data_2AMB # _model_server_result.job_id 51b4z5YUPl9wbX5eAGoGHg _model_server_result.datetime_utc '2024-11-16 19:23:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2amb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2AMB # _exptl.entry_id 2AMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.446 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 17-HYDROXY-18A-HOMO-19-NOR-17ALPHA-PREGNA-4,9,11-TRIEN-3-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AMB _cell.length_a 54.31 _cell.length_b 66.04 _cell.length_c 71.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 33 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 686 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S1 _struct_conn.ptnr2_label_comp_id DTT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DTT _struct_conn.ptnr2_auth_seq_id 1003 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.942 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 O2' _chem_comp.formula_weight 312.446 _chem_comp.id 17H _chem_comp.mon_nstd_flag . _chem_comp.name 17-HYDROXY-18A-HOMO-19-NOR-17ALPHA-PREGNA-4,9,11-TRIEN-3-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 17H sing 1 n n C2 C3 17H sing 2 n n C2 H21 17H sing 3 n n C2 H22 17H sing 4 n n C4 C3 17H sing 5 n n C4 C5 17H doub 6 n n C4 H4 17H sing 7 n n C7 C6 17H sing 8 n n C7 C8 17H sing 9 n n C7 H71 17H sing 10 n n C7 H72 17H sing 11 n n C6 C5 17H sing 12 n n C6 H61 17H sing 13 n n C6 H62 17H sing 14 n n C9 C11 17H sing 15 n n C9 C8 17H sing 16 n n C9 C10 17H doub 17 n n C11 C12 17H doub 18 n n C11 H11 17H sing 19 n n C1 C10 17H sing 20 n n C1 H11A 17H sing 21 n n C1 H12A 17H sing 22 n n C3 O3 17H doub 23 n n C5 C10 17H sing 24 n n C8 C14 17H sing 25 n n C8 H8 17H sing 26 n n C12 C13 17H sing 27 n n C12 H12 17H sing 28 n n C13 C14 17H sing 29 n n C13 C17 17H sing 30 n n C13 C18 17H sing 31 n n C14 C15 17H sing 32 n n C14 H14 17H sing 33 n n C15 C16 17H sing 34 n n C15 H151 17H sing 35 n n C15 H152 17H sing 36 n n C16 C17 17H sing 37 n n C16 H161 17H sing 38 n n C16 H162 17H sing 39 n n C17 C20 17H sing 40 n n C17 O17 17H sing 41 n n C18 C22 17H sing 42 n n C18 H181 17H sing 43 n n C18 H182 17H sing 44 n n C22 H221 17H sing 45 n n C22 H222 17H sing 46 n n C22 H223 17H sing 47 n n C21 C20 17H sing 48 n n C21 H211 17H sing 49 n n C21 H212 17H sing 50 n n C21 H213 17H sing 51 n n C20 H201 17H sing 52 n n C20 H202 17H sing 53 n n O17 H17 17H sing 54 n n # _atom_sites.entry_id 2AMB _atom_sites.fract_transf_matrix[1][1] 0.018413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 1002 SO4 SO4 . C 3 17H A 1 1001 1001 17H 17H . D 4 DTT A 1 1003 1003 DTT DTT . E 5 EPE A 1 1004 1004 EPE EPE . F 6 GOL A 1 1005 1005 GOL GOL . G 7 HOH A 1 1 1 HOH HOH . G 7 HOH A 2 2 2 HOH HOH . G 7 HOH A 3 3 3 HOH HOH . G 7 HOH A 4 4 4 HOH HOH . G 7 HOH A 5 5 5 HOH HOH . G 7 HOH A 6 6 6 HOH HOH . G 7 HOH A 7 7 7 HOH HOH . G 7 HOH A 8 8 8 HOH HOH . G 7 HOH A 9 9 9 HOH HOH . G 7 HOH A 10 10 10 HOH HOH . G 7 HOH A 11 11 11 HOH HOH . G 7 HOH A 12 12 12 HOH HOH . G 7 HOH A 13 13 13 HOH HOH . G 7 HOH A 14 14 14 HOH HOH . G 7 HOH A 15 15 15 HOH HOH . G 7 HOH A 16 16 16 HOH HOH . G 7 HOH A 17 17 17 HOH HOH . G 7 HOH A 18 18 18 HOH HOH . G 7 HOH A 19 19 19 HOH HOH . G 7 HOH A 20 20 20 HOH HOH . G 7 HOH A 21 21 21 HOH HOH . G 7 HOH A 22 22 22 HOH HOH . G 7 HOH A 23 23 23 HOH HOH . G 7 HOH A 24 24 24 HOH HOH . G 7 HOH A 25 25 25 HOH HOH . G 7 HOH A 26 26 26 HOH HOH . G 7 HOH A 27 27 27 HOH HOH . G 7 HOH A 28 28 28 HOH HOH . G 7 HOH A 29 29 29 HOH HOH . G 7 HOH A 30 30 30 HOH HOH . G 7 HOH A 31 31 31 HOH HOH . G 7 HOH A 32 32 32 HOH HOH . G 7 HOH A 33 33 33 HOH HOH . G 7 HOH A 34 34 34 HOH HOH . G 7 HOH A 35 35 35 HOH HOH . G 7 HOH A 36 36 36 HOH HOH . G 7 HOH A 37 37 37 HOH HOH . G 7 HOH A 38 38 38 HOH HOH . G 7 HOH A 39 39 39 HOH HOH . G 7 HOH A 40 40 40 HOH HOH . G 7 HOH A 41 41 41 HOH HOH . G 7 HOH A 42 42 42 HOH HOH . G 7 HOH A 43 43 43 HOH HOH . G 7 HOH A 44 44 44 HOH HOH . G 7 HOH A 45 45 45 HOH HOH . G 7 HOH A 46 46 46 HOH HOH . G 7 HOH A 47 47 47 HOH HOH . G 7 HOH A 48 48 48 HOH HOH . G 7 HOH A 49 49 49 HOH HOH . G 7 HOH A 50 50 50 HOH HOH . G 7 HOH A 51 51 51 HOH HOH . G 7 HOH A 52 52 52 HOH HOH . G 7 HOH A 53 53 53 HOH HOH . G 7 HOH A 54 54 54 HOH HOH . G 7 HOH A 55 55 55 HOH HOH . G 7 HOH A 56 56 56 HOH HOH . G 7 HOH A 57 57 57 HOH HOH . G 7 HOH A 58 58 58 HOH HOH . G 7 HOH A 59 59 59 HOH HOH . G 7 HOH A 60 60 60 HOH HOH . G 7 HOH A 61 61 61 HOH HOH . G 7 HOH A 62 62 62 HOH HOH . G 7 HOH A 63 63 63 HOH HOH . G 7 HOH A 64 64 64 HOH HOH . G 7 HOH A 65 65 65 HOH HOH . G 7 HOH A 66 66 66 HOH HOH . G 7 HOH A 67 67 67 HOH HOH . G 7 HOH A 68 68 68 HOH HOH . G 7 HOH A 69 69 69 HOH HOH . G 7 HOH A 70 70 70 HOH HOH . G 7 HOH A 71 71 71 HOH HOH . G 7 HOH A 72 72 72 HOH HOH . G 7 HOH A 73 73 73 HOH HOH . G 7 HOH A 74 74 74 HOH HOH . G 7 HOH A 75 75 75 HOH HOH . G 7 HOH A 76 76 76 HOH HOH . G 7 HOH A 77 77 77 HOH HOH . G 7 HOH A 78 78 78 HOH HOH . G 7 HOH A 79 79 79 HOH HOH . G 7 HOH A 80 80 80 HOH HOH . G 7 HOH A 81 81 81 HOH HOH . G 7 HOH A 82 82 82 HOH HOH . G 7 HOH A 83 83 83 HOH HOH . G 7 HOH A 84 84 84 HOH HOH . G 7 HOH A 85 85 85 HOH HOH . G 7 HOH A 86 86 86 HOH HOH . G 7 HOH A 87 87 87 