data_2AMP # _model_server_result.job_id AhEXrac4vjiZ00rmBLLeRA _model_server_result.datetime_utc '2024-11-16 11:05:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2amp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 2AMP # _exptl.entry_id 2AMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.722 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VALYL-N~1~-((1S)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AMP _cell.length_a 66.589 _cell.length_b 90.239 _cell.length_c 110.345 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 144 1_555 C C21 I12 . A I12 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 B SG CYS 146 B CYS 144 1_555 D C21 I12 . B I12 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C30 H46 N6 O8' _chem_comp.formula_weight 618.722 _chem_comp.id I12 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VALYL-N~1~-((1S)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(E)-(S)-4-[(S)-4-METHYL-2-((S)-3-METHYL-2{(S)-2-[(5-METHYL-ISOXAZOLE-3- CARBONYL)-AMINO]-PROPIONYLAMINO}-BUTYRYLAMINO)-PENTANOYLAMINO]-5-((S)-2- OXO-PYRROLIDIN-3-YL)-PENT-2-ENOIC ACID ETHYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 I12 doub 152 n y N1 O1 I12 sing 153 n y C1 C2 I12 sing 154 n y C1 C5 I12 sing 155 n n C2 C3 I12 doub 156 n y C2 H2 I12 sing 157 n n C3 C4 I12 sing 158 n n C3 O1 I12 sing 159 n y C4 H41 I12 sing 160 n n C4 H42 I12 sing 161 n n C4 H43 I12 sing 162 n n C5 O2 I12 doub 163 n n C5 N2 I12 sing 164 n n N2 C6 I12 sing 165 n n N2 HN2 I12 sing 166 n n C6 C7 I12 sing 167 n n C6 C8 I12 sing 168 n n C6 H6 I12 sing 169 n n C7 O3 I12 doub 170 n n C7 N3 I12 sing 171 n n C8 H81 I12 sing 172 n n C8 H82 I12 sing 173 n n C8 H83 I12 sing 174 n n N3 C9 I12 sing 175 n n N3 HN3 I12 sing 176 n n C9 C10 I12 sing 177 n n C9 C13 I12 sing 178 n n C9 H9 I12 sing 179 n n C10 C11 I12 sing 180 n n C10 C12 I12 sing 181 n n C10 H10 I12 sing 182 n n C11 H111 I12 sing 183 n n C11 H112 I12 sing 184 n n C11 H113 I12 sing 185 n n C12 H121 I12 sing 186 n n C12 H122 I12 sing 187 n n C12 H123 I12 sing 188 n n C13 O4 I12 doub 189 n n C13 N4 I12 sing 190 n n N4 C14 I12 sing 191 n n N4 HN4 I12 sing 192 n n C14 C15 I12 sing 193 n n C14 C19 I12 sing 194 n n C14 H14 I12 sing 195 n n C15 C16 I12 sing 196 n n C15 H151 I12 sing 197 n n C15 H152 I12 sing 198 n n C16 C17 I12 sing 199 n n C16 C18 I12 sing 200 n n C16 H16 I12 sing 201 n n C17 H171 I12 sing 202 n n C17 H172 I12 sing 203 n n C17 H173 I12 sing 204 n n C18 H181 I12 sing 205 n n C18 H182 I12 sing 206 n n C18 H183 I12 sing 207 n n C19 O5 I12 doub 208 n n C19 N5 I12 sing 209 n n N5 C20 I12 sing 210 n n N5 HN5 I12 sing 211 n n C20 C21 I12 sing 212 n n C20 C26 I12 sing 213 n n C20 H20 I12 sing 214 n n C21 C22 I12 doub 215 e n C21 H21 I12 sing 216 n n C22 C23 I12 sing 217 n n C22 H22 I12 sing 218 n n C23 O6 I12 doub 219 n n C23 O7 I12 sing 220 n n O7 C24 I12 sing 221 n n C24 C25 I12 sing 222 n n C24 H241 I12 sing 223 n n C24 H242 I12 sing 224 n n C25 H251 I12 sing 225 n n C25 H252 I12 sing 226 n n C25 H253 I12 sing 227 n n C26 C27 I12 sing 228 n n C26 H261 I12 sing 229 n n C26 H262 I12 sing 230 n n C27 C28 I12 sing 231 n n C27 C30 I12 sing 232 n n C27 H27 I12 sing 233 n n C28 C29 I12 sing 234 n n C28 H281 I12 sing 235 n n C28 H282 I12 sing 236 n n C29 N6 I12 sing 237 n n C29 H291 I12 sing 238 n n C29 H292 I12 sing 239 n n N6 C30 I12 sing 240 n n N6 HN6 I12 sing 241 n n C30 O8 I12 doub 242 n n # _atom_sites.entry_id 2AMP _atom_sites.fract_transf_matrix[1][1] 0.015017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I12 A 1 1001 1001 I12 I12 . D 2 I12 B 1 2001 2001 I12 I12 . E 3 HOH A 1 1002 1 HOH TIP . E 3 HOH A 2 1003 2 HOH TIP . E 3 HOH A 3 1004 4 HOH TIP . E 3 HOH A 4 1005 6 HOH TIP . E 3 HOH A 5 1006 9 HOH TIP . E 3 HOH A 6 1007 12 HOH TIP . E 3 HOH A 7 1008 15 HOH TIP . E 3 HOH A 8 1009 16 HOH TIP . E 3 HOH A 9 1010 17 HOH TIP . E 3 HOH A 10 1011 18 HOH TIP . E 3 HOH A 11 1012 19 HOH TIP . E 3 HOH A 12 1013 21 HOH TIP . E 3 HOH A 13 1014 22 HOH TIP . E 3 HOH A 14 1015 24 HOH TIP . E 3 HOH A 15 1016 26 HOH TIP . E 3 HOH A 16 1017 27 HOH TIP . E 3 HOH A 17 1018 28 HOH TIP . E 3 HOH A 18 1019 32 HOH TIP . E 3 HOH A 19 1020 33 HOH TIP . E 3 HOH A 20 1021 34 HOH TIP . E 3 HOH A 21 1022 35 HOH TIP . E 3 HOH A 22 1023 36 HOH TIP . E 3 HOH A 23 1024 37 HOH TIP . E 3 HOH A 24 1025 39 HOH TIP . E 3 HOH A 25 1026 42 HOH TIP . E 3 HOH A 26 1027 44 HOH TIP . E 3 HOH A 27 1028 45 HOH TIP . E 3 HOH A 28 1029 47 HOH TIP . E 3 HOH A 29 1030 48 HOH TIP . E 3 HOH A 30 1031 49 HOH TIP . E 3 HOH A 31 1032 52 HOH TIP . E 3 HOH A 32 1033 54 HOH TIP . E 3 HOH A 33 1034 55 HOH TIP . E 3 HOH A 34 1035 57 HOH TIP . E 3 HOH A 35 1036 58 HOH TIP . E 3 HOH A 36 1037 62 HOH TIP . E 3 HOH A 37 1038 64 HOH TIP . E 3 HOH A 38 1039 65 HOH TIP . E 3 HOH A 39 1040 67 HOH TIP . E 3 HOH A 40 1041 73 HOH TIP . E 3 HOH A 41 1042 75 HOH TIP . E 3 HOH A 42 1043 76 HOH TIP . E 3 HOH A 43 1044 78 HOH TIP . E 3 HOH A 44 1045 79 HOH TIP . E 3 HOH A 45 1046 80 HOH TIP . E 3 HOH A 46 1047 81 HOH TIP . E 3 HOH A 47 1048 82 HOH TIP . E 3 HOH A 48 1049 84 HOH TIP . E 3 HOH A 49 1050 85 HOH TIP . E 3 HOH A 50 1051 86 HOH TIP . E 3 HOH A 51 1052 87 HOH TIP . E 3 HOH A 52 1053 89 HOH TIP . E 3 HOH A 53 1054 90 HOH TIP . F 3 HOH B 1 2002 3 HOH TIP . F 3 HOH B 2 2003 5 HOH TIP . F 3 HOH B 3 2004 7 HOH TIP . F 3 HOH B 4 2005 8 HOH TIP . F 3 HOH B 5 2006 10 HOH TIP . F 3 HOH B 6 2007 11 HOH TIP . F 3 HOH B 7 2008 13 HOH TIP . F 3 HOH B 8 2009 23 HOH TIP . F 3 HOH B 9 2010 25 HOH TIP . F 3 HOH B 10 2011 29 HOH TIP . F 3 HOH B 11 2012 30 HOH TIP . F 3 HOH B 12 2013 31 HOH TIP . F 3 HOH B 13 2014 38 HOH TIP . F 3 HOH B 14 2015 40 HOH TIP . F 3 HOH B 15 2016 41 HOH TIP . F 3 HOH B 16 2017 43 HOH TIP . F 3 HOH B 17 2018 46 HOH TIP . F 3 HOH B 18 2019 50 HOH TIP . F 3 HOH B 19 2020 51 HOH TIP . F 3 HOH B 20 2021 53 HOH TIP . F 3 HOH B 21 2022 56 HOH TIP . F 3 HOH B 22 2023 59 HOH TIP . F 3 HOH B 23 2024 60 HOH TIP . F 3 HOH B 24 2025 61 HOH TIP . F 3 HOH B 25 2026 63 HOH TIP . F 3 HOH B 26 2027 66 HOH TIP . F 3 HOH B 27 2028 68 HOH TIP . F 3 HOH B 28 2029 69 HOH TIP . F 3 HOH B 29 2030 70 HOH TIP . F 3 HOH B 30 2031 71 HOH TIP . F 3 HOH B 31 2032 72 HOH TIP . F 3 HOH B 32 2033 74 HOH TIP . F 3 HOH B 33 2034 77 HOH TIP . F 3 HOH B 34 2035 83 HOH TIP . F 3 HOH B 35 2036 88 HOH TIP . F 3 HOH B 36 2037 91 HOH TIP . F 3 HOH B 37 2038 92 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 I12 . . . D 2 -47.486 17.089 -51.555 1 64.45 ? N1 I12 2001 B 1 HETATM 2 C C1 I12 . . . D 2 -46.928 17.323 -52.792 1 64.46 ? C1 I12 2001 B 1 HETATM 3 C C2 I12 . . . D 2 -47.81 16.573 -53.689 1 64.74 ? C2 I12 2001 B 1 HETATM 4 C C3 I12 . . . D 2 -48.864 15.976 -52.934 1 65.65 ? C3 I12 2001 B 1 HETATM 5 C C4 I12 . . . D 2 -49.939 15.18 -53.427 1 65.55 ? C4 I12 2001 B 1 HETATM 6 O O1 I12 . . . D 2 -48.761 16.238 -51.589 1 65.1 ? O1 I12 2001 B 1 HETATM 7 C C5 I12 . . . D 2 -45.607 18.189 -52.375 1 63.01 ? C5 I12 2001 B 1 HETATM 8 O O2 I12 . . . D 2 -44.542 18.87 -52.813 1 64.77 ? O2 I12 2001 B 1 HETATM 9 N N2 I12 . . . D 2 -45.762 18.698 -51.325 1 58.48 ? N2 I12 2001 B 1 HETATM 10 C C6 I12 . . . D 2 -45.441 19.1 -50.242 1 52.72 ? C6 I12 2001 B 1 HETATM 11 C C7 I12 . . . D 2 -46.338 18.298 -49.399 1 50.26 ? C7 I12 2001 B 1 HETATM 12 O O3 I12 . . . D 2 -47.508 18.516 -49.467 1 49 ? O3 I12 2001 B 1 HETATM 13 C C8 I12 . . . D 2 -45.806 20.521 -50.162 1 53.5 ? C8 I12 2001 B 1 HETATM 14 N N3 I12 . . . D 2 -46.173 18.205 -48.142 1 45.93 ? N3 I12 2001 B 1 HETATM 15 C C9 I12 . . . D 2 -46.661 17.255 -47.146 1 45.64 ? C9 I12 2001 B 1 HETATM 16 C C10 I12 . . . D 2 -45.887 15.866 -47.416 1 45.27 ? C10 I12 2001 B 1 HETATM 17 C C11 I12 . . . D 2 -46.562 14.633 -46.728 1 45.06 ? C11 I12 2001 B 1 HETATM 18 C C12 I12 . . . D 2 -45.804 15.548 -48.901 1 44.95 ? C12 I12 2001 B 1 HETATM 19 C C13 I12 . . . D 2 -47.012 17.671 -46.043 1 45.52 ? C13 I12 2001 B 1 HETATM 20 O O4 I12 . . . D 2 -45.944 18.195 -45.55 1 45.75 ? O4 I12 2001 B 1 HETATM 21 N N4 I12 . . . D 2 -48.118 17.597 -45.508 1 43.73 ? N4 I12 2001 B 1 HETATM 22 C C14 I12 . . . D 2 -48.733 18.279 -44.176 1 44.66 ? C14 I12 2001 B 1 HETATM 23 C C15 I12 . . . D 2 -50.249 18.538 -44.114 1 43.41 ? C15 I12 2001 B 1 HETATM 24 C C16 I12 . . . D 2 -50.85 19.659 -44.99 1 44.27 ? C16 I12 2001 B 1 HETATM 25 C C17 I12 . . . D 2 -50.259 21.023 -44.679 1 44.15 ? C17 I12 2001 B 1 HETATM 26 C C18 I12 . . . D 2 -52.356 19.692 -44.745 1 44.59 ? C18 I12 2001 B 1 HETATM 27 C C19 I12 . . . D 2 -48.31 17.194 -43.167 1 63.57 ? C19 I12 2001 B 1 HETATM 28 O O5 I12 . . . D 2 -48.477 15.951 -43.508 1 62.93 ? O5 I12 2001 B 1 HETATM 29 N N5 I12 . . . D 2 -47.856 17.353 -42.02 1 62.53 ? N5 I12 2001 B 1 HETATM 30 C C20 I12 . . . D 2 -46.821 16.498 -41.62 1 62.82 ? C20 I12 2001 B 1 HETATM 31 C C21 I12 . . . D 2 -47.291 16.093 -40.243 1 64.84 ? C21 I12 2001 B 1 HETATM 32 C C22 I12 . . . D 2 -48.507 15.196 -40.248 1 65.47 ? C22 I12 2001 B 1 HETATM 33 C C23 I12 . . . D 2 -48.605 13.689 -40.387 1 67.17 ? C23 I12 2001 B 1 HETATM 34 O O6 I12 . . . D 2 -47.86 12.985 -39.681 1 66.87 ? O6 I12 2001 B 1 HETATM 35 O O7 I12 . . . D 2 -49.613 13.369 -41.258 1 67.7 ? O7 I12 2001 B 1 HETATM 36 C C24 I12 . . . D 2 -49.844 12.021 -41.701 1 68.33 ? C24 I12 2001 B 1 HETATM 37 C C25 I12 . . . D 2 -50.9 12.009 -42.703 1 69.17 ? C25 I12 2001 B 1 HETATM 38 C C26 I12 . . . D 2 -45.404 16.476 -41.195 1 36.57 ? C26 I12 2001 B 1 HETATM 39 C C27 I12 . . . D 2 -44.423 16.038 -42.189 1 35.35 ? C27 I12 2001 B 1 HETATM 40 C C28 I12 . . . D 2 -44.264 14.548 -42.269 1 33.84 ? C28 I12 2001 B 1 HETATM 41 C C29 I12 . . . D 2 -42.89 14.423 -42.902 1 34.32 ? C29 I12 2001 B 1 HETATM 42 N N6 I12 . . . D 2 -42.223 15.58 -42.351 1 35.4 ? N6 I12 2001 B 1 HETATM 43 C C30 I12 . . . D 2 -43.05 16.508 -41.941 1 33.2 ? C30 I12 2001 B 1 HETATM 44 O O8 I12 . . . D 2 -42.757 17.494 -41.371 1 48.52 ? O8 I12 2001 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #