data_2AMP # _model_server_result.job_id QHIteBtQ0pgdLICOTIztfg _model_server_result.datetime_utc '2024-11-16 10:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2amp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2AMP # _exptl.entry_id 2AMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.722 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VALYL-N~1~-((1S)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AMP _cell.length_a 66.589 _cell.length_b 90.239 _cell.length_c 110.345 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 144 1_555 C C21 I12 . A I12 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 B SG CYS 146 B CYS 144 1_555 D C21 I12 . B I12 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C30 H46 N6 O8' _chem_comp.formula_weight 618.722 _chem_comp.id I12 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VALYL-N~1~-((1S)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(E)-(S)-4-[(S)-4-METHYL-2-((S)-3-METHYL-2{(S)-2-[(5-METHYL-ISOXAZOLE-3- CARBONYL)-AMINO]-PROPIONYLAMINO}-BUTYRYLAMINO)-PENTANOYLAMINO]-5-((S)-2- OXO-PYRROLIDIN-3-YL)-PENT-2-ENOIC ACID ETHYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 I12 doub 152 n y N1 O1 I12 sing 153 n y C1 C2 I12 sing 154 n y C1 C5 I12 sing 155 n n C2 C3 I12 doub 156 n y C2 H2 I12 sing 157 n n C3 C4 I12 sing 158 n n C3 O1 I12 sing 159 n y C4 H41 I12 sing 160 n n C4 H42 I12 sing 161 n n C4 H43 I12 sing 162 n n C5 O2 I12 doub 163 n n C5 N2 I12 sing 164 n n N2 C6 I12 sing 165 n n N2 HN2 I12 sing 166 n n C6 C7 I12 sing 167 n n C6 C8 I12 sing 168 n n C6 H6 I12 sing 169 n n C7 O3 I12 doub 170 n n C7 N3 I12 sing 171 n n C8 H81 I12 sing 172 n n C8 H82 I12 sing 173 n n C8 H83 I12 sing 174 n n N3 C9 I12 sing 175 n n N3 HN3 I12 sing 176 n n C9 C10 I12 sing 177 n n C9 C13 I12 sing 178 n n C9 H9 I12 sing 179 n n C10 C11 I12 sing 180 n n C10 C12 I12 sing 181 n n C10 H10 I12 sing 182 n n C11 H111 I12 sing 183 n n C11 H112 I12 sing 184 n n C11 H113 I12 sing 185 n n C12 H121 I12 sing 186 n n C12 H122 I12 sing 187 n n C12 H123 I12 sing 188 n n C13 O4 I12 doub 189 n n C13 N4 I12 sing 190 n n N4 C14 I12 sing 191 n n N4 HN4 I12 sing 192 n n C14 C15 I12 sing 193 n n C14 C19 I12 sing 194 n n C14 H14 I12 sing 195 n n C15 C16 I12 sing 196 n n C15 H151 I12 sing 197 n n C15 H152 I12 sing 198 n n C16 C17 I12 sing 199 n n C16 C18 I12 sing 200 n n C16 H16 I12 sing 201 n n C17 H171 I12 sing 202 n n C17 H172 I12 sing 203 n n C17 H173 I12 sing 204 n n C18 H181 I12 sing 205 n n C18 H182 I12 sing 206 n n C18 H183 I12 sing 207 n n C19 O5 I12 doub 208 n n C19 N5 I12 sing 209 n n N5 C20 I12 sing 210 n n N5 HN5 I12 sing 211 n n C20 C21 I12 sing 212 n n C20 C26 I12 sing 213 n n C20 H20 I12 sing 214 n n C21 C22 I12 doub 215 e n C21 H21 I12 sing 216 n n C22 C23 I12 sing 217 n n C22 H22 I12 sing 218 n n C23 O6 I12 doub 219 n n C23 O7 I12 sing 220 n n O7 C24 I12 sing 221 n n C24 C25 I12 sing 222 n n C24 H241 I12 sing 223 n n C24 H242 I12 sing 224 n n C25 H251 I12 sing 225 n n C25 H252 I12 sing 226 n n C25 H253 I12 sing 227 n n C26 C27 I12 sing 228 n n C26 H261 I12 sing 229 n n C26 H262 I12 sing 230 n n C27 C28 I12 sing 231 n n C27 C30 I12 sing 232 n n C27 H27 I12 sing 233 n n C28 C29 I12 sing 234 n n C28 H281 I12 sing 235 n n C28 H282 I12 sing 236 n n C29 N6 I12 sing 237 n n C29 H291 I12 sing 238 n n C29 H292 I12 sing 239 n n N6 C30 I12 sing 240 n n N6 HN6 I12 sing 241 n n C30 O8 I12 doub 242 n n # _atom_sites.entry_id 2AMP _atom_sites.fract_transf_matrix[1][1] 0.015017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I12 A 1 1001 1001 I12 I12 . D 2 I12 B 1 2001 2001 I12 I12 . E 3 HOH A 1 1002 1 HOH TIP . E 3 HOH A 2 1003 2 HOH TIP . E 3 HOH A 3 1004 4 HOH TIP . E 3 HOH A 4 1005 6 HOH TIP . E 3 HOH A 5 1006 9 HOH TIP . E 3 HOH A 6 1007 12 HOH TIP . E 3 HOH A 7 1008 15 HOH TIP . E 3 HOH A 8 1009 16 HOH TIP . E 3 HOH A 9 1010 17 HOH TIP . E 3 HOH A 10 1011 18 HOH TIP . E 3 HOH A 11 1012 19 HOH TIP . E 3 HOH A 12 1013 21 HOH TIP . E 3 HOH A 13 1014 22 HOH TIP . E 3 HOH A 14 1015 24 HOH TIP . E 3 HOH A 15 1016 26 HOH TIP . E 3 HOH A 16 1017 27 HOH TIP . E 3 HOH A 17 1018 28 HOH TIP . E 3 HOH A 18 1019 32 HOH TIP . E 3 HOH A 19 1020 33 HOH TIP . E 3 HOH A 20 1021 34 HOH TIP . E 3 HOH A 21 1022 35 HOH TIP . E 3 HOH A 22 1023 36 HOH TIP . E 3 HOH A 23 1024 37 HOH TIP . E 3 HOH A 24 1025 39 HOH TIP . E 3 HOH A 25 1026 42 HOH TIP . E 3 HOH A 26 1027 44 HOH TIP . E 3 HOH A 27 1028 45 HOH TIP . E 3 HOH A 28 1029 47 HOH TIP . E 3 HOH A 29 1030 48 HOH TIP . E 3 HOH A 30 1031 49 HOH TIP . E 3 HOH A 31 1032 52 HOH TIP . E 3 HOH A 32 1033 54 HOH TIP . E 3 HOH A 33 1034 55 HOH TIP . E 3 HOH A 34 1035 57 HOH TIP . E 3 HOH A 35 1036 58 HOH TIP . E 3 HOH A 36 1037 62 HOH TIP . E 3 HOH A 37 1038 64 HOH TIP . E 3 HOH A 38 1039 65 HOH TIP . E 3 HOH A 39 1040 67 HOH TIP . E 3 HOH A 40 1041 73 HOH TIP . E 3 HOH A 41 1042 75 HOH TIP . E 3 HOH A 42 1043 76 HOH TIP . E 3 HOH A 43 1044 78 HOH TIP . E 3 HOH A 44 1045 79 HOH TIP . E 3 HOH A 45 1046 80 HOH TIP . E 3 HOH A 46 1047 81 HOH TIP . E 3 HOH A 47 1048 82 HOH TIP . E 3 HOH A 48 1049 84 HOH TIP . E 3 HOH A 49 1050 85 HOH TIP . E 3 HOH A 50 1051 86 HOH TIP . E 3 HOH A 51 1052 87 HOH TIP . E 3 HOH A 52 1053 89 HOH TIP . E 3 HOH A 53 1054 90 HOH TIP . F 3 HOH B 1 2002 3 HOH TIP . F 3 HOH B 2 2003 5 HOH TIP . F 3 HOH B 3 2004 7 HOH TIP . F 3 HOH B 4 2005 8 HOH TIP . F 3 HOH B 5 2006 10 HOH TIP . F 3 HOH B 6 2007 11 HOH TIP . F 3 HOH B 7 2008 13 HOH TIP . F 3 HOH B 8 2009 23 HOH TIP . F 3 HOH B 9 2010 25 HOH TIP . F 3 HOH B 10 2011 29 HOH TIP . F 3 HOH B 11 2012 30 HOH TIP . F 3 HOH B 12 2013 31 HOH TIP . F 3 HOH B 13 2014 38 HOH TIP . F 3 HOH B 14 2015 40 HOH TIP . F 3 HOH B 15 2016 41 HOH TIP . F 3 HOH B 16 2017 43 HOH TIP . F 3 HOH B 17 2018 46 HOH TIP . F 3 HOH B 18 2019 50 HOH TIP . F 3 HOH B 19 2020 51 HOH TIP . F 3 HOH B 20 2021 53 HOH TIP . F 3 HOH B 21 2022 56 HOH TIP . F 3 HOH B 22 2023 59 HOH TIP . F 3 HOH B 23 2024 60 HOH TIP . F 3 HOH B 24 2025 61 HOH TIP . F 3 HOH B 25 2026 63 HOH TIP . F 3 HOH B 26 2027 66 HOH TIP . F 3 HOH B 27 2028 68 HOH TIP . F 3 HOH B 28 2029 69 HOH TIP . F 3 HOH B 29 2030 70 HOH TIP . F 3 HOH B 30 2031 71 HOH TIP . F 3 HOH B 31 2032 72 HOH TIP . F 3 HOH B 32 2033 74 HOH TIP . F 3 HOH B 33 2034 77 HOH TIP . F 3 HOH B 34 2035 83 HOH TIP . F 3 HOH B 35 2036 88 HOH TIP . F 3 HOH B 36 2037 91 HOH TIP . F 3 HOH B 37 2038 92 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 I12 . . . C 2 -2.271 17.467 -17.144 1 64.15 ? N1 I12 1001 A 1 HETATM 2 C C1 I12 . . . C 2 -1.163 17.094 -17.818 1 62.29 ? C1 I12 1001 A 1 HETATM 3 C C2 I12 . . . C 2 -0.086 17.701 -17.084 1 63.53 ? C2 I12 1001 A 1 HETATM 4 C C3 I12 . . . C 2 -0.58 18.398 -15.983 1 64.13 ? C3 I12 1001 A 1 HETATM 5 C C4 I12 . . . C 2 0.213 19.119 -15.026 1 63.18 ? C4 I12 1001 A 1 HETATM 6 O O1 I12 . . . C 2 -1.972 18.327 -15.902 1 64.8 ? O1 I12 1001 A 1 HETATM 7 C C5 I12 . . . C 2 -1.716 16.228 -19.073 1 60.15 ? C5 I12 1001 A 1 HETATM 8 O O2 I12 . . . C 2 -1.269 15.531 -20.117 1 59.61 ? O2 I12 1001 A 1 HETATM 9 N N2 I12 . . . C 2 -3.252 16.364 -18.815 1 56.52 ? N2 I12 1001 A 1 HETATM 10 C C6 I12 . . . C 2 -4.484 15.913 -18.782 1 53.94 ? C6 I12 1001 A 1 HETATM 11 C C7 I12 . . . C 2 -5.149 16.534 -17.526 1 52.78 ? C7 I12 1001 A 1 HETATM 12 O O3 I12 . . . C 2 -4.885 16.093 -16.454 1 54.2 ? O3 I12 1001 A 1 HETATM 13 C C8 I12 . . . C 2 -4.536 14.457 -18.589 1 52.19 ? C8 I12 1001 A 1 HETATM 14 N N3 I12 . . . C 2 -6.451 16.65 -17.378 1 51.48 ? N3 I12 1001 A 1 HETATM 15 C C9 I12 . . . C 2 -6.825 17.925 -16.704 1 47.35 ? C9 I12 1001 A 1 HETATM 16 C C10 I12 . . . C 2 -6.875 19.184 -17.706 1 48.61 ? C10 I12 1001 A 1 HETATM 17 C C11 I12 . . . C 2 -7.287 20.533 -17 1 47.04 ? C11 I12 1001 A 1 HETATM 18 C C12 I12 . . . C 2 -5.514 19.406 -18.369 1 47.11 ? C12 I12 1001 A 1 HETATM 19 C C13 I12 . . . C 2 -8.144 17.64 -16.027 1 47.6 ? C13 I12 1001 A 1 HETATM 20 O O4 I12 . . . C 2 -9.118 17.222 -16.77 1 46.47 ? O4 I12 1001 A 1 HETATM 21 N N4 I12 . . . C 2 -8.162 17.84 -14.808 1 47.01 ? N4 I12 1001 A 1 HETATM 22 C C14 I12 . . . C 2 -9.473 17.592 -13.945 1 45.6 ? C14 I12 1001 A 1 HETATM 23 C C15 I12 . . . C 2 -9.205 17.462 -12.435 1 43.98 ? C15 I12 1001 A 1 HETATM 24 C C16 I12 . . . C 2 -8.259 16.328 -11.946 1 43.59 ? C16 I12 1001 A 1 HETATM 25 C C17 I12 . . . C 2 -8.763 14.94 -12.331 1 44.41 ? C17 I12 1001 A 1 HETATM 26 C C18 I12 . . . C 2 -8.134 16.405 -10.419 1 43.48 ? C18 I12 1001 A 1 HETATM 27 C C19 I12 . . . C 2 -10.504 18.931 -14.234 1 41.73 ? C19 I12 1001 A 1 HETATM 28 O O5 I12 . . . C 2 -10.112 20.178 -14.228 1 42.81 ? O5 I12 1001 A 1 HETATM 29 N N5 I12 . . . C 2 -11.562 18.738 -14.849 1 42.95 ? N5 I12 1001 A 1 HETATM 30 C C20 I12 . . . C 2 -12.98 18.701 -15.136 1 43.85 ? C20 I12 1001 A 1 HETATM 31 C C21 I12 . . . C 2 -14.187 19.415 -14.511 1 46.84 ? C21 I12 1001 A 1 HETATM 32 C C22 I12 . . . C 2 -13.757 20.394 -13.441 1 51.13 ? C22 I12 1001 A 1 HETATM 33 C C23 I12 . . . C 2 -13.524 21.829 -13.039 1 54.44 ? C23 I12 1001 A 1 HETATM 34 O O6 I12 . . . C 2 -14.51 22.426 -12.524 1 55.44 ? O6 I12 1001 A 1 HETATM 35 O O7 I12 . . . C 2 -12.27 22.296 -13.049 1 54.74 ? O7 I12 1001 A 1 HETATM 36 C C24 I12 . . . C 2 -12.078 23.387 -12.264 1 55.01 ? C24 I12 1001 A 1 HETATM 37 C C25 I12 . . . C 2 -10.61 23.517 -12.515 1 55.34 ? C25 I12 1001 A 1 HETATM 38 C C26 I12 . . . C 2 -13.081 19.345 -16.504 1 29.27 ? C26 I12 1001 A 1 HETATM 39 C C27 I12 . . . C 2 -12.402 19.382 -17.795 1 27.72 ? C27 I12 1001 A 1 HETATM 40 C C28 I12 . . . C 2 -12.009 20.755 -18.223 1 28.37 ? C28 I12 1001 A 1 HETATM 41 C C29 I12 . . . C 2 -11.881 20.592 -19.723 1 30.37 ? C29 I12 1001 A 1 HETATM 42 N N6 I12 . . . C 2 -12.904 19.598 -19.981 1 28.05 ? N6 I12 1001 A 1 HETATM 43 C C30 I12 . . . C 2 -13.222 18.905 -18.92 1 26.57 ? C30 I12 1001 A 1 HETATM 44 O O8 I12 . . . C 2 -13.96 18.02 -18.937 1 39.52 ? O8 I12 1001 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #