data_2AN5 # _model_server_result.job_id 9MHB0B79Txquu7jYh6N7Zw _model_server_result.datetime_utc '2024-11-22 15:12:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2an5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1301}' # _entry.id 2AN5 # _exptl.entry_id 2AN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AN5 _cell.length_a 94.02 _cell.length_b 94.02 _cell.length_c 187.51 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 281 n n N HN1 SAH sing 282 n n N HN2 SAH sing 283 n n CA CB SAH sing 284 n n CA C SAH sing 285 n n CA HA SAH sing 286 n n CB CG SAH sing 287 n n CB HB1 SAH sing 288 n n CB HB2 SAH sing 289 n n CG SD SAH sing 290 n n CG HG1 SAH sing 291 n n CG HG2 SAH sing 292 n n SD C5' SAH sing 293 n n C O SAH doub 294 n n C OXT SAH sing 295 n n OXT HXT SAH sing 296 n n C5' C4' SAH sing 297 n n C5' "H5'1" SAH sing 298 n n C5' "H5'2" SAH sing 299 n n C4' O4' SAH sing 300 n n C4' C3' SAH sing 301 n n C4' H4' SAH sing 302 n n O4' C1' SAH sing 303 n n C3' O3' SAH sing 304 n n C3' C2' SAH sing 305 n n C3' H3' SAH sing 306 n n O3' HO3' SAH sing 307 n n C2' O2' SAH sing 308 n n C2' C1' SAH sing 309 n n C2' H2' SAH sing 310 n n O2' HO2' SAH sing 311 n n C1' N9 SAH sing 312 n n C1' H1' SAH sing 313 n n N9 C8 SAH sing 314 n y N9 C4 SAH sing 315 n y C8 N7 SAH doub 316 n y C8 H8 SAH sing 317 n n N7 C5 SAH sing 318 n y C5 C6 SAH sing 319 n y C5 C4 SAH doub 320 n y C6 N6 SAH sing 321 n n C6 N1 SAH doub 322 n y N6 HN61 SAH sing 323 n n N6 HN62 SAH sing 324 n n N1 C2 SAH sing 325 n y C2 N3 SAH doub 326 n y C2 H2 SAH sing 327 n n N3 C4 SAH sing 328 n y # _atom_sites.entry_id 2AN5 _atom_sites.fract_transf_matrix[1][1] 0.010636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005333 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 1301 1301 SAH SAH . D 3 TTL A 1 1401 1401 TTL TTL . E 4 PO4 B 1 1501 1501 PO4 PO4 . F 2 SAH B 1 2301 2301 SAH SAH . G 3 TTL B 1 2401 2401 TTL TTL . H 5 HOH A 1 1001 1001 HOH HOH . H 5 HOH A 2 1002 1002 HOH HOH . H 5 HOH A 3 1003 1003 HOH HOH . H 5 HOH A 4 1004 1004 HOH HOH . H 5 HOH A 5 1005 1005 HOH HOH . H 5 HOH A 6 1006 1006 HOH HOH . H 5 HOH A 7 1026 1026 HOH HOH . H 5 HOH A 8 1027 1027 HOH HOH . H 5 HOH A 9 1030 1030 HOH HOH . H 5 HOH A 10 1035 1035 HOH HOH . H 5 HOH A 11 1037 1037 HOH HOH . H 5 HOH A 12 1040 1040 HOH HOH . H 5 HOH A 13 1042 1042 HOH HOH . H 5 HOH A 14 1044 1044 HOH HOH . H 5 HOH A 15 1045 1045 HOH HOH . H 5 HOH A 16 1046 1046 HOH HOH . H 5 HOH A 17 1047 1047 HOH HOH . H 5 HOH A 18 1048 1048 HOH HOH . H 5 HOH A 19 1049 1049 HOH HOH . H 5 HOH A 20 1051 1051 HOH HOH . H 5 HOH A 21 1057 1057 HOH HOH . H 5 HOH A 22 1058 1058 HOH HOH . H 5 HOH A 23 1059 1059 HOH HOH . H 5 HOH A 24 1060 1060 HOH HOH . H 5 HOH A 25 1062 1062 HOH HOH . H 5 HOH A 26 1063 1063 HOH HOH . H 5 HOH A 27 1064 1064 HOH HOH . H 5 HOH A 28 1065 1065 HOH HOH . H 5 HOH A 29 1066 1066 HOH HOH . H 5 HOH A 30 1070 1070 HOH HOH . H 5 HOH A 31 1071 1071 HOH HOH . H 5 HOH A 32 1072 1072 HOH HOH . H 5 HOH A 33 1075 1075 HOH HOH . H 5 HOH A 34 1076 1076 HOH HOH . H 5 HOH A 35 1077 1077 HOH HOH . H 5 HOH A 36 1079 1079 HOH HOH . H 5 HOH A 37 1080 1080 HOH HOH . H 5 HOH A 38 1081 1081 HOH HOH . H 5 HOH A 39 1082 1082 HOH HOH . H 5 HOH A 40 1083 1083 HOH HOH . H 5 HOH A 41 1087 1087 HOH HOH . H 5 HOH A 42 1088 1088 HOH HOH . H 5 HOH A 43 1089 1089 HOH HOH . H 5 HOH A 44 1090 1090 HOH HOH . H 5 HOH A 45 1096 1096 HOH HOH . H 5 HOH A 46 1097 1097 HOH HOH . H 5 HOH A 47 1103 1103 HOH HOH . H 5 HOH A 48 1104 1104 HOH HOH . H 5 HOH A 49 1108 1108 HOH HOH . H 5 HOH A 50 1109 1109 HOH HOH . H 5 HOH A 51 1111 1111 HOH HOH . H 5 HOH A 52 1114 1114 HOH HOH . H 5 HOH A 53 1116 1116 HOH HOH . H 5 HOH A 54 1117 1117 HOH HOH . H 5 HOH A 55 1118 1118 HOH HOH . H 5 HOH A 56 1119 1119 HOH HOH . H 5 HOH A 57 1121 1121 HOH HOH . H 5 HOH A 58 1125 1125 HOH HOH . H 5 HOH A 59 1127 1127 HOH HOH . H 5 HOH A 60 1128 1128 HOH HOH . H 5 HOH A 61 1129 1129 HOH HOH . H 5 HOH A 62 1130 1130 HOH HOH . H 5 HOH A 63 1136 1136 HOH HOH . H 5 HOH A 64 1140 1140 HOH HOH . H 5 HOH A 65 1148 1148 HOH HOH . H 5 HOH A 66 1151 1151 HOH HOH . H 5 HOH A 67 1152 1152 HOH HOH . H 5 HOH A 68 1155 1155 HOH HOH . H 5 HOH A 69 1157 1157 HOH HOH . H 5 HOH A 70 1158 1158 HOH HOH . H 5 HOH A 71 1160 1160 HOH HOH . H 5 HOH A 72 1168 1168 HOH HOH . H 5 HOH A 73 1169 1169 HOH HOH . H 5 HOH A 74 1170 1170 HOH HOH . H 5 HOH A 75 1171 1171 HOH HOH . I 5 HOH B 1 1007 1007 HOH HOH . I 5 HOH B 2 1008 1008 HOH HOH . I 5 HOH B 3 1009 1009 HOH HOH . I 5 HOH B 4 1010 1010 HOH HOH . I 5 HOH B 5 1011 1011 HOH HOH . I 5 HOH B 6 1012 1012 HOH HOH . I 5 HOH B 7 1013 1013 HOH HOH . I 5 HOH B 8 1014 1014 HOH HOH . I 5 HOH B 9 1015 1015 HOH HOH . I 5 HOH B 10 1016 1016 HOH HOH . I 5 HOH B 11 1017 1017 HOH HOH . I 5 HOH B 12 1018 1018 HOH HOH . I 5 HOH B 13 1019 1019 HOH HOH . I 5 HOH B 14 1020 1020 HOH HOH . I 5 HOH B 15 1021 1021 HOH HOH . I 5 HOH B 16 1022 1022 HOH HOH . I 5 HOH B 17 1023 1023 HOH HOH . I 5 HOH B 18 1024 1024 HOH HOH . I 5 HOH B 19 1025 1025 HOH HOH . I 5 HOH B 20 1028 1028 HOH HOH . I 5 HOH B 21 1029 1029 HOH HOH . I 5 HOH B 22 1031 1031 HOH HOH . I 5 HOH B 23 1032 1032 HOH HOH . I 5 HOH B 24 1033 1033 HOH HOH . I 5 HOH B 25 1034 1034 HOH HOH . I 5 HOH B 26 1036 1036 HOH HOH . I 5 HOH B 27 1038 1038 HOH HOH . I 5 HOH B 28 1039 1039 HOH HOH . I 5 HOH B 29 1041 1041 HOH HOH . I 5 HOH B 30 1043 1043 HOH HOH . I 5 HOH B 31 1050 1050 HOH HOH . I 5 HOH B 32 1052 1052 HOH HOH . I 5 HOH B 33 1053 1053 HOH HOH . I 5 HOH B 34 1054 1054 HOH HOH . I 5 HOH B 35 1055 1055 HOH HOH . I 5 HOH B 36 1056 1056 HOH HOH . I 5 HOH B 37 1061 1061 HOH HOH . I 5 HOH B 38 1067 1067 HOH HOH . I 5 HOH B 39 1068 1068 HOH HOH . I 5 HOH B 40 1069 1069 HOH HOH . I 5 HOH B 41 1073 1073 HOH HOH . I 5 HOH B 42 1074 1074 HOH HOH . I 5 HOH B 43 1078 1078 HOH HOH . I 5 HOH B 44 1084 1084 HOH HOH . I 5 HOH B 45 1085 1085 HOH HOH . I 5 HOH B 46 1086 1086 HOH HOH . I 5 HOH B 47 1091 1091 HOH HOH . I 5 HOH B 48 1092 1092 HOH HOH . I 5 HOH B 49 1093 1093 HOH HOH . I 5 HOH B 50 1094 1094 HOH HOH . I 5 HOH B 51 1095 1095 HOH HOH . I 5 HOH B 52 1098 1098 HOH HOH . I 5 HOH B 53 1099 1099 HOH HOH . I 5 HOH B 54 1100 1100 HOH HOH . I 5 HOH B 55 1101 1101 HOH HOH . I 5 HOH B 56 1102 1102 HOH HOH . I 5 HOH B 57 1105 1105 HOH HOH . I 5 HOH B 58 1106 1106 HOH HOH . I 5 HOH B 59 1107 1107 HOH HOH . I 5 HOH B 60 1110 1110 HOH HOH . I 5 HOH B 61 1112 1112 HOH HOH . I 5 HOH B 62 1113 1113 HOH HOH . I 5 HOH B 63 1115 1115 HOH HOH . I 5 HOH B 64 1120 1120 HOH HOH . I 5 HOH B 65 1122 1122 HOH HOH . I 5 HOH B 66 1123 1123 HOH HOH . I 5 HOH B 67 1124 1124 HOH HOH . I 5 HOH B 68 1126 1126 HOH HOH . I 5 HOH B 69 1131 1131 HOH HOH . I 5 HOH B 70 1132 1132 HOH HOH . I 5 HOH B 71 1133 1133 HOH HOH . I 5 HOH B 72 1134 1134 HOH HOH . I 5 HOH B 73 1135 1135 HOH HOH . I 5 HOH B 74 1137 1137 HOH HOH . I 5 HOH B 75 1138 1138 HOH HOH . I 5 HOH B 76 1139 1139 HOH HOH . I 5 HOH B 77 1141 1141 HOH HOH . I 5 HOH B 78 1142 1142 HOH HOH . I 5 HOH B 79 1143 1143 HOH HOH . I 5 HOH B 80 1144 1144 HOH HOH . I 5 HOH B 81 1145 1145 HOH HOH . I 5 HOH B 82 1146 1146 HOH HOH . I 5 HOH B 83 1147 1147 HOH HOH . I 5 HOH B 84 1149 1149 HOH HOH . I 5 HOH B 85 1150 1150 HOH HOH . I 5 HOH B 86 1153 1153 HOH HOH . I 5 HOH B 87 1154 1154 HOH HOH . I 5 HOH B 88 1156 1156 HOH HOH . I 5 HOH B 89 1159 1159 HOH HOH . I 5 HOH B 90 1161 1161 HOH HOH . I 5 HOH B 91 1162 1162 HOH HOH . I 5 HOH B 92 1163 1163 HOH HOH . I 5 HOH B 93 1164 1164 HOH HOH . I 5 HOH B 94 1165 1165 HOH HOH . I 5 HOH B 95 1166 1166 HOH HOH . I 5 HOH B 96 1167 1167 HOH HOH . I 5 HOH B 97 1172 1172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 26.864 52.785 18.345 1 54.4 ? N SAH 1301 A 1 HETATM 2 C CA SAH . . . C 2 28.011 52.246 17.62 1 53.88 ? CA SAH 1301 A 1 HETATM 3 C CB SAH . . . C 2 29.184 51.995 18.6 1 54.85 ? CB SAH 1301 A 1 HETATM 4 C CG SAH . . . C 2 28.865 51.153 19.849 1 54.04 ? CG SAH 1301 A 1 HETATM 5 S SD SAH . . . C 2 30.354 50.801 20.82 1 53.55 ? SD SAH 1301 A 1 HETATM 6 C C SAH . . . C 2 27.656 50.987 16.801 1 52.7 ? C SAH 1301 A 1 HETATM 7 O O SAH . . . C 2 26.452 50.772 16.547 1 51.97 ? O SAH 1301 A 1 HETATM 8 O OXT SAH . . . C 2 28.578 50.248 16.387 1 50.91 ? OXT SAH 1301 A 1 HETATM 9 C C5' SAH . . . C 2 29.931 51.479 22.452 1 55.61 ? C5' SAH 1301 A 1 HETATM 10 C C4' SAH . . . C 2 30.216 52.965 22.506 1 56.45 ? C4' SAH 1301 A 1 HETATM 11 O O4' SAH . . . C 2 29.828 53.548 23.779 1 56.33 ? O4' SAH 1301 A 1 HETATM 12 C C3' SAH . . . C 2 31.658 53.395 22.249 1 56.37 ? C3' SAH 1301 A 1 HETATM 13 O O3' SAH . . . C 2 31.687 54.389 21.236 1 54.36 ? O3' SAH 1301 A 1 HETATM 14 C C2' SAH . . . C 2 32.123 53.912 23.609 1 56.58 ? C2' SAH 1301 A 1 HETATM 15 O O2' SAH . . . C 2 33.12 54.912 23.521 1 57.7 ? O2' SAH 1301 A 1 HETATM 16 C C1' SAH . . . C 2 30.821 54.471 24.176 1 56.64 ? C1' SAH 1301 A 1 HETATM 17 N N9 SAH . . . C 2 30.764 54.621 25.632 1 58.38 ? N9 SAH 1301 A 1 HETATM 18 C C8 SAH . . . C 2 31.683 54.168 26.64 1 58.09 ? C8 SAH 1301 A 1 HETATM 19 N N7 SAH . . . C 2 31.317 54.5 27.855 1 58.21 ? N7 SAH 1301 A 1 HETATM 20 C C5 SAH . . . C 2 30.124 55.187 27.656 1 59.74 ? C5 SAH 1301 A 1 HETATM 21 C C6 SAH . . . C 2 29.279 55.797 28.612 1 61.22 ? C6 SAH 1301 A 1 HETATM 22 N N6 SAH . . . C 2 29.519 55.798 29.924 1 64.14 ? N6 SAH 1301 A 1 HETATM 23 N N1 SAH . . . C 2 28.157 56.424 28.151 1 61.26 ? N1 SAH 1301 A 1 HETATM 24 C C2 SAH . . . C 2 27.926 56.431 26.81 1 61.35 ? C2 SAH 1301 A 1 HETATM 25 N N3 SAH . . . C 2 28.668 55.886 25.816 1 59.81 ? N3 SAH 1301 A 1 HETATM 26 C C4 SAH . . . C 2 29.767 55.27 26.317 1 59.79 ? C4 SAH 1301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #