data_2AN9 # _model_server_result.job_id Y1nrdLnDPGnKJhnzJrs3oA _model_server_result.datetime_utc '2024-11-08 12:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2an9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1602}' # _entry.id 2AN9 # _exptl.entry_id 2AN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AN9 _cell.length_a 68.225 _cell.length_b 68.225 _cell.length_c 151.272 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 38 A SER 38 1_555 C K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc2 A O ASP 102 A ASP 102 1_555 C K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc3 D N7 GDP . A GDP 601 1_555 C K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc4 C K K . A K 603 1_555 I O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc5 C K K . A K 603 1_555 I O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc6 B OG SER 38 B SER 38 1_555 F K K . B K 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc7 B O ASP 102 B ASP 102 1_555 F K K . B K 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc8 G N7 GDP . B GDP 1601 1_555 F K K . B K 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? metalc ? metalc9 F K K . B K 1603 1_555 J O HOH . B HOH 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc10 F K K . B K 1603 1_555 J O HOH . B HOH 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc11 F K K . B K 1603 1_555 J O HOH . B HOH 1638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id GMP _chem_comp.mon_nstd_flag . _chem_comp.name GUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GMP sing 161 n n O5' HO5' GMP sing 162 n n C5' C4' GMP sing 163 n n C5' "H5'1" GMP sing 164 n n C5' "H5'2" GMP sing 165 n n C4' O4' GMP sing 166 n n C4' C3' GMP sing 167 n n C4' H4' GMP sing 168 n n O4' C1' GMP sing 169 n n C3' O3' GMP sing 170 n n C3' C2' GMP sing 171 n n C3' H3' GMP sing 172 n n O3' HO3' GMP sing 173 n n C2' O2' GMP sing 174 n n C2' C1' GMP sing 175 n n C2' H2' GMP sing 176 n n O2' HO2' GMP sing 177 n n C1' N9 GMP sing 178 n n C1' H1' GMP sing 179 n n N9 C8 GMP sing 180 n y N9 C4 GMP sing 181 n y C8 N7 GMP doub 182 n y C8 H8 GMP sing 183 n n N7 C5 GMP sing 184 n y C5 C6 GMP sing 185 n n C5 C4 GMP doub 186 n y C6 O6 GMP doub 187 n n C6 N1 GMP sing 188 n n N1 C2 GMP sing 189 n n N1 HN1 GMP sing 190 n n C2 N2 GMP sing 191 n n C2 N3 GMP doub 192 n n N2 HN21 GMP sing 193 n n N2 HN22 GMP sing 194 n n N3 C4 GMP sing 195 n n # _atom_sites.entry_id 2AN9 _atom_sites.fract_transf_matrix[1][1] 0.014657 _atom_sites.fract_transf_matrix[1][2] 0.008462 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 603 603 K K . D 3 GDP A 1 601 601 GDP GDP . E 4 GMP A 1 602 602 GMP GMP . F 2 K B 1 1603 603 K K . G 3 GDP B 1 1601 601 GDP GDP . H 4 GMP B 1 1602 602 GMP GMP . I 5 HOH A 1 604 4 HOH HOH . I 5 HOH A 2 605 6 HOH HOH . I 5 HOH A 3 606 10 HOH HOH . I 5 HOH A 4 607 11 HOH HOH . I 5 HOH A 5 608 17 HOH HOH . I 5 HOH A 6 609 19 HOH HOH . I 5 HOH A 7 610 21 HOH HOH . I 5 HOH A 8 611 22 HOH HOH . I 5 HOH A 9 612 25 HOH HOH . I 5 HOH A 10 613 27 HOH HOH . I 5 HOH A 11 614 29 HOH HOH . I 5 HOH A 12 615 32 HOH HOH . I 5 HOH A 13 616 33 HOH HOH . I 5 HOH A 14 617 34 HOH HOH . I 5 HOH A 15 618 38 HOH HOH . I 5 HOH A 16 619 42 HOH HOH . I 5 HOH A 17 620 43 HOH HOH . I 5 HOH A 18 621 48 HOH HOH . I 5 HOH A 19 622 50 HOH HOH . I 5 HOH A 20 623 54 HOH HOH . I 5 HOH A 21 624 56 HOH HOH . I 5 HOH A 22 625 57 HOH HOH . I 5 HOH A 23 626 58 HOH HOH . I 5 HOH A 24 627 61 HOH HOH . I 5 HOH A 25 628 62 HOH HOH . I 5 HOH A 26 629 64 HOH HOH . I 5 HOH A 27 630 65 HOH HOH . I 5 HOH A 28 631 66 HOH HOH . I 5 HOH A 29 632 69 HOH HOH . I 5 HOH A 30 633 70 HOH HOH . I 5 HOH A 31 634 71 HOH HOH . I 5 HOH A 32 635 74 HOH HOH . I 5 HOH A 33 636 75 HOH HOH . I 5 HOH A 34 637 76 HOH HOH . I 5 HOH A 35 638 79 HOH HOH . I 5 HOH A 36 639 80 HOH HOH . I 5 HOH A 37 640 87 HOH HOH . I 5 HOH A 38 641 94 HOH HOH . I 5 HOH A 39 642 95 HOH HOH . I 5 HOH A 40 643 96 HOH HOH . I 5 HOH A 41 644 99 HOH HOH . I 5 HOH A 42 645 103 HOH HOH . I 5 HOH A 43 646 104 HOH HOH . I 5 HOH A 44 647 105 HOH HOH . I 5 HOH A 45 648 106 HOH HOH . I 5 HOH A 46 649 107 HOH HOH . I 5 HOH A 47 650 109 HOH HOH . I 5 HOH A 48 651 110 HOH HOH . I 5 HOH A 49 652 112 HOH HOH . I 5 HOH A 50 653 113 HOH HOH . I 5 HOH A 51 654 114 HOH HOH . I 5 HOH A 52 655 115 HOH HOH . I 5 HOH A 53 656 116 HOH HOH . I 5 HOH A 54 657 117 HOH HOH . I 5 HOH A 55 658 118 HOH HOH . I 5 HOH A 56 659 119 HOH HOH . I 5 HOH A 57 660 120 HOH HOH . I 5 HOH A 58 661 123 HOH HOH . I 5 HOH A 59 662 124 HOH HOH . I 5 HOH A 60 663 126 HOH HOH . I 5 HOH A 61 664 127 HOH HOH . I 5 HOH A 62 665 129 HOH HOH . I 5 HOH A 63 666 132 HOH HOH . I 5 HOH A 64 667 135 HOH HOH . I 5 HOH A 65 668 136 HOH HOH . I 5 HOH A 66 669 140 HOH HOH . I 5 HOH A 67 670 141 HOH HOH . I 5 HOH A 68 671 148 HOH HOH . I 5 HOH A 69 672 152 HOH HOH . I 5 HOH A 70 673 153 HOH HOH . I 5 HOH A 71 674 154 HOH HOH . I 5 HOH A 72 675 155 HOH HOH . I 5 HOH A 73 676 156 HOH HOH . I 5 HOH A 74 677 158 HOH HOH . I 5 HOH A 75 678 159 HOH HOH . I 5 HOH A 76 679 160 HOH HOH . I 5 HOH A 77 680 162 HOH HOH . I 5 HOH A 78 681 163 HOH HOH . I 5 HOH A 79 682 164 HOH HOH . I 5 HOH A 80 683 166 HOH HOH . I 5 HOH A 81 684 168 HOH HOH . I 5 HOH A 82 685 169 HOH HOH . I 5 HOH A 83 686 170 HOH HOH . I 5 HOH A 84 687 171 HOH HOH . I 5 HOH A 85 688 172 HOH HOH . I 5 HOH A 86 689 174 HOH HOH . I 5 HOH A 87 690 177 HOH HOH . I 5 HOH A 88 691 182 HOH HOH . J 5 HOH B 1 1604 1 HOH HOH . J 5 HOH B 2 1605 2 HOH HOH . J 5 HOH B 3 1606 3 HOH HOH . J 5 HOH B 4 1607 5 HOH HOH . J 5 HOH B 5 1608 7 HOH HOH . J 5 HOH B 6 1609 8 HOH HOH . J 5 HOH B 7 1610 9 HOH HOH . J 5 HOH B 8 1611 12 HOH HOH . J 5 HOH B 9 1612 13 HOH HOH . J 5 HOH B 10 1613 14 HOH HOH . J 5 HOH B 11 1614 15 HOH HOH . J 5 HOH B 12 1615 16 HOH HOH . J 5 HOH B 13 1616 18 HOH HOH . J 5 HOH B 14 1617 20 HOH HOH . J 5 HOH B 15 1618 23 HOH HOH . J 5 HOH B 16 1619 24 HOH HOH . J 5 HOH B 17 1620 26 HOH HOH . J 5 HOH B 18 1621 28 HOH HOH . J 5 HOH B 19 1622 30 HOH HOH . J 5 HOH B 20 1623 31 HOH HOH . J 5 HOH B 21 1624 35 HOH HOH . J 5 HOH B 22 1625 36 HOH HOH . J 5 HOH B 23 1626 37 HOH HOH . J 5 HOH B 24 1627 39 HOH HOH . J 5 HOH B 25 1628 40 HOH HOH . J 5 HOH B 26 1629 41 HOH HOH . J 5 HOH B 27 1630 44 HOH HOH . J 5 HOH B 28 1631 45 HOH HOH . J 5 HOH B 29 1632 46 HOH HOH . J 5 HOH B 30 1633 47 HOH HOH . J 5 HOH B 31 1634 49 HOH HOH . J 5 HOH B 32 1635 51 HOH HOH . J 5 HOH B 33 1636 52 HOH HOH . J 5 HOH B 34 1637 53 HOH HOH . J 5 HOH B 35 1638 55 HOH HOH . J 5 HOH B 36 1639 59 HOH HOH . J 5 HOH B 37 1640 60 HOH HOH . J 5 HOH B 38 1641 63 HOH HOH . J 5 HOH B 39 1642 67 HOH HOH . J 5 HOH B 40 1643 68 HOH HOH . J 5 HOH B 41 1644 72 HOH HOH . J 5 HOH B 42 1645 73 HOH HOH . J 5 HOH B 43 1646 77 HOH HOH . J 5 HOH B 44 1647 78 HOH HOH . J 5 HOH B 45 1648 81 HOH HOH . J 5 HOH B 46 1649 82 HOH HOH . J 5 HOH B 47 1650 83 HOH HOH . J 5 HOH B 48 1651 84 HOH HOH . J 5 HOH B 49 1652 85 HOH HOH . J 5 HOH B 50 1653 86 HOH HOH . J 5 HOH B 51 1654 88 HOH HOH . J 5 HOH B 52 1655 89 HOH HOH . J 5 HOH B 53 1656 90 HOH HOH . J 5 HOH B 54 1657 91 HOH HOH . J 5 HOH B 55 1658 92 HOH HOH . J 5 HOH B 56 1659 93 HOH HOH . J 5 HOH B 57 1660 97 HOH HOH . J 5 HOH B 58 1661 98 HOH HOH . J 5 HOH B 59 1662 100 HOH HOH . J 5 HOH B 60 1663 101 HOH HOH . J 5 HOH B 61 1664 102 HOH HOH . J 5 HOH B 62 1665 108 HOH HOH . J 5 HOH B 63 1666 111 HOH HOH . J 5 HOH B 64 1667 121 HOH HOH . J 5 HOH B 65 1668 122 HOH HOH . J 5 HOH B 66 1669 125 HOH HOH . J 5 HOH B 67 1670 128 HOH HOH . J 5 HOH B 68 1671 130 HOH HOH . J 5 HOH B 69 1672 131 HOH HOH . J 5 HOH B 70 1673 133 HOH HOH . J 5 HOH B 71 1674 134 HOH HOH . J 5 HOH B 72 1675 137 HOH HOH . J 5 HOH B 73 1676 138 HOH HOH . J 5 HOH B 74 1677 139 HOH HOH . J 5 HOH B 75 1678 142 HOH HOH . J 5 HOH B 76 1679 143 HOH HOH . J 5 HOH B 77 1680 144 HOH HOH . J 5 HOH B 78 1681 145 HOH HOH . J 5 HOH B 79 1682 146 HOH HOH . J 5 HOH B 80 1683 147 HOH HOH . J 5 HOH B 81 1684 149 HOH HOH . J 5 HOH B 82 1685 150 HOH HOH . J 5 HOH B 83 1686 151 HOH HOH . J 5 HOH B 84 1687 157 HOH HOH . J 5 HOH B 85 1688 161 HOH HOH . J 5 HOH B 86 1689 165 HOH HOH . J 5 HOH B 87 1690 167 HOH HOH . J 5 HOH B 88 1691 173 HOH HOH . J 5 HOH B 89 1692 175 HOH HOH . J 5 HOH B 90 1693 176 HOH HOH . J 5 HOH B 91 1694 178 HOH HOH . J 5 HOH B 92 1695 179 HOH HOH . J 5 HOH B 93 1696 180 HOH HOH . J 5 HOH B 94 1697 181 HOH HOH . J 5 HOH B 95 1698 183 HOH HOH . J 5 HOH B 96 1699 184 HOH HOH . J 5 HOH B 97 1700 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GMP . . . H 4 1.939 15.205 37.633 1 35 ? O5' GMP 1602 B 1 HETATM 2 C C5' GMP . . . H 4 1.674 16.42 38.318 1 29.98 ? C5' GMP 1602 B 1 HETATM 3 C C4' GMP . . . H 4 1.379 17.55 37.331 1 29.03 ? C4' GMP 1602 B 1 HETATM 4 O O4' GMP . . . H 4 -0.06 17.688 37.096 1 25.26 ? O4' GMP 1602 B 1 HETATM 5 C C3' GMP . . . H 4 1.863 18.942 37.769 1 25.62 ? C3' GMP 1602 B 1 HETATM 6 O O3' GMP . . . H 4 2.309 19.702 36.67 1 23.59 ? O3' GMP 1602 B 1 HETATM 7 C C2' GMP . . . H 4 0.598 19.499 38.428 1 24.54 ? C2' GMP 1602 B 1 HETATM 8 O O2' GMP . . . H 4 0.547 20.899 38.581 1 24.58 ? O2' GMP 1602 B 1 HETATM 9 C C1' GMP . . . H 4 -0.465 18.999 37.458 1 23.09 ? C1' GMP 1602 B 1 HETATM 10 N N9 GMP . . . H 4 -1.818 18.974 38.046 1 20.5 ? N9 GMP 1602 B 1 HETATM 11 C C8 GMP . . . H 4 -2.275 18.239 39.118 1 19.7 ? C8 GMP 1602 B 1 HETATM 12 N N7 GMP . . . H 4 -3.541 18.435 39.387 1 17.01 ? N7 GMP 1602 B 1 HETATM 13 C C5 GMP . . . H 4 -3.935 19.361 38.44 1 15.66 ? C5 GMP 1602 B 1 HETATM 14 C C6 GMP . . . H 4 -5.192 19.965 38.23 1 15.28 ? C6 GMP 1602 B 1 HETATM 15 O O6 GMP . . . H 4 -6.245 19.803 38.859 1 16.79 ? O6 GMP 1602 B 1 HETATM 16 N N1 GMP . . . H 4 -5.187 20.849 37.164 1 15.76 ? N1 GMP 1602 B 1 HETATM 17 C C2 GMP . . . H 4 -4.116 21.126 36.368 1 16.76 ? C2 GMP 1602 B 1 HETATM 18 N N2 GMP . . . H 4 -4.344 22.015 35.385 1 12.4 ? N2 GMP 1602 B 1 HETATM 19 N N3 GMP . . . H 4 -2.899 20.585 36.572 1 19.45 ? N3 GMP 1602 B 1 HETATM 20 C C4 GMP . . . H 4 -2.901 19.699 37.611 1 18.07 ? C4 GMP 1602 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #