data_2AKE # _model_server_result.job_id cmpxDpWGyy6Y82Enal5GDA _model_server_result.datetime_utc '2024-11-02 19:25:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ake # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":479}' # _entry.id 2AKE # _exptl.entry_id 2AKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AKE _cell.length_a 133.2 _cell.length_b 133.2 _cell.length_c 138.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+5/4 0 1 0 1 0 0 0 0 -1 0 0 172.875 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'G-C PAIR' hydrog1 A N1 G 1 B G 1 1_555 A N3 C 71 B C 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 C 3 B C 3 1_555 A N1 G 69 B G 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N4 C 3 B C 3 1_555 A O6 G 69 B G 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O2 C 3 B C 3 1_555 A N2 G 69 B G 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 C 4 B C 4 1_555 A N1 G 68 B G 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N4 C 4 B C 4 1_555 A O6 G 68 B G 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O2 C 4 B C 4 1_555 A N2 G 68 B G 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog8 A N3 U 5 B U 5 1_555 A O6 G 67 B G 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog9 A O2 U 5 B U 5 1_555 A N1 G 67 B G 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 C 6 B C 6 1_555 A N1 G 66 B G 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 C 6 B C 6 1_555 A O6 G 66 B G 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 C 6 B C 6 1_555 A N2 G 66 B G 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 G 7 B G 7 1_555 A N3 C 65 B C 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 G 7 B G 7 1_555 A O2 C 65 B C 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 G 7 B G 7 1_555 A N4 C 65 B C 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog16 A N2 G 9 B G 9 1_555 A O6 G 44 B G 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog17 A N1 G 10 B G 10 1_555 A O2 C 24 B C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog18 A N4 C 11 B C 11 1_555 A O6 G 23 B G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 G 12 B G 12 1_555 A N3 C 22 B C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 G 12 B G 12 1_555 A O2 C 22 B C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 G 12 B G 12 1_555 A N4 C 22 B C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog22 A O2 C 13 B C 13 1_555 A N1 G 21 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog23 A N6 A 14 B A 14 1_555 A N3 A 20 B A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog24 A O4 U 16 B U 16 1_555 A N2 G 56 B G 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog25 A N1 G 25 B G 26 1_555 A N1 A 43 B A 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog26 A O4 U 26 B U 27 1_555 A N6 A 42 B A 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog27 A N4 C 27 B C 28 1_555 A O6 G 41 B G 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 U 28 B U 29 1_555 A N1 A 40 B A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O4 U 28 B U 29 1_555 A N6 A 40 B A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 G 29 B G 30 1_555 A N3 C 39 B C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 G 29 B G 30 1_555 A O2 C 39 B C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 G 29 B G 30 1_555 A N4 C 39 B C 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 A 30 B A 31 1_555 A N3 U 38 B U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N6 A 30 B A 31 1_555 A O4 U 38 B U 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog35 A O2 C 31 B C 32 1_555 A N6 A 37 B A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog36 A N1 G 48 B G 49 1_555 A O2 U 64 B U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog37 A O6 G 48 B G 49 1_555 A N3 U 64 B U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 C 49 B C 50 1_555 A N1 G 63 B G 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 C 49 B C 50 1_555 A O6 G 63 B G 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 C 49 B C 50 1_555 A N2 G 63 B G 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N1 G 50 B G 51 1_555 A N3 C 62 B C 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N2 G 50 B G 51 1_555 A O2 C 62 B C 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A O6 G 50 B G 51 1_555 A N4 C 62 B C 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A N3 U 51 B U 52 1_555 A N1 A 61 B A 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A O4 U 51 B U 52 1_555 A N6 A 61 B A 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N1 G 52 B G 53 1_555 A N3 C 60 B C 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A N2 G 52 B G 53 1_555 A O2 C 60 B C 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A O6 G 52 B G 53 1_555 A N4 C 60 B C 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog49 A O2 U 53 B U 54 1_555 A N6 A 57 B A 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 423 n n N H TRP sing 424 n n N H2 TRP sing 425 n n CA C TRP sing 426 n n CA CB TRP sing 427 n n CA HA TRP sing 428 n n C O TRP doub 429 n n C OXT TRP sing 430 n n CB CG TRP sing 431 n n CB HB2 TRP sing 432 n n CB HB3 TRP sing 433 n n CG CD1 TRP doub 434 n y CG CD2 TRP sing 435 n y CD1 NE1 TRP sing 436 n y CD1 HD1 TRP sing 437 n n CD2 CE2 TRP doub 438 n y CD2 CE3 TRP sing 439 n y NE1 CE2 TRP sing 440 n y NE1 HE1 TRP sing 441 n n CE2 CZ2 TRP sing 442 n y CE3 CZ3 TRP doub 443 n y CE3 HE3 TRP sing 444 n n CZ2 CH2 TRP doub 445 n y CZ2 HZ2 TRP sing 446 n n CZ3 CH2 TRP sing 447 n y CZ3 HZ3 TRP sing 448 n n CH2 HH2 TRP sing 449 n n OXT HXT TRP sing 450 n n # _atom_sites.entry_id 2AKE _atom_sites.fract_transf_matrix[1][1] 0.007508 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 478 364 SO4 SO4 . D 4 TRP A 1 479 350 TRP TRP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . D 4 13.184 33.569 92.737 1 43.24 ? N TRP 479 A 1 HETATM 2 C CA TRP . . . D 4 11.927 33.948 93.426 1 44.81 ? CA TRP 479 A 1 HETATM 3 C C TRP . . . D 4 12.16 34.057 94.871 1 47 ? C TRP 479 A 1 HETATM 4 O O TRP . . . D 4 13.243 33.843 95.387 1 49.6 ? O TRP 479 A 1 HETATM 5 C CB TRP . . . D 4 10.886 32.84 93.236 1 43.25 ? CB TRP 479 A 1 HETATM 6 C CG TRP . . . D 4 10.483 32.577 91.8 1 40.35 ? CG TRP 479 A 1 HETATM 7 C CD1 TRP . . . D 4 10.96 31.505 91.054 1 39.07 ? CD1 TRP 479 A 1 HETATM 8 C CD2 TRP . . . D 4 9.618 33.357 91.09 1 38.43 ? CD2 TRP 479 A 1 HETATM 9 N NE1 TRP . . . D 4 10.385 31.613 89.85 1 37.93 ? NE1 TRP 479 A 1 HETATM 10 C CE2 TRP . . . D 4 9.585 32.69 89.818 1 37.93 ? CE2 TRP 479 A 1 HETATM 11 C CE3 TRP . . . D 4 8.835 34.561 91.34 1 37.6 ? CE3 TRP 479 A 1 HETATM 12 C CZ2 TRP . . . D 4 8.733 33.262 88.758 1 37.57 ? CZ2 TRP 479 A 1 HETATM 13 C CZ3 TRP . . . D 4 8.017 35.109 90.32 1 36.67 ? CZ3 TRP 479 A 1 HETATM 14 C CH2 TRP . . . D 4 7.954 34.474 89.025 1 38.04 ? CH2 TRP 479 A 1 HETATM 15 O OXT TRP . . . D 4 11.033 34.432 95.654 1 48.55 ? OXT TRP 479 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 15 #