data_2AMY
#
_model_server_result.job_id            ZJXO_R6pSh0fqwS4B2qWtA 
_model_server_result.datetime_utc      '2024-11-27 06:17:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2amy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    2AMY 
#
_exptl.entry_id    2AMY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2AMY 
_cell.length_a            70.622 
_cell.length_b            70.622 
_cell.length_c            100.15 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2AMY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 27 A GLU 27 1_555 A N MSE 28 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C MSE 28 A MSE 28 1_555 A N ASP 29 A ASP 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 A C GLY 125 A GLY 125 1_555 A N MSE 126 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C MSE 126 A MSE 126 1_555 A N LEU 127 A LEU 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C THR 211 A THR 211 1_555 A N MSE 212 A MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A O ASP 223 A ASP 223 1_555 D N GLY . A GLY 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale7 A C THR 226 A THR 226 1_555 A N MSE 227 A MSE 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 A C MSE 227 A MSE 227 1_555 A N GLY 228 A GLY 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2AMY 
_atom_sites.fract_transf_matrix[1][1]    0.01416 
_atom_sites.fract_transf_matrix[1][2]    0.00817 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 300 300 EDO EDO . 
C 3 GLY A 1 400 400 GLY GLY . 
D 3 GLY A 1 401 401 GLY GLY . 
E 3 GLY A 1 402 402 GLY GLY . 
F 4 HOH A 1 403 1 HOH HOH . 
F 4 HOH A 2 404 2 HOH HOH . 
F 4 HOH A 3 405 3 HOH HOH . 
F 4 HOH A 4 406 4 HOH HOH . 
F 4 HOH A 5 407 5 HOH HOH . 
F 4 HOH A 6 408 6 HOH HOH . 
F 4 HOH A 7 409 7 HOH HOH . 
F 4 HOH A 8 410 8 HOH HOH . 
F 4 HOH A 9 411 9 HOH HOH . 
F 4 HOH A 10 412 10 HOH HOH . 
F 4 HOH A 11 413 11 HOH HOH . 
F 4 HOH A 12 414 12 HOH HOH . 
F 4 HOH A 13 415 13 HOH HOH . 
F 4 HOH A 14 416 14 HOH HOH . 
F 4 HOH A 15 417 15 HOH HOH . 
F 4 HOH A 16 418 16 HOH HOH . 
F 4 HOH A 17 419 17 HOH HOH . 
F 4 HOH A 18 420 18 HOH HOH . 
F 4 HOH A 19 421 19 HOH HOH . 
F 4 HOH A 20 422 20 HOH HOH . 
F 4 HOH A 21 423 21 HOH HOH . 
F 4 HOH A 22 424 22 HOH HOH . 
F 4 HOH A 23 425 23 HOH HOH . 
F 4 HOH A 24 426 24 HOH HOH . 
F 4 HOH A 25 427 25 HOH HOH . 
F 4 HOH A 26 428 26 HOH HOH . 
F 4 HOH A 27 429 27 HOH HOH . 
F 4 HOH A 28 430 28 HOH HOH . 
F 4 HOH A 29 431 29 HOH HOH . 
F 4 HOH A 30 432 30 HOH HOH . 
F 4 HOH A 31 433 31 HOH HOH . 
F 4 HOH A 32 434 32 HOH HOH . 
F 4 HOH A 33 435 33 HOH HOH . 
F 4 HOH A 34 436 34 HOH HOH . 
F 4 HOH A 35 437 35 HOH HOH . 
F 4 HOH A 36 438 36 HOH HOH . 
F 4 HOH A 37 439 37 HOH HOH . 
F 4 HOH A 38 440 38 HOH HOH . 
F 4 HOH A 39 441 39 HOH HOH . 
F 4 HOH A 40 442 40 HOH HOH . 
F 4 HOH A 41 443 41 HOH HOH . 
F 4 HOH A 42 444 42 HOH HOH . 
F 4 HOH A 43 445 43 HOH HOH . 
F 4 HOH A 44 446 44 HOH HOH . 
F 4 HOH A 45 447 45 HOH HOH . 
F 4 HOH A 46 448 46 HOH HOH . 
F 4 HOH A 47 449 47 HOH HOH . 
F 4 HOH A 48 450 48 HOH HOH . 
F 4 HOH A 49 451 49 HOH HOH . 
F 4 HOH A 50 452 50 HOH HOH . 
F 4 HOH A 51 453 51 HOH HOH . 
F 4 HOH A 52 454 52 HOH HOH . 
F 4 HOH A 53 455 53 HOH HOH . 
F 4 HOH A 54 456 54 HOH HOH . 
F 4 HOH A 55 457 55 HOH HOH . 
F 4 HOH A 56 458 56 HOH HOH . 
F 4 HOH A 57 459 57 HOH HOH . 
F 4 HOH A 58 460 58 HOH HOH . 
F 4 HOH A 59 461 59 HOH HOH . 
F 4 HOH A 60 462 60 HOH HOH . 
F 4 HOH A 61 463 61 HOH HOH . 
F 4 HOH A 62 464 62 HOH HOH . 
F 4 HOH A 63 465 63 HOH HOH . 
F 4 HOH A 64 466 64 HOH HOH . 
F 4 HOH A 65 467 65 HOH HOH . 
F 4 HOH A 66 468 66 HOH HOH . 
F 4 HOH A 67 469 67 HOH HOH . 
F 4 HOH A 68 470 68 HOH HOH . 
F 4 HOH A 69 471 69 HOH HOH . 
F 4 HOH A 70 472 70 HOH HOH . 
F 4 HOH A 71 473 71 HOH HOH . 
F 4 HOH A 72 474 72 HOH HOH . 
F 4 HOH A 73 475 73 HOH HOH . 
F 4 HOH A 74 476 74 HOH HOH . 
F 4 HOH A 75 477 75 HOH HOH . 
F 4 HOH A 76 478 76 HOH HOH . 
F 4 HOH A 77 479 77 HOH HOH . 
F 4 HOH A 78 480 78 HOH HOH . 
F 4 HOH A 79 481 79 HOH HOH . 
F 4 HOH A 80 482 80 HOH HOH . 
F 4 HOH A 81 483 81 HOH HOH . 
F 4 HOH A 82 484 82 HOH HOH . 
F 4 HOH A 83 485 83 HOH HOH . 
F 4 HOH A 84 486 84 HOH HOH . 
F 4 HOH A 85 487 85 HOH HOH . 
F 4 HOH A 86 488 86 HOH HOH . 
F 4 HOH A 87 489 87 HOH HOH . 
F 4 HOH A 88 490 88 HOH HOH . 
F 4 HOH A 89 491 89 HOH HOH . 
F 4 HOH A 90 492 90 HOH HOH . 
F 4 HOH A 91 493 91 HOH HOH . 
F 4 HOH A 92 494 92 HOH HOH . 
F 4 HOH A 93 495 93 HOH HOH . 
F 4 HOH A 94 496 94 HOH HOH . 
F 4 HOH A 95 497 95 HOH HOH . 
F 4 HOH A 96 498 96 HOH HOH . 
F 4 HOH A 97 499 97 HOH HOH . 
F 4 HOH A 98 500 98 HOH HOH . 
F 4 HOH A 99 501 99 HOH HOH . 
F 4 HOH A 100 502 100 HOH HOH . 
F 4 HOH A 101 503 101 HOH HOH . 
F 4 HOH A 102 504 102 HOH HOH . 
F 4 HOH A 103 505 103 HOH HOH . 
F 4 HOH A 104 506 104 HOH HOH . 
F 4 HOH A 105 507 105 HOH HOH . 
F 4 HOH A 106 508 106 HOH HOH . 
F 4 HOH A 107 509 107 HOH HOH . 
F 4 HOH A 108 510 108 HOH HOH . 
F 4 HOH A 109 511 109 HOH HOH . 
F 4 HOH A 110 512 110 HOH HOH . 
F 4 HOH A 111 513 111 HOH HOH . 
F 4 HOH A 112 514 112 HOH HOH . 
F 4 HOH A 113 515 113 HOH HOH . 
F 4 HOH A 114 516 114 HOH HOH . 
F 4 HOH A 115 517 115 HOH HOH . 
F 4 HOH A 116 518 116 HOH HOH . 
F 4 HOH A 117 519 117 HOH HOH . 
F 4 HOH A 118 520 118 HOH HOH . 
F 4 HOH A 119 521 119 HOH HOH . 
F 4 HOH A 120 522 120 HOH HOH . 
F 4 HOH A 121 523 121 HOH HOH . 
F 4 HOH A 122 524 122 HOH HOH . 
F 4 HOH A 123 525 123 HOH HOH . 
F 4 HOH A 124 526 124 HOH HOH . 
F 4 HOH A 125 527 125 HOH HOH . 
F 4 HOH A 126 528 126 HOH HOH . 
F 4 HOH A 127 529 127 HOH HOH . 
F 4 HOH A 128 530 128 HOH HOH . 
F 4 HOH A 129 531 129 HOH HOH . 
F 4 HOH A 130 532 130 HOH HOH . 
F 4 HOH A 131 533 131 HOH HOH . 
F 4 HOH A 132 534 132 HOH HOH . 
F 4 HOH A 133 535 133 HOH HOH . 
F 4 HOH A 134 536 134 HOH HOH . 
F 4 HOH A 135 537 135 HOH HOH . 
F 4 HOH A 136 538 136 HOH HOH . 
F 4 HOH A 137 539 137 HOH HOH . 
F 4 HOH A 138 540 138 HOH HOH . 
F 4 HOH A 139 541 139 HOH HOH . 
F 4 HOH A 140 542 140 HOH HOH . 
F 4 HOH A 141 543 141 HOH HOH . 
F 4 HOH A 142 544 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . D 3 28.538 -22.57 -10.87 1 61.54 ? N GLY 401 A 1 
HETATM 2 C CA GLY . . . D 3 29.235 -23.604 -10.098 1 63.51 ? CA GLY 401 A 1 
HETATM 3 C C GLY . . . D 3 29.311 -24.924 -10.821 1 65.42 ? C GLY 401 A 1 
HETATM 4 O O GLY . . . D 3 28.352 -25.242 -11.545 1 66.14 ? O GLY 401 A 1 
HETATM 5 O OXT GLY . . . D 3 30.304 -25.67 -10.664 1 62.99 ? OXT GLY 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#