367 131 HOH HOH . J 6 HOH L 64 368 132 HOH HOH . J 6 HOH L 65 369 133 HOH HOH . J 6 HOH L 66 370 134 HOH HOH . J 6 HOH L 67 371 137 HOH HOH . J 6 HOH L 68 372 139 HOH HOH . J 6 HOH L 69 373 140 HOH HOH . J 6 HOH L 70 374 141 HOH HOH . J 6 HOH L 71 375 143 HOH HOH . J 6 HOH L 72 376 144 HOH HOH . J 6 HOH L 73 377 146 HOH HOH . J 6 HOH L 74 378 149 HOH HOH . J 6 HOH L 75 379 152 HOH HOH . J 6 HOH L 76 380 153 HOH HOH . J 6 HOH L 77 381 155 HOH HOH . J 6 HOH L 78 382 156 HOH HOH . J 6 HOH L 79 383 157 HOH HOH . J 6 HOH L 80 384 158 HOH HOH . J 6 HOH L 81 385 159 HOH HOH . J 6 HOH L 82 386 160 HOH HOH . J 6 HOH L 83 387 161 HOH HOH . J 6 HOH L 84 388 162 HOH HOH . J 6 HOH L 85 389 163 HOH HOH . J 6 HOH L 86 390 164 HOH HOH . J 6 HOH L 87 391 166 HOH HOH . J 6 HOH L 88 392 174 HOH HOH . J 6 HOH L 89 393 175 HOH HOH . K 6 HOH H 1 307 1 HOH HOH . K 6 HOH H 2 308 2 HOH HOH . K 6 HOH H 3 309 3 HOH HOH . K 6 HOH H 4 310 4 HOH HOH . K 6 HOH H 5 311 6 HOH HOH . K 6 HOH H 6 312 7 HOH HOH . K 6 HOH H 7 313 8 HOH HOH . K 6 HOH H 8 314 10 HOH HOH . K 6 HOH H 9 315 11 HOH HOH . K 6 HOH H 10 316 13 HOH HOH . K 6 HOH H 11 317 15 HOH HOH . K 6 HOH H 12 318 18 HOH HOH . K 6 HOH H 13 319 19 HOH HOH . K 6 HOH H 14 320 21 HOH HOH . K 6 HOH H 15 321 22 HOH HOH . K 6 HOH H 16 322 23 HOH HOH . K 6 HOH H 17 323 24 HOH HOH . K 6 HOH H 18 324 27 HOH HOH . K 6 HOH H 19 325 29 HOH HOH . K 6 HOH H 20 326 31 HOH HOH . K 6 HOH H 21 327 35 HOH HOH . K 6 HOH H 22 328 37 HOH HOH . K 6 HOH H 23 329 39 HOH HOH . K 6 HOH H 24 330 40 HOH HOH . K 6 HOH H 25 331 42 HOH HOH . K 6 HOH H 26 332 43 HOH HOH . K 6 HOH H 27 333 46 HOH HOH . K 6 HOH H 28 334 47 HOH HOH . K 6 HOH H 29 335 50 HOH HOH . K 6 HOH H 30 336 51 HOH HOH . K 6 HOH H 31 337 58 HOH HOH . K 6 HOH H 32 338 59 HOH HOH . K 6 HOH H 33 339 62 HOH HOH . K 6 HOH H 34 340 63 HOH HOH . K 6 HOH H 35 341 64 HOH HOH . K 6 HOH H 36 342 68 HOH HOH . K 6 HOH H 37 343 75 HOH HOH . K 6 HOH H 38 344 76 HOH HOH . K 6 HOH H 39 345 78 HOH HOH . K 6 HOH H 40 346 79 HOH HOH . K 6 HOH H 41 347 80 HOH HOH . K 6 HOH H 42 348 83 HOH HOH . K 6 HOH H 43 349 85 HOH HOH . K 6 HOH H 44 350 86 HOH HOH . K 6 HOH H 45 351 87 HOH HOH . K 6 HOH H 46 352 89 HOH HOH . K 6 HOH H 47 353 92 HOH HOH . K 6 HOH H 48 354 93 HOH HOH . K 6 HOH H 49 355 94 HOH HOH . K 6 HOH H 50 356 95 HOH HOH . K 6 HOH H 51 357 97 HOH HOH . K 6 HOH H 52 358 99 HOH HOH . K 6 HOH H 53 359 100 HOH HOH . K 6 HOH H 54 360 101 HOH HOH . K 6 HOH H 55 361 102 HOH HOH . K 6 HOH H 56 362 106 HOH HOH . K 6 HOH H 57 363 109 HOH HOH . K 6 HOH H 58 364 110 HOH HOH . K 6 HOH H 59 365 112 HOH HOH . K 6 HOH H 60 366 113 HOH HOH . K 6 HOH H 61 367 114 HOH HOH . K 6 HOH H 62 368 116 HOH HOH . K 6 HOH H 63 369 118 HOH HOH . K 6 HOH H 64 370 119 HOH HOH . K 6 HOH H 65 371 121 HOH HOH . K 6 HOH H 66 372 122 HOH HOH . K 6 HOH H 67 373 128 HOH HOH . K 6 HOH H 68 374 130 HOH HOH . K 6 HOH H 69 375 135 HOH HOH . K 6 HOH H 70 376 136 HOH HOH . K 6 HOH H 71 377 138 HOH HOH . K 6 HOH H 72 378 142 HOH HOH . K 6 HOH H 73 379 145 HOH HOH . K 6 HOH H 74 380 147 HOH HOH . K 6 HOH H 75 381 148 HOH HOH . K 6 HOH H 76 382 150 HOH HOH . K 6 HOH H 77 383 151 HOH HOH . K 6 HOH H 78 384 154 HOH HOH . K 6 HOH H 79 385 165 HOH HOH . K 6 HOH H 80 386 167 HOH HOH . K 6 HOH H 81 387 168 HOH HOH . K 6 HOH H 82 388 169 HOH HOH . K 6 HOH H 83 389 170 HOH HOH . K 6 HOH H 84 390 171 HOH HOH . K 6 HOH H 85 391 172 HOH HOH . K 6 HOH H 86 392 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . I 5 13.638 -9.722 35.36 1 55.64 ? C BEZ 306 H 1 HETATM 2 O O1 BEZ . . . I 5 12.493 -10.12 35.316 1 56.24 ? O1 BEZ 306 H 1 HETATM 3 O O2 BEZ . . . I 5 14.436 -10.152 34.505 1 56.46 ? O2 BEZ 306 H 1 HETATM 4 C C1 BEZ . . . I 5 14.093 -8.722 36.439 1 56.01 ? C1 BEZ 306 H 1 HETATM 5 C C2 BEZ . . . I 5 15.36 -8.105 36.242 1 56.57 ? C2 BEZ 306 H 1 HETATM 6 C C3 BEZ . . . I 5 15.765 -7.173 37.26 1 56.78 ? C3 BEZ 306 H 1 HETATM 7 C C4 BEZ . . . I 5 14.967 -6.849 38.424 1 56.6 ? C4 BEZ 306 H 1 HETATM 8 C C5 BEZ . . . I 5 13.689 -7.505 38.574 1 56.08 ? C5 BEZ 306 H 1 HETATM 9 C C6 BEZ . . . I 5 13.267 -8.43 37.582 1 56.12 ? C6 BEZ 306 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #