data_2AMC # _model_server_result.job_id UVT2927jSI-uyqN3iZp02g _model_server_result.datetime_utc '2024-12-25 07:11:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2amc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":999}' # _entry.id 2AMC # _exptl.entry_id 2AMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.189 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TYROSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AMC _cell.length_a 173.2 _cell.length_b 173.2 _cell.length_c 138.23 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 178 A GLU 262 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 C MG MG . A MG 901 1_555 B OE1 GLU 461 B GLU 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C9 H11 N O3' _chem_comp.formula_weight 181.189 _chem_comp.id TYR _chem_comp.mon_nstd_flag y _chem_comp.name TYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TYR sing 338 n n N H TYR sing 339 n n N H2 TYR sing 340 n n CA C TYR sing 341 n n CA CB TYR sing 342 n n CA HA TYR sing 343 n n C O TYR doub 344 n n C OXT TYR sing 345 n n CB CG TYR sing 346 n n CB HB2 TYR sing 347 n n CB HB3 TYR sing 348 n n CG CD1 TYR doub 349 n y CG CD2 TYR sing 350 n y CD1 CE1 TYR sing 351 n y CD1 HD1 TYR sing 352 n n CD2 CE2 TYR doub 353 n y CD2 HD2 TYR sing 354 n n CE1 CZ TYR doub 355 n y CE1 HE1 TYR sing 356 n n CE2 CZ TYR sing 357 n y CE2 HE2 TYR sing 358 n n CZ OH TYR sing 359 n n OH HH TYR sing 360 n n OXT HXT TYR sing 361 n n # _atom_sites.entry_id 2AMC _atom_sites.fract_transf_matrix[1][1] 0.005774 _atom_sites.fract_transf_matrix[1][2] 0.003333 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 901 901 MG MG . D 4 TYR A 1 888 888 TYR TYR . E 5 SO4 B 1 786 291 SO4 SO4 . F 4 TYR B 1 999 999 TYR TYR . G 6 HOH A 1 902 2 HOH HOH . G 6 HOH A 2 903 6 HOH HOH . G 6 HOH A 3 904 11 HOH HOH . G 6 HOH A 4 905 17 HOH HOH . G 6 HOH A 5 906 21 HOH HOH . G 6 HOH A 6 907 23 HOH HOH . G 6 HOH A 7 908 27 HOH HOH . G 6 HOH A 8 909 35 HOH HOH . G 6 HOH A 9 910 42 HOH HOH . G 6 HOH A 10 911 47 HOH HOH . G 6 HOH A 11 912 55 HOH HOH . G 6 HOH A 12 913 58 HOH HOH . G 6 HOH A 13 914 59 HOH HOH . G 6 HOH A 14 915 61 HOH HOH . G 6 HOH A 15 916 62 HOH HOH . G 6 HOH A 16 917 65 HOH HOH . G 6 HOH A 17 918 79 HOH HOH . G 6 HOH A 18 919 82 HOH HOH . G 6 HOH A 19 920 84 HOH HOH . G 6 HOH A 20 921 88 HOH HOH . G 6 HOH A 21 922 94 HOH HOH . G 6 HOH A 22 923 98 HOH HOH . G 6 HOH A 23 924 100 HOH HOH . G 6 HOH A 24 925 113 HOH HOH . G 6 HOH A 25 926 114 HOH HOH . G 6 HOH A 26 927 119 HOH HOH . G 6 HOH A 27 928 120 HOH HOH . G 6 HOH A 28 929 122 HOH HOH . G 6 HOH A 29 930 124 HOH HOH . G 6 HOH A 30 931 126 HOH HOH . G 6 HOH A 31 932 129 HOH HOH . G 6 HOH A 32 933 130 HOH HOH . G 6 HOH A 33 934 132 HOH HOH . G 6 HOH A 34 935 144 HOH HOH . G 6 HOH A 35 936 147 HOH HOH . G 6 HOH A 36 937 154 HOH HOH . G 6 HOH A 37 938 167 HOH HOH . G 6 HOH A 38 939 172 HOH HOH . G 6 HOH A 39 940 182 HOH HOH . G 6 HOH A 40 941 183 HOH HOH . G 6 HOH A 41 942 190 HOH HOH . G 6 HOH A 42 943 198 HOH HOH . G 6 HOH A 43 944 202 HOH HOH . G 6 HOH A 44 945 205 HOH HOH . G 6 HOH A 45 946 206 HOH HOH . G 6 HOH A 46 947 217 HOH HOH . H 6 HOH B 1 1000 1 HOH HOH . H 6 HOH B 2 1001 3 HOH HOH . H 6 HOH B 3 1002 4 HOH HOH . H 6 HOH B 4 1003 5 HOH HOH . H 6 HOH B 5 1004 7 HOH HOH . H 6 HOH B 6 1005 8 HOH HOH . H 6 HOH B 7 1006 9 HOH HOH . H 6 HOH B 8 1007 10 HOH HOH . H 6 HOH B 9 1008 12 HOH HOH . H 6 HOH B 10 1009 13 HOH HOH . H 6 HOH B 11 1010 14 HOH HOH . H 6 HOH B 12 1011 15 HOH HOH . H 6 HOH B 13 1012 16 HOH HOH . H 6 HOH B 14 1013 18 HOH HOH . H 6 HOH B 15 1014 19 HOH HOH . H 6 HOH B 16 1015 20 HOH HOH . H 6 HOH B 17 1016 22 HOH HOH . H 6 HOH B 18 1017 24 HOH HOH . H 6 HOH B 19 1018 26 HOH HOH . H 6 HOH B 20 1019 28 HOH HOH . H 6 HOH B 21 1020 29 HOH HOH . H 6 HOH B 22 1021 30 HOH HOH . H 6 HOH B 23 1022 31 HOH HOH . H 6 HOH B 24 1023 32 HOH HOH . H 6 HOH B 25 1024 33 HOH HOH . H 6 HOH B 26 1025 34 HOH HOH . H 6 HOH B 27 1026 36 HOH HOH . H 6 HOH B 28 1027 37 HOH HOH . H 6 HOH B 29 1028 38 HOH HOH . H 6 HOH B 30 1029 39 HOH HOH . H 6 HOH B 31 1030 40 HOH HOH . H 6 HOH B 32 1031 41 HOH HOH . H 6 HOH B 33 1032 43 HOH HOH . H 6 HOH B 34 1033 44 HOH HOH . H 6 HOH B 35 1034 45 HOH HOH . H 6 HOH B 36 1035 46 HOH HOH . H 6 HOH B 37 1036 48 HOH HOH . H 6 HOH B 38 1037 49 HOH HOH . H 6 HOH B 39 1038 50 HOH HOH . H 6 HOH B 40 1039 51 HOH HOH . H 6 HOH B 41 1040 52 HOH HOH . H 6 HOH B 42 1041 53 HOH HOH . H 6 HOH B 43 1042 54 HOH HOH . H 6 HOH B 44 1043 56 HOH HOH . H 6 HOH B 45 1044 57 HOH HOH . H 6 HOH B 46 1045 60 HOH HOH . H 6 HOH B 47 1046 63 HOH HOH . H 6 HOH B 48 1047 64 HOH HOH . H 6 HOH B 49 1048 66 HOH HOH . H 6 HOH B 50 1049 67 HOH HOH . H 6 HOH B 51 1050 68 HOH HOH . H 6 HOH B 52 1051 69 HOH HOH . H 6 HOH B 53 1052 70 HOH HOH . H 6 HOH B 54 1053 71 HOH HOH . H 6 HOH B 55 1054 72 HOH HOH . H 6 HOH B 56 1055 73 HOH HOH . H 6 HOH B 57 1056 74 HOH HOH . H 6 HOH B 58 1057 75 HOH HOH . H 6 HOH B 59 1058 76 HOH HOH . H 6 HOH B 60 1059 77 HOH HOH . H 6 HOH B 61 1060 78 HOH HOH . H 6 HOH B 62 1061 80 HOH HOH . H 6 HOH B 63 1062 81 HOH HOH . H 6 HOH B 64 1063 83 HOH HOH . H 6 HOH B 65 1064 85 HOH HOH . H 6 HOH B 66 1065 86 HOH HOH . H 6 HOH B 67 1066 87 HOH HOH . H 6 HOH B 68 1067 89 HOH HOH . H 6 HOH B 69 1068 90 HOH HOH . H 6 HOH B 70 1069 91 HOH HOH . H 6 HOH B 71 1070 92 HOH HOH . H 6 HOH B 72 1071 93 HOH HOH . H 6 HOH B 73 1072 95 HOH HOH . H 6 HOH B 74 1073 96 HOH HOH . H 6 HOH B 75 1074 97 HOH HOH . H 6 HOH B 76 1075 99 HOH HOH . H 6 HOH B 77 1076 101 HOH HOH . H 6 HOH B 78 1077 102 HOH HOH . H 6 HOH B 79 1078 103 HOH HOH . H 6 HOH B 80 1079 104 HOH HOH . H 6 HOH B 81 1080 105 HOH HOH . H 6 HOH B 82 1081 106 HOH HOH . H 6 HOH B 83 1082 107 HOH HOH . H 6 HOH B 84 1083 108 HOH HOH . H 6 HOH B 85 1084 109 HOH HOH . H 6 HOH B 86 1085 110 HOH HOH . H 6 HOH B 87 1086 111 HOH HOH . H 6 HOH B 88 1087 112 HOH HOH . H 6 HOH B 89 1088 115 HOH HOH . H 6 HOH B 90 1089 116 HOH HOH . H 6 HOH B 91 1090 117 HOH HOH . H 6 HOH B 92 1091 118 HOH HOH . H 6 HOH B 93 1092 121 HOH HOH . H 6 HOH B 94 1093 123 HOH HOH . H 6 HOH B 95 1094 125 HOH HOH . H 6 HOH B 96 1095 127 HOH HOH . H 6 HOH B 97 1096 128 HOH HOH . H 6 HOH B 98 1097 131 HOH HOH . H 6 HOH B 99 1098 133 HOH HOH . H 6 HOH B 100 1099 134 HOH HOH . H 6 HOH B 101 1100 135 HOH HOH . H 6 HOH B 102 1101 136 HOH HOH . H 6 HOH B 103 1102 137 HOH HOH . H 6 HOH B 104 1103 138 HOH HOH . H 6 HOH B 105 1104 139 HOH HOH . H 6 HOH B 106 1105 140 HOH HOH . H 6 HOH B 107 1106 141 HOH HOH . H 6 HOH B 108 1107 142 HOH HOH . H 6 HOH B 109 1108 143 HOH HOH . H 6 HOH B 110 1109 145 HOH HOH . H 6 HOH B 111 1110 146 HOH HOH . H 6 HOH B 112 1111 148 HOH HOH . H 6 HOH B 113 1112 149 HOH HOH . H 6 HOH B 114 1113 150 HOH HOH . H 6 HOH B 115 1114 151 HOH HOH . H 6 HOH B 116 1115 152 HOH HOH . H 6 HOH B 117 1116 153 HOH HOH . H 6 HOH B 118 1117 155 HOH HOH . H 6 HOH B 119 1118 156 HOH HOH . H 6 HOH B 120 1119 157 HOH HOH . H 6 HOH B 121 1120 158 HOH HOH . H 6 HOH B 122 1121 159 HOH HOH . H 6 HOH B 123 1122 160 HOH HOH . H 6 HOH B 124 1123 161 HOH HOH . H 6 HOH B 125 1124 162 HOH HOH . H 6 HOH B 126 1125 163 HOH HOH . H 6 HOH B 127 1126 164 HOH HOH . H 6 HOH B 128 1127 165 HOH HOH . H 6 HOH B 129 1128 166 HOH HOH . H 6 HOH B 130 1129 168 HOH HOH . H 6 HOH B 131 1130 169 HOH HOH . H 6 HOH B 132 1131 170 HOH HOH . H 6 HOH B 133 1132 171 HOH HOH . H 6 HOH B 134 1133 173 HOH HOH . H 6 HOH B 135 1134 174 HOH HOH . H 6 HOH B 136 1135 175 HOH HOH . H 6 HOH B 137 1136 176 HOH HOH . H 6 HOH B 138 1137 177 HOH HOH . H 6 HOH B 139 1138 178 HOH HOH . H 6 HOH B 140 1139 179 HOH HOH . H 6 HOH B 141 1140 180 HOH HOH . H 6 HOH B 142 1141 181 HOH HOH . H 6 HOH B 143 1142 184 HOH HOH . H 6 HOH B 144 1143 185 HOH HOH . H 6 HOH B 145 1144 186 HOH HOH . H 6 HOH B 146 1145 187 HOH HOH . H 6 HOH B 147 1146 188 HOH HOH . H 6 HOH B 148 1147 189 HOH HOH . H 6 HOH B 149 1148 191 HOH HOH . H 6 HOH B 150 1149 192 HOH HOH . H 6 HOH B 151 1150 193 HOH HOH . H 6 HOH B 152 1151 194 HOH HOH . H 6 HOH B 153 1152 195 HOH HOH . H 6 HOH B 154 1153 196 HOH HOH . H 6 HOH B 155 1154 197 HOH HOH . H 6 HOH B 156 1155 199 HOH HOH . H 6 HOH B 157 1156 200 HOH HOH . H 6 HOH B 158 1157 201 HOH HOH . H 6 HOH B 159 1158 203 HOH HOH . H 6 HOH B 160 1159 204 HOH HOH . H 6 HOH B 161 1160 207 HOH HOH . H 6 HOH B 162 1161 208 HOH HOH . H 6 HOH B 163 1162 209 HOH HOH . H 6 HOH B 164 1163 210 HOH HOH . H 6 HOH B 165 1164 211 HOH HOH . H 6 HOH B 166 1165 212 HOH HOH . H 6 HOH B 167 1166 213 HOH HOH . H 6 HOH B 168 1167 214 HOH HOH . H 6 HOH B 169 1168 215 HOH HOH . H 6 HOH B 170 1169 216 HOH HOH . H 6 HOH B 171 1170 218 HOH HOH . H 6 HOH B 172 1171 219 HOH HOH . H 6 HOH B 173 1172 220 HOH HOH . H 6 HOH B 174 1173 221 HOH HOH . H 6 HOH B 175 1174 222 HOH HOH . H 6 HOH B 176 1175 223 HOH HOH . H 6 HOH B 177 1176 224 HOH HOH . H 6 HOH B 178 1177 225 HOH HOH . H 6 HOH B 179 1178 226 HOH HOH . H 6 HOH B 180 1179 227 HOH HOH . H 6 HOH B 181 1180 228 HOH HOH . H 6 HOH B 182 1181 229 HOH HOH . H 6 HOH B 183 1182 230 HOH HOH . H 6 HOH B 184 1183 231 HOH HOH . H 6 HOH B 185 1184 232 HOH HOH . H 6 HOH B 186 1185 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TYR . . . F 4 0.441 83.081 39.734 1 7.62 ? N TYR 999 B 1 HETATM 2 C CA TYR . . . F 4 1.023 84.457 39.968 1 10.1 ? CA TYR 999 B 1 HETATM 3 C C TYR . . . F 4 -0.026 85.574 39.976 1 12.25 ? C TYR 999 B 1 HETATM 4 O O TYR . . . F 4 -1.24 85.246 39.826 1 46.61 ? O TYR 999 B 1 HETATM 5 C CB TYR . . . F 4 2.115 84.772 38.903 1 10.57 ? CB TYR 999 B 1 HETATM 6 C CG TYR . . . F 4 3.489 84.711 39.532 1 14.72 ? CG TYR 999 B 1 HETATM 7 C CD1 TYR . . . F 4 3.999 83.477 39.981 1 9.87 ? CD1 TYR 999 B 1 HETATM 8 C CD2 TYR . . . F 4 4.229 85.872 39.808 1 11.96 ? CD2 TYR 999 B 1 HETATM 9 C CE1 TYR . . . F 4 5.2 83.402 40.704 1 13.07 ? CE1 TYR 999 B 1 HETATM 10 C CE2 TYR . . . F 4 5.446 85.798 40.531 1 13.51 ? CE2 TYR 999 B 1 HETATM 11 C CZ TYR . . . F 4 5.905 84.555 40.977 1 15.84 ? CZ TYR 999 B 1 HETATM 12 O OH TYR . . . F 4 7.045 84.454 41.745 1 18.16 ? OH TYR 999 B 1 HETATM 13 O OXT TYR . . . F 4 0.396 86.748 40.135 1 53.75 ? OXT TYR 999 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 492 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #