data_2AM5 # _model_server_result.job_id gde86AAa3vk1Awkn-8Yzdg _model_server_result.datetime_utc '2024-11-08 01:47:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2am5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":454}' # _entry.id 2AM5 # _exptl.entry_id 2AM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AM5 _cell.length_a 40.619 _cell.length_b 82.029 _cell.length_c 101.852 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 115 1_555 A SG CYS 40 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 134 A CYS 239 1_555 A SG CYS 200 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc1 A OD2 ASP 108 A ASP 213 1_555 B MN MN . A MN 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 B MN MN . A MN 448 1_555 C O1A UDP . A UDP 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 B MN MN . A MN 448 1_555 C O3B UDP . A UDP 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 B MN MN . A MN 448 1_555 I O HOH . A HOH 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 B MN MN . A MN 448 1_555 I O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 B MN MN . A MN 448 1_555 I O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2AM5 _atom_sites.fract_transf_matrix[1][1] 0.024619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 448 448 MN MN . C 3 UDP A 1 449 449 UDP UDP . D 4 GOL A 1 450 450 GOL GOL . E 4 GOL A 1 451 451 GOL GOL . F 4 GOL A 1 452 452 GOL GOL . G 4 GOL A 1 453 453 GOL GOL . H 4 GOL A 1 454 454 GOL GOL . I 5 HOH A 1 455 1 HOH HOH . I 5 HOH A 2 456 2 HOH HOH . I 5 HOH A 3 457 3 HOH HOH . I 5 HOH A 4 458 4 HOH HOH . I 5 HOH A 5 459 5 HOH HOH . I 5 HOH A 6 460 6 HOH HOH . I 5 HOH A 7 461 7 HOH HOH . I 5 HOH A 8 462 8 HOH HOH . I 5 HOH A 9 463 9 HOH HOH . I 5 HOH A 10 464 10 HOH HOH . I 5 HOH A 11 465 11 HOH HOH . I 5 HOH A 12 466 12 HOH HOH . I 5 HOH A 13 467 13 HOH HOH . I 5 HOH A 14 468 14 HOH HOH . I 5 HOH A 15 469 15 HOH HOH . I 5 HOH A 16 470 16 HOH HOH . I 5 HOH A 17 471 17 HOH HOH . I 5 HOH A 18 472 18 HOH HOH . I 5 HOH A 19 473 19 HOH HOH . I 5 HOH A 20 474 20 HOH HOH . I 5 HOH A 21 475 21 HOH HOH . I 5 HOH A 22 476 22 HOH HOH . I 5 HOH A 23 477 23 HOH HOH . I 5 HOH A 24 478 24 HOH HOH . I 5 HOH A 25 479 25 HOH HOH . I 5 HOH A 26 480 26 HOH HOH . I 5 HOH A 27 481 27 HOH HOH . I 5 HOH A 28 482 28 HOH HOH . I 5 HOH A 29 483 29 HOH HOH . I 5 HOH A 30 484 30 HOH HOH . I 5 HOH A 31 485 31 HOH HOH . I 5 HOH A 32 486 32 HOH HOH . I 5 HOH A 33 487 33 HOH HOH . I 5 HOH A 34 488 34 HOH HOH . I 5 HOH A 35 489 35 HOH HOH . I 5 HOH A 36 490 36 HOH HOH . I 5 HOH A 37 491 37 HOH HOH . I 5 HOH A 38 492 38 HOH HOH . I 5 HOH A 39 493 39 HOH HOH . I 5 HOH A 40 494 40 HOH HOH . I 5 HOH A 41 495 41 HOH HOH . I 5 HOH A 42 496 42 HOH HOH . I 5 HOH A 43 497 43 HOH HOH . I 5 HOH A 44 498 44 HOH HOH . I 5 HOH A 45 499 45 HOH HOH . I 5 HOH A 46 500 46 HOH HOH . I 5 HOH A 47 501 47 HOH HOH . I 5 HOH A 48 502 48 HOH HOH . I 5 HOH A 49 503 49 HOH HOH . I 5 HOH A 50 504 50 HOH HOH . I 5 HOH A 51 505 51 HOH HOH . I 5 HOH A 52 506 52 HOH HOH . I 5 HOH A 53 507 53 HOH HOH . I 5 HOH A 54 508 54 HOH HOH . I 5 HOH A 55 509 55 HOH HOH . I 5 HOH A 56 510 56 HOH HOH . I 5 HOH A 57 511 57 HOH HOH . I 5 HOH A 58 512 58 HOH HOH . I 5 HOH A 59 513 59 HOH HOH . I 5 HOH A 60 514 60 HOH HOH . I 5 HOH A 61 515 61 HOH HOH . I 5 HOH A 62 516 62 HOH HOH . I 5 HOH A 63 517 63 HOH HOH . I 5 HOH A 64 518 64 HOH HOH . I 5 HOH A 65 519 65 HOH HOH . I 5 HOH A 66 520 66 HOH HOH . I 5 HOH A 67 521 67 HOH HOH . I 5 HOH A 68 522 68 HOH HOH . I 5 HOH A 69 523 69 HOH HOH . I 5 HOH A 70 524 70 HOH HOH . I 5 HOH A 71 525 71 HOH HOH . I 5 HOH A 72 526 72 HOH HOH . I 5 HOH A 73 527 73 HOH HOH . I 5 HOH A 74 528 74 HOH HOH . I 5 HOH A 75 529 75 HOH HOH . I 5 HOH A 76 530 76 HOH HOH . I 5 HOH A 77 531 77 HOH HOH . I 5 HOH A 78 532 78 HOH HOH . I 5 HOH A 79 533 79 HOH HOH . I 5 HOH A 80 534 80 HOH HOH . I 5 HOH A 81 535 81 HOH HOH . I 5 HOH A 82 536 82 HOH HOH . I 5 HOH A 83 537 83 HOH HOH . I 5 HOH A 84 538 84 HOH HOH . I 5 HOH A 85 539 85 HOH HOH . I 5 HOH A 86 540 86 HOH HOH . I 5 HOH A 87 541 87 HOH HOH . I 5 HOH A 88 542 88 HOH HOH . I 5 HOH A 89 543 89 HOH HOH . I 5 HOH A 90 544 90 HOH HOH . I 5 HOH A 91 545 91 HOH HOH . I 5 HOH A 92 546 92 HOH HOH . I 5 HOH A 93 547 93 HOH HOH . I 5 HOH A 94 548 94 HOH HOH . I 5 HOH A 95 549 95 HOH HOH . I 5 HOH A 96 550 96 HOH HOH . I 5 HOH A 97 551 97 HOH HOH . I 5 HOH A 98 552 98 HOH HOH . I 5 HOH A 99 553 99 HOH HOH . I 5 HOH A 100 554 100 HOH HOH . I 5 HOH A 101 555 101 HOH HOH . I 5 HOH A 102 556 102 HOH HOH . I 5 HOH A 103 557 103 HOH HOH . I 5 HOH A 104 558 104 HOH HOH . I 5 HOH A 105 559 105 HOH HOH . I 5 HOH A 106 560 106 HOH HOH . I 5 HOH A 107 561 107 HOH HOH . I 5 HOH A 108 562 108 HOH HOH . I 5 HOH A 109 563 109 HOH HOH . I 5 HOH A 110 564 110 HOH HOH . I 5 HOH A 111 565 111 HOH HOH . I 5 HOH A 112 566 112 HOH HOH . I 5 HOH A 113 567 113 HOH HOH . I 5 HOH A 114 568 114 HOH HOH . I 5 HOH A 115 569 115 HOH HOH . I 5 HOH A 116 570 116 HOH HOH . I 5 HOH A 117 571 117 HOH HOH . I 5 HOH A 118 572 118 HOH HOH . I 5 HOH A 119 573 119 HOH HOH . I 5 HOH A 120 574 120 HOH HOH . I 5 HOH A 121 575 121 HOH HOH . I 5 HOH A 122 576 122 HOH HOH . I 5 HOH A 123 577 123 HOH HOH . I 5 HOH A 124 578 124 HOH HOH . I 5 HOH A 125 579 125 HOH HOH . I 5 HOH A 126 580 126 HOH HOH . I 5 HOH A 127 581 127 HOH HOH . I 5 HOH A 128 582 128 HOH HOH . I 5 HOH A 129 583 129 HOH HOH . I 5 HOH A 130 584 130 HOH HOH . I 5 HOH A 131 585 131 HOH HOH . I 5 HOH A 132 586 132 HOH HOH . I 5 HOH A 133 587 133 HOH HOH . I 5 HOH A 134 588 134 HOH HOH . I 5 HOH A 135 589 135 HOH HOH . I 5 HOH A 136 590 136 HOH HOH . I 5 HOH A 137 591 137 HOH HOH . I 5 HOH A 138 592 138 HOH HOH . I 5 HOH A 139 593 139 HOH HOH . I 5 HOH A 140 594 140 HOH HOH . I 5 HOH A 141 595 141 HOH HOH . I 5 HOH A 142 596 142 HOH HOH . I 5 HOH A 143 597 143 HOH HOH . I 5 HOH A 144 598 144 HOH HOH . I 5 HOH A 145 599 145 HOH HOH . I 5 HOH A 146 600 146 HOH HOH . I 5 HOH A 147 601 147 HOH HOH . I 5 HOH A 148 602 148 HOH HOH . I 5 HOH A 149 603 149 HOH HOH . I 5 HOH A 150 604 150 HOH HOH . I 5 HOH A 151 605 151 HOH HOH . I 5 HOH A 152 606 152 HOH HOH . I 5 HOH A 153 607 153 HOH HOH . I 5 HOH A 154 608 154 HOH HOH . I 5 HOH A 155 609 155 HOH HOH . I 5 HOH A 156 610 156 HOH HOH . I 5 HOH A 157 611 157 HOH HOH . I 5 HOH A 158 612 158 HOH HOH . I 5 HOH A 159 613 159 HOH HOH . I 5 HOH A 160 614 160 HOH HOH . I 5 HOH A 161 615 161 HOH HOH . I 5 HOH A 162 616 162 HOH HOH . I 5 HOH A 163 617 163 HOH HOH . I 5 HOH A 164 618 164 HOH HOH . I 5 HOH A 165 619 165 HOH HOH . I 5 HOH A 166 620 166 HOH HOH . I 5 HOH A 167 621 167 HOH HOH . I 5 HOH A 168 622 168 HOH HOH . I 5 HOH A 169 623 169 HOH HOH . I 5 HOH A 170 624 170 HOH HOH . I 5 HOH A 171 625 171 HOH HOH . I 5 HOH A 172 626 172 HOH HOH . I 5 HOH A 173 627 173 HOH HOH . I 5 HOH A 174 628 174 HOH HOH . I 5 HOH A 175 629 175 HOH HOH . I 5 HOH A 176 630 176 HOH HOH . I 5 HOH A 177 631 177 HOH HOH . I 5 HOH A 178 632 178 HOH HOH . I 5 HOH A 179 633 179 HOH HOH . I 5 HOH A 180 634 180 HOH HOH . I 5 HOH A 181 635 181 HOH HOH . I 5 HOH A 182 636 182 HOH HOH . I 5 HOH A 183 637 183 HOH HOH . I 5 HOH A 184 638 184 HOH HOH . I 5 HOH A 185 639 185 HOH HOH . I 5 HOH A 186 640 186 HOH HOH . I 5 HOH A 187 641 187 HOH HOH . I 5 HOH A 188 642 188 HOH HOH . I 5 HOH A 189 643 189 HOH HOH . I 5 HOH A 190 644 190 HOH HOH . I 5 HOH A 191 645 191 HOH HOH . I 5 HOH A 192 646 192 HOH HOH . I 5 HOH A 193 647 193 HOH HOH . I 5 HOH A 194 648 194 HOH HOH . I 5 HOH A 195 649 195 HOH HOH . I 5 HOH A 196 650 196 HOH HOH . I 5 HOH A 197 651 197 HOH HOH . I 5 HOH A 198 652 198 HOH HOH . I 5 HOH A 199 653 199 HOH HOH . I 5 HOH A 200 654 200 HOH HOH . I 5 HOH A 201 655 201 HOH HOH . I 5 HOH A 202 656 202 HOH HOH . I 5 HOH A 203 657 203 HOH HOH . I 5 HOH A 204 658 204 HOH HOH . I 5 HOH A 205 659 205 HOH HOH . I 5 HOH A 206 660 206 HOH HOH . I 5 HOH A 207 661 207 HOH HOH . I 5 HOH A 208 662 208 HOH HOH . I 5 HOH A 209 663 209 HOH HOH . I 5 HOH A 210 664 210 HOH HOH . I 5 HOH A 211 665 211 HOH HOH . I 5 HOH A 212 666 212 HOH HOH . I 5 HOH A 213 667 213 HOH HOH . I 5 HOH A 214 668 214 HOH HOH . I 5 HOH A 215 669 215 HOH HOH . I 5 HOH A 216 670 216 HOH HOH . I 5 HOH A 217 671 217 HOH HOH . I 5 HOH A 218 672 218 HOH HOH . I 5 HOH A 219 673 219 HOH HOH . I 5 HOH A 220 674 220 HOH HOH . I 5 HOH A 221 675 221 HOH HOH . I 5 HOH A 222 676 222 HOH HOH . I 5 HOH A 223 677 223 HOH HOH . I 5 HOH A 224 678 224 HOH HOH . I 5 HOH A 225 679 225 HOH HOH . I 5 HOH A 226 680 226 HOH HOH . I 5 HOH A 227 681 227 HOH HOH . I 5 HOH A 228 682 228 HOH HOH . I 5 HOH A 229 683 229 HOH HOH . I 5 HOH A 230 684 230 HOH HOH . I 5 HOH A 231 685 231 HOH HOH . I 5 HOH A 232 686 232 HOH HOH . I 5 HOH A 233 687 233 HOH HOH . I 5 HOH A 234 688 234 HOH HOH . I 5 HOH A 235 689 235 HOH HOH . I 5 HOH A 236 690 236 HOH HOH . I 5 HOH A 237 691 237 HOH HOH . I 5 HOH A 238 692 238 HOH HOH . I 5 HOH A 239 693 239 HOH HOH . I 5 HOH A 240 694 240 HOH HOH . I 5 HOH A 241 695 241 HOH HOH . I 5 HOH A 242 696 242 HOH HOH . I 5 HOH A 243 697 243 HOH HOH . I 5 HOH A 244 698 244 HOH HOH . I 5 HOH A 245 699 245 HOH HOH . I 5 HOH A 246 700 246 HOH HOH . I 5 HOH A 247 701 247 HOH HOH . I 5 HOH A 248 702 248 HOH HOH . I 5 HOH A 249 703 249 HOH HOH . I 5 HOH A 250 704 250 HOH HOH . I 5 HOH A 251 705 251 HOH HOH . I 5 HOH A 252 706 252 HOH HOH . I 5 HOH A 253 707 253 HOH HOH . I 5 HOH A 254 708 254 HOH HOH . I 5 HOH A 255 709 255 HOH HOH . I 5 HOH A 256 710 256 HOH HOH . I 5 HOH A 257 711 257 HOH HOH . I 5 HOH A 258 712 258 HOH HOH . I 5 HOH A 259 713 259 HOH HOH . I 5 HOH A 260 714 260 HOH HOH . I 5 HOH A 261 715 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 1.858 18.381 14.054 1 20.38 ? C1 GOL 454 A 1 HETATM 2 O O1 GOL . . . H 4 2.714 17.269 14.232 1 29.43 ? O1 GOL 454 A 1 HETATM 3 C C2 GOL . . . H 4 1.676 19.047 15.401 1 24.6 ? C2 GOL 454 A 1 HETATM 4 O O2 GOL . . . H 4 2.446 18.315 16.375 1 6.08 ? O2 GOL 454 A 1 HETATM 5 C C3 GOL . . . H 4 2.134 20.494 15.409 1 28.22 ? C3 GOL 454 A 1 HETATM 6 O O3 GOL . . . H 4 1.748 21.097 14.162 1 22.44 ? O3 GOL 454 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #