data_2AKF # _model_server_result.job_id ZGjFFaPjTtsV7jJpoTowsg _model_server_result.datetime_utc '2024-11-18 13:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2akf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 2AKF # _exptl.entry_id 2AKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.51 _cell.angle_beta 96.85 _cell.angle_gamma 119.63 _cell.entry_id 2AKF _cell.length_a 23.587 _cell.length_b 23.569 _cell.length_c 46.402 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 B,E,F,G,I 2 1 A,D,H 2 2 C,J 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_665 x+1,y+1,z 1 0 0 0 1 0 0 0 1 11.934556 20.487028 0 3 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 -11.652444 20.487028 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D ZN ZN . A ZN 1 1_555 H O HOH . A HOH 21 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 D ZN ZN . A ZN 1 1_555 A OE2 GLU 6 A GLU 435 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc3 D ZN ZN . A ZN 1 1_555 A OE1 GLU 6 A GLU 435 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 D ZN ZN . A ZN 1 1_555 A OE2 GLU 6 A GLU 435 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 D ZN ZN . A ZN 1 1_555 B OE2 GLU 6 B GLU 435 1_455 ? A ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 D ZN ZN . A ZN 1 1_555 B OE1 GLU 6 B GLU 435 1_455 ? B ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc7 D ZN ZN . A ZN 1 1_555 B OE2 GLU 6 B GLU 435 1_455 ? B ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc8 D ZN ZN . A ZN 1 1_555 C OE2 GLU 6 C GLU 435 1_565 ? A ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc9 D ZN ZN . A ZN 1 1_555 C OE2 GLU 6 C GLU 435 1_565 ? B ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc10 A OE2 GLU 27 A GLU 456 1_665 E ZN ZN . B ZN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? metalc ? metalc11 E ZN ZN . B ZN 2 1_555 I O HOH . B HOH 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc12 E ZN ZN . B ZN 2 1_555 B OE1 GLU 27 B GLU 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc13 E ZN ZN . B ZN 2 1_555 C OE1 GLU 27 C GLU 456 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc14 E ZN ZN . B ZN 2 1_555 C OE2 GLU 27 C GLU 456 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc15 F ZN ZN . B ZN 3 1_555 I O HOH . B HOH 14 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc16 F ZN ZN . B ZN 3 1_555 I O HOH . B HOH 14 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.693 ? metalc ? metalc17 F ZN ZN . B ZN 3 1_555 I O HOH . B HOH 15 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc18 F ZN ZN . B ZN 3 1_555 B OD2 ASP 23 B ASP 452 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc19 F ZN ZN . B ZN 3 1_555 B OD2 ASP 23 B ASP 452 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc20 F ZN ZN . B ZN 3 1_555 B OE2 GLU 27 B GLU 456 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc21 F ZN ZN . B ZN 3 1_555 C OE2 GLU 20 C GLU 449 1_565 ? B ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc22 G ZN ZN . B ZN 4 1_555 I O HOH . B HOH 15 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc23 G ZN ZN . B ZN 4 1_555 I O HOH . B HOH 15 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc24 G ZN ZN . B ZN 4 1_555 I O HOH . B HOH 37 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.704 ? metalc ? metalc25 G ZN ZN . B ZN 4 1_555 I O HOH . B HOH 37 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc26 G ZN ZN . B ZN 4 1_555 I O HOH . B HOH 90 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc27 G ZN ZN . B ZN 4 1_555 I O HOH . B HOH 90 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc28 G ZN ZN . B ZN 4 1_555 B OE1 GLU 20 B GLU 449 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc29 G ZN ZN . B ZN 4 1_555 B OE2 GLU 20 B GLU 449 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc30 G ZN ZN . B ZN 4 1_555 B OE1 GLU 20 B GLU 449 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2AKF _atom_sites.fract_transf_matrix[1][1] 0.042396 _atom_sites.fract_transf_matrix[1][2] 0.024114 _atom_sites.fract_transf_matrix[1][3] 0.008021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.048811 _atom_sites.fract_transf_matrix[2][3] 0.005854 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 1 1 ZN ZN2 . E 2 ZN B 1 2 2 ZN ZN2 . F 2 ZN B 1 3 3 ZN ZN2 . G 2 ZN B 1 4 4 ZN ZN2 . H 3 HOH A 1 5 5 HOH HOH . H 3 HOH A 2 6 6 HOH HOH . H 3 HOH A 3 7 7 HOH HOH . H 3 HOH A 4 9 9 HOH HOH . H 3 HOH A 5 11 11 HOH HOH . H 3 HOH A 6 12 12 HOH HOH . H 3 HOH A 7 16 16 HOH HOH . H 3 HOH A 8 20 20 HOH HOH . H 3 HOH A 9 21 21 HOH HOH . H 3 HOH A 10 26 26 HOH HOH . H 3 HOH A 11 34 34 HOH HOH . H 3 HOH A 12 43 43 HOH HOH . H 3 HOH A 13 45 45 HOH HOH . H 3 HOH A 14 47 47 HOH HOH . H 3 HOH A 15 49 49 HOH HOH . H 3 HOH A 16 50 50 HOH HOH . H 3 HOH A 17 53 53 HOH HOH . H 3 HOH A 18 54 54 HOH HOH . H 3 HOH A 19 57 57 HOH HOH . H 3 HOH A 20 62 62 HOH HOH . H 3 HOH A 21 71 71 HOH HOH . H 3 HOH A 22 73 73 HOH HOH . H 3 HOH A 23 76 76 HOH HOH . H 3 HOH A 24 80 80 HOH HOH . H 3 HOH A 25 81 81 HOH HOH . H 3 HOH A 26 85 85 HOH HOH . H 3 HOH A 27 86 86 HOH HOH . H 3 HOH A 28 88 88 HOH HOH . H 3 HOH A 29 89 89 HOH HOH . H 3 HOH A 30 91 91 HOH HOH . H 3 HOH A 31 92 92 HOH HOH . H 3 HOH A 32 99 99 HOH HOH . I 3 HOH B 1 10 10 HOH HOH . I 3 HOH B 2 13 13 HOH HOH . I 3 HOH B 3 14 14 HOH HOH . I 3 HOH B 4 15 15 HOH HOH . I 3 HOH B 5 17 17 HOH HOH . I 3 HOH B 6 19 19 HOH HOH . I 3 HOH B 7 22 22 HOH HOH . I 3 HOH B 8 25 25 HOH HOH . I 3 HOH B 9 29 29 HOH HOH . I 3 HOH B 10 30 30 HOH HOH . I 3 HOH B 11 31 31 HOH HOH . I 3 HOH B 12 33 33 HOH HOH . I 3 HOH B 13 35 35 HOH HOH . I 3 HOH B 14 36 36 HOH HOH . I 3 HOH B 15 37 37 HOH HOH . I 3 HOH B 16 38 38 HOH HOH . I 3 HOH B 17 40 40 HOH HOH . I 3 HOH B 18 44 44 HOH HOH . I 3 HOH B 19 48 48 HOH HOH . I 3 HOH B 20 51 51 HOH HOH . I 3 HOH B 21 52 52 HOH HOH . I 3 HOH B 22 55 55 HOH HOH . I 3 HOH B 23 56 56 HOH HOH . I 3 HOH B 24 65 65 HOH HOH . I 3 HOH B 25 66 66 HOH HOH . I 3 HOH B 26 68 68 HOH HOH . I 3 HOH B 27 69 69 HOH HOH . I 3 HOH B 28 72 72 HOH HOH . I 3 HOH B 29 77 77 HOH HOH . I 3 HOH B 30 78 78 HOH HOH . I 3 HOH B 31 79 79 HOH HOH . I 3 HOH B 32 82 82 HOH HOH . I 3 HOH B 33 90 90 HOH HOH . I 3 HOH B 34 93 93 HOH HOH . I 3 HOH B 35 94 94 HOH HOH . I 3 HOH B 36 95 95 HOH HOH . I 3 HOH B 37 96 96 HOH HOH . I 3 HOH B 38 100 100 HOH HOH . J 3 HOH C 1 8 8 HOH HOH . J 3 HOH C 2 18 18 HOH HOH . J 3 HOH C 3 23 23 HOH HOH . J 3 HOH C 4 24 24 HOH HOH . J 3 HOH C 5 27 27 HOH HOH . J 3 HOH C 6 28 28 HOH HOH . J 3 HOH C 7 32 32 HOH HOH . J 3 HOH C 8 39 39 HOH HOH . J 3 HOH C 9 41 41 HOH HOH . J 3 HOH C 10 42 42 HOH HOH . J 3 HOH C 11 46 46 HOH HOH . J 3 HOH C 12 58 58 HOH HOH . J 3 HOH C 13 59 59 HOH HOH . J 3 HOH C 14 60 60 HOH HOH . J 3 HOH C 15 61 61 HOH HOH . J 3 HOH C 16 63 63 HOH HOH . J 3 HOH C 17 64 64 HOH HOH . J 3 HOH C 18 67 67 HOH HOH . J 3 HOH C 19 70 70 HOH HOH . J 3 HOH C 20 74 74 HOH HOH . J 3 HOH C 21 75 75 HOH HOH . J 3 HOH C 22 83 83 HOH HOH . J 3 HOH C 23 84 84 HOH HOH . J 3 HOH C 24 87 87 HOH HOH . J 3 HOH C 25 97 97 HOH HOH . J 3 HOH C 26 98 98 HOH HOH . J 3 HOH C 27 101 101 HOH HOH . J 3 HOH C 28 102 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 ZN ZN ZN . A . D 2 -8.12 7.317 14.485 0.75 11.54 ? ZN ZN 1 A 1 HETATM 2 ZN ZN ZN . B . D 2 -8.733 7.06 15.201 0.25 14.29 ? ZN ZN 1 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #