data_2AM3
#
_model_server_result.job_id            wbsc2D6-5QVV1vSCNvGo7Q 
_model_server_result.datetime_utc      '2024-11-26 17:51:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2am3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":452}' 
#
_entry.id    2AM3 
#
_exptl.entry_id    2AM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2AM3 
_cell.length_a            40.628 
_cell.length_b            82.492 
_cell.length_c            102.25 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 115 1_555 A SG CYS 40 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 134 A CYS 239 1_555 A SG CYS 200 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc1 A OD2 ASP 108 A ASP 213 1_555 B MN MN . A MN 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc2 B MN MN . A MN 448 1_555 C O2A UPG . A UPG 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 B MN MN . A MN 448 1_555 C O2B UPG . A UPG 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc4 B MN MN . A MN 448 1_555 H O HOH . A HOH 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc5 B MN MN . A MN 448 1_555 H O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc6 B MN MN . A MN 448 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2AM3 
_atom_sites.fract_transf_matrix[1][1]    0.024614 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 448 448 MN MN . 
C 3 UPG A 1 449 449 UPG UPG . 
D 4 GOL A 1 450 450 GOL GOL . 
E 4 GOL A 1 451 451 GOL GOL . 
F 4 GOL A 1 452 452 GOL GOL . 
G 4 GOL A 1 453 453 GOL GOL . 
H 5 HOH A 1 454 1 HOH HOH . 
H 5 HOH A 2 455 2 HOH HOH . 
H 5 HOH A 3 456 3 HOH HOH . 
H 5 HOH A 4 457 4 HOH HOH . 
H 5 HOH A 5 458 5 HOH HOH . 
H 5 HOH A 6 459 6 HOH HOH . 
H 5 HOH A 7 460 7 HOH HOH . 
H 5 HOH A 8 461 8 HOH HOH . 
H 5 HOH A 9 462 9 HOH HOH . 
H 5 HOH A 10 463 10 HOH HOH . 
H 5 HOH A 11 464 11 HOH HOH . 
H 5 HOH A 12 465 12 HOH HOH . 
H 5 HOH A 13 466 13 HOH HOH . 
H 5 HOH A 14 467 14 HOH HOH . 
H 5 HOH A 15 468 15 HOH HOH . 
H 5 HOH A 16 469 16 HOH HOH . 
H 5 HOH A 17 470 17 HOH HOH . 
H 5 HOH A 18 471 18 HOH HOH . 
H 5 HOH A 19 472 19 HOH HOH . 
H 5 HOH A 20 473 20 HOH HOH . 
H 5 HOH A 21 474 21 HOH HOH . 
H 5 HOH A 22 475 22 HOH HOH . 
H 5 HOH A 23 476 23 HOH HOH . 
H 5 HOH A 24 477 24 HOH HOH . 
H 5 HOH A 25 478 25 HOH HOH . 
H 5 HOH A 26 479 26 HOH HOH . 
H 5 HOH A 27 480 27 HOH HOH . 
H 5 HOH A 28 481 28 HOH HOH . 
H 5 HOH A 29 482 29 HOH HOH . 
H 5 HOH A 30 483 30 HOH HOH . 
H 5 HOH A 31 484 31 HOH HOH . 
H 5 HOH A 32 485 32 HOH HOH . 
H 5 HOH A 33 486 33 HOH HOH . 
H 5 HOH A 34 487 34 HOH HOH . 
H 5 HOH A 35 488 35 HOH HOH . 
H 5 HOH A 36 489 36 HOH HOH . 
H 5 HOH A 37 490 37 HOH HOH . 
H 5 HOH A 38 491 38 HOH HOH . 
H 5 HOH A 39 492 39 HOH HOH . 
H 5 HOH A 40 493 40 HOH HOH . 
H 5 HOH A 41 494 41 HOH HOH . 
H 5 HOH A 42 495 42 HOH HOH . 
H 5 HOH A 43 496 43 HOH HOH . 
H 5 HOH A 44 497 44 HOH HOH . 
H 5 HOH A 45 498 45 HOH HOH . 
H 5 HOH A 46 499 46 HOH HOH . 
H 5 HOH A 47 500 47 HOH HOH . 
H 5 HOH A 48 501 48 HOH HOH . 
H 5 HOH A 49 502 49 HOH HOH . 
H 5 HOH A 50 503 50 HOH HOH . 
H 5 HOH A 51 504 51 HOH HOH . 
H 5 HOH A 52 505 52 HOH HOH . 
H 5 HOH A 53 506 53 HOH HOH . 
H 5 HOH A 54 507 54 HOH HOH . 
H 5 HOH A 55 508 55 HOH HOH . 
H 5 HOH A 56 509 56 HOH HOH . 
H 5 HOH A 57 510 57 HOH HOH . 
H 5 HOH A 58 511 58 HOH HOH . 
H 5 HOH A 59 512 59 HOH HOH . 
H 5 HOH A 60 513 60 HOH HOH . 
H 5 HOH A 61 514 61 HOH HOH . 
H 5 HOH A 62 515 62 HOH HOH . 
H 5 HOH A 63 516 63 HOH HOH . 
H 5 HOH A 64 517 64 HOH HOH . 
H 5 HOH A 65 518 65 HOH HOH . 
H 5 HOH A 66 519 66 HOH HOH . 
H 5 HOH A 67 520 67 HOH HOH . 
H 5 HOH A 68 521 68 HOH HOH . 
H 5 HOH A 69 522 69 HOH HOH . 
H 5 HOH A 70 523 70 HOH HOH . 
H 5 HOH A 71 524 71 HOH HOH . 
H 5 HOH A 72 525 72 HOH HOH . 
H 5 HOH A 73 526 73 HOH HOH . 
H 5 HOH A 74 527 74 HOH HOH . 
H 5 HOH A 75 528 75 HOH HOH . 
H 5 HOH A 76 529 76 HOH HOH . 
H 5 HOH A 77 530 77 HOH HOH . 
H 5 HOH A 78 531 78 HOH HOH . 
H 5 HOH A 79 532 79 HOH HOH . 
H 5 HOH A 80 533 80 HOH HOH . 
H 5 HOH A 81 534 81 HOH HOH . 
H 5 HOH A 82 535 82 HOH HOH . 
H 5 HOH A 83 536 83 HOH HOH . 
H 5 HOH A 84 537 84 HOH HOH . 
H 5 HOH A 85 538 85 HOH HOH . 
H 5 HOH A 86 539 86 HOH HOH . 
H 5 HOH A 87 540 87 HOH HOH . 
H 5 HOH A 88 541 88 HOH HOH . 
H 5 HOH A 89 542 89 HOH HOH . 
H 5 HOH A 90 543 90 HOH HOH . 
H 5 HOH A 91 544 91 HOH HOH . 
H 5 HOH A 92 545 92 HOH HOH . 
H 5 HOH A 93 546 93 HOH HOH . 
H 5 HOH A 94 547 94 HOH HOH . 
H 5 HOH A 95 548 95 HOH HOH . 
H 5 HOH A 96 549 96 HOH HOH . 
H 5 HOH A 97 550 97 HOH HOH . 
H 5 HOH A 98 551 98 HOH HOH . 
H 5 HOH A 99 552 99 HOH HOH . 
H 5 HOH A 100 553 100 HOH HOH . 
H 5 HOH A 101 554 101 HOH HOH . 
H 5 HOH A 102 555 102 HOH HOH . 
H 5 HOH A 103 556 103 HOH HOH . 
H 5 HOH A 104 557 104 HOH HOH . 
H 5 HOH A 105 558 105 HOH HOH . 
H 5 HOH A 106 559 106 HOH HOH . 
H 5 HOH A 107 560 107 HOH HOH . 
H 5 HOH A 108 561 108 HOH HOH . 
H 5 HOH A 109 562 109 HOH HOH . 
H 5 HOH A 110 563 110 HOH HOH . 
H 5 HOH A 111 564 111 HOH HOH . 
H 5 HOH A 112 565 112 HOH HOH . 
H 5 HOH A 113 566 113 HOH HOH . 
H 5 HOH A 114 567 114 HOH HOH . 
H 5 HOH A 115 568 115 HOH HOH . 
H 5 HOH A 116 569 116 HOH HOH . 
H 5 HOH A 117 570 117 HOH HOH . 
H 5 HOH A 118 571 118 HOH HOH . 
H 5 HOH A 119 572 119 HOH HOH . 
H 5 HOH A 120 573 120 HOH HOH . 
H 5 HOH A 121 574 121 HOH HOH . 
H 5 HOH A 122 575 122 HOH HOH . 
H 5 HOH A 123 576 123 HOH HOH . 
H 5 HOH A 124 577 124 HOH HOH . 
H 5 HOH A 125 578 125 HOH HOH . 
H 5 HOH A 126 579 126 HOH HOH . 
H 5 HOH A 127 580 127 HOH HOH . 
H 5 HOH A 128 581 128 HOH HOH . 
H 5 HOH A 129 582 129 HOH HOH . 
H 5 HOH A 130 583 130 HOH HOH . 
H 5 HOH A 131 584 131 HOH HOH . 
H 5 HOH A 132 585 132 HOH HOH . 
H 5 HOH A 133 586 133 HOH HOH . 
H 5 HOH A 134 587 134 HOH HOH . 
H 5 HOH A 135 588 135 HOH HOH . 
H 5 HOH A 136 589 136 HOH HOH . 
H 5 HOH A 137 590 137 HOH HOH . 
H 5 HOH A 138 591 138 HOH HOH . 
H 5 HOH A 139 592 139 HOH HOH . 
H 5 HOH A 140 593 140 HOH HOH . 
H 5 HOH A 141 594 141 HOH HOH . 
H 5 HOH A 142 595 142 HOH HOH . 
H 5 HOH A 143 596 143 HOH HOH . 
H 5 HOH A 144 597 144 HOH HOH . 
H 5 HOH A 145 598 145 HOH HOH . 
H 5 HOH A 146 599 146 HOH HOH . 
H 5 HOH A 147 600 147 HOH HOH . 
H 5 HOH A 148 601 148 HOH HOH . 
H 5 HOH A 149 602 149 HOH HOH . 
H 5 HOH A 150 603 150 HOH HOH . 
H 5 HOH A 151 604 151 HOH HOH . 
H 5 HOH A 152 605 152 HOH HOH . 
H 5 HOH A 153 606 153 HOH HOH . 
H 5 HOH A 154 607 154 HOH HOH . 
H 5 HOH A 155 608 155 HOH HOH . 
H 5 HOH A 156 609 156 HOH HOH . 
H 5 HOH A 157 610 157 HOH HOH . 
H 5 HOH A 158 611 158 HOH HOH . 
H 5 HOH A 159 612 159 HOH HOH . 
H 5 HOH A 160 613 160 HOH HOH . 
H 5 HOH A 161 614 161 HOH HOH . 
H 5 HOH A 162 615 162 HOH HOH . 
H 5 HOH A 163 616 163 HOH HOH . 
H 5 HOH A 164 617 164 HOH HOH . 
H 5 HOH A 165 618 165 HOH HOH . 
H 5 HOH A 166 619 166 HOH HOH . 
H 5 HOH A 167 620 167 HOH HOH . 
H 5 HOH A 168 621 168 HOH HOH . 
H 5 HOH A 169 622 169 HOH HOH . 
H 5 HOH A 170 623 170 HOH HOH . 
H 5 HOH A 171 624 171 HOH HOH . 
H 5 HOH A 172 625 172 HOH HOH . 
H 5 HOH A 173 626 173 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 1.787 23.523 37.87 1 26.14 ? C1 GOL 452 A 1 
HETATM 2 O O1 GOL . . . F 4 0.624 23.488 37.046 1 19.51 ? O1 GOL 452 A 1 
HETATM 3 C C2 GOL . . . F 4 1.822 22.299 38.77 1 29.35 ? C2 GOL 452 A 1 
HETATM 4 O O2 GOL . . . F 4 0.627 22.281 39.551 1 30.93 ? O2 GOL 452 A 1 
HETATM 5 C C3 GOL . . . F 4 1.94 20.982 38.028 1 27.41 ? C3 GOL 452 A 1 
HETATM 6 O O3 GOL . . . F 4 2.116 19.957 39.005 1 33.78 ? O3 GOL 452 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#