HOH HOH . G 7 HOH A 88 88 88 HOH HOH . G 7 HOH A 89 89 89 HOH HOH . G 7 HOH A 90 90 90 HOH HOH . G 7 HOH A 91 91 91 HOH HOH . G 7 HOH A 92 92 92 HOH HOH . G 7 HOH A 93 93 93 HOH HOH . G 7 HOH A 94 94 94 HOH HOH . G 7 HOH A 95 95 95 HOH HOH . G 7 HOH A 96 96 96 HOH HOH . G 7 HOH A 97 97 97 HOH HOH . G 7 HOH A 98 98 98 HOH HOH . G 7 HOH A 99 99 99 HOH HOH . G 7 HOH A 100 100 100 HOH HOH . G 7 HOH A 101 101 101 HOH HOH . G 7 HOH A 102 102 102 HOH HOH . G 7 HOH A 103 103 103 HOH HOH . G 7 HOH A 104 104 104 HOH HOH . G 7 HOH A 105 105 105 HOH HOH . G 7 HOH A 106 106 106 HOH HOH . G 7 HOH A 107 107 107 HOH HOH . G 7 HOH A 108 108 108 HOH HOH . G 7 HOH A 109 109 109 HOH HOH . G 7 HOH A 110 110 110 HOH HOH . G 7 HOH A 111 111 111 HOH HOH . G 7 HOH A 112 112 112 HOH HOH . G 7 HOH A 113 113 113 HOH HOH . G 7 HOH A 114 114 114 HOH HOH . G 7 HOH A 115 115 115 HOH HOH . G 7 HOH A 116 116 116 HOH HOH . G 7 HOH A 117 117 117 HOH HOH . G 7 HOH A 118 118 118 HOH HOH . G 7 HOH A 119 119 119 HOH HOH . G 7 HOH A 120 120 120 HOH HOH . G 7 HOH A 121 121 121 HOH HOH . G 7 HOH A 122 122 122 HOH HOH . G 7 HOH A 123 123 123 HOH HOH . G 7 HOH A 124 124 124 HOH HOH . G 7 HOH A 125 125 125 HOH HOH . G 7 HOH A 126 126 126 HOH HOH . G 7 HOH A 127 127 127 HOH HOH . G 7 HOH A 128 129 129 HOH HOH . G 7 HOH A 129 130 130 HOH HOH . G 7 HOH A 130 131 131 HOH HOH . G 7 HOH A 131 132 132 HOH HOH . G 7 HOH A 132 133 133 HOH HOH . G 7 HOH A 133 134 134 HOH HOH . G 7 HOH A 134 135 135 HOH HOH . G 7 HOH A 135 137 137 HOH HOH . G 7 HOH A 136 138 138 HOH HOH . G 7 HOH A 137 139 139 HOH HOH . G 7 HOH A 138 140 140 HOH HOH . G 7 HOH A 139 141 141 HOH HOH . G 7 HOH A 140 142 142 HOH HOH . G 7 HOH A 141 143 143 HOH HOH . G 7 HOH A 142 145 145 HOH HOH . G 7 HOH A 143 146 146 HOH HOH . G 7 HOH A 144 147 147 HOH HOH . G 7 HOH A 145 148 148 HOH HOH . G 7 HOH A 146 149 149 HOH HOH . G 7 HOH A 147 150 150 HOH HOH . G 7 HOH A 148 151 151 HOH HOH . G 7 HOH A 149 152 152 HOH HOH . G 7 HOH A 150 153 153 HOH HOH . G 7 HOH A 151 154 154 HOH HOH . G 7 HOH A 152 155 155 HOH HOH . G 7 HOH A 153 156 156 HOH HOH . G 7 HOH A 154 157 157 HOH HOH . G 7 HOH A 155 158 158 HOH HOH . G 7 HOH A 156 159 159 HOH HOH . G 7 HOH A 157 160 160 HOH HOH . G 7 HOH A 158 161 161 HOH HOH . G 7 HOH A 159 162 162 HOH HOH . G 7 HOH A 160 163 163 HOH HOH . G 7 HOH A 161 164 164 HOH HOH . G 7 HOH A 162 165 165 HOH HOH . G 7 HOH A 163 166 166 HOH HOH . G 7 HOH A 164 167 167 HOH HOH . G 7 HOH A 165 168 168 HOH HOH . G 7 HOH A 166 170 170 HOH HOH . G 7 HOH A 167 171 171 HOH HOH . G 7 HOH A 168 172 172 HOH HOH . G 7 HOH A 169 173 173 HOH HOH . G 7 HOH A 170 174 174 HOH HOH . G 7 HOH A 171 175 175 HOH HOH . G 7 HOH A 172 176 176 HOH HOH . G 7 HOH A 173 177 177 HOH HOH . G 7 HOH A 174 178 178 HOH HOH . G 7 HOH A 175 179 179 HOH HOH . G 7 HOH A 176 180 180 HOH HOH . G 7 HOH A 177 181 181 HOH HOH . G 7 HOH A 178 182 182 HOH HOH . G 7 HOH A 179 183 183 HOH HOH . G 7 HOH A 180 184 184 HOH HOH . G 7 HOH A 181 185 185 HOH HOH . G 7 HOH A 182 187 187 HOH HOH . G 7 HOH A 183 188 188 HOH HOH . G 7 HOH A 184 189 189 HOH HOH . G 7 HOH A 185 190 190 HOH HOH . G 7 HOH A 186 191 191 HOH HOH . G 7 HOH A 187 193 193 HOH HOH . G 7 HOH A 188 194 194 HOH HOH . G 7 HOH A 189 195 195 HOH HOH . G 7 HOH A 190 196 196 HOH HOH . G 7 HOH A 191 198 198 HOH HOH . G 7 HOH A 192 199 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 17H . . . C 3 26.186 6.566 4.23 1 22.46 ? C2 17H 1001 A 1 HETATM 2 C C4 17H . . . C 3 23.936 5.301 4.521 1 20.62 ? C4 17H 1001 A 1 HETATM 3 C C7 17H . . . C 3 24.895 1.588 4.335 1 19.46 ? C7 17H 1001 A 1 HETATM 4 C C6 17H . . . C 3 24.113 2.754 4.966 1 20.33 ? C6 17H 1001 A 1 HETATM 5 C C9 17H . . . C 3 27.03 2.939 4.553 1 21.13 ? C9 17H 1001 A 1 HETATM 6 C C11 17H . . . C 3 28.529 2.89 4.21 1 21.72 ? C11 17H 1001 A 1 HETATM 7 C C1 17H . . . C 3 26.978 5.4 4.08 1 21.49 ? C1 17H 1001 A 1 HETATM 8 C C3 17H . . . C 3 24.753 6.403 4.238 1 20.88 ? C3 17H 1001 A 1 HETATM 9 C C5 17H . . . C 3 24.728 4.134 4.664 1 19.66 ? C5 17H 1001 A 1 HETATM 10 C C8 17H . . . C 3 26.352 1.562 4.909 1 21.4 ? C8 17H 1001 A 1 HETATM 11 C C10 17H . . . C 3 26.264 4.121 4.48 1 20.94 ? C10 17H 1001 A 1 HETATM 12 C C12 17H . . . C 3 29.323 1.73 4.19 1 19.97 ? C12 17H 1001 A 1 HETATM 13 C C13 17H . . . C 3 28.719 0.412 4.579 1 21.89 ? C13 17H 1001 A 1 HETATM 14 C C14 17H . . . C 3 27.205 0.463 4.208 1 21.29 ? C14 17H 1001 A 1 HETATM 15 C C15 17H . . . C 3 26.672 -0.975 4.35 1 22.7 ? C15 17H 1001 A 1 HETATM 16 C C16 17H . . . C 3 27.928 -1.759 3.864 1 21.91 ? C16 17H 1001 A 1 HETATM 17 C C17 17H . . . C 3 29.175 -0.779 3.776 1 24.09 ? C17 17H 1001 A 1 HETATM 18 C C18 17H . . . C 3 28.782 0.299 6.217 1 21.7 ? C18 17H 1001 A 1 HETATM 19 C C22 17H . . . C 3 30.112 0.76 7.021 1 23.32 ? C22 17H 1001 A 1 HETATM 20 C C21 17H . . . C 3 30.2 -1.792 1.732 1 27.38 ? C21 17H 1001 A 1 HETATM 21 C C20 17H . . . C 3 29.356 -0.52 2.278 1 23.84 ? C20 17H 1001 A 1 HETATM 22 O O3 17H . . . C 3 24.053 7.596 3.948 1 30.04 ? O3 17H 1001 A 1 HETATM 23 O O17 17H . . . C 3 30.317 -1.324 4.491 1 21.13 ? O17 17H 1001 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 846 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 23 #