data_2ANB # _model_server_result.job_id 8X-E6uLJccny5ipUMdaDxg _model_server_result.datetime_utc '2024-11-08 15:06:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2anb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 2ANB # _exptl.entry_id 2ANB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ANB _cell.length_a 106.728 _cell.length_b 106.728 _cell.length_c 155.276 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ANB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4,5,6 A,B,C,D 2 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 106.728 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 53.364 92.429159 0 4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 53.364 -30.80972 103.517333 5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 61.61944 103.517333 6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 106.728 61.61944 103.517333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 2ANB _atom_sites.fract_transf_matrix[1][1] 0.00937 _atom_sites.fract_transf_matrix[1][2] 0.00541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 302 302 SO4 SO4 . C 3 5GP A 1 301 301 5GP 5GP . D 4 HOH A 1 303 1 HOH HOH . D 4 HOH A 2 304 2 HOH HOH . D 4 HOH A 3 305 3 HOH HOH . D 4 HOH A 4 306 4 HOH HOH . D 4 HOH A 5 307 5 HOH HOH . D 4 HOH A 6 308 6 HOH HOH . D 4 HOH A 7 309 7 HOH HOH . D 4 HOH A 8 310 8 HOH HOH . D 4 HOH A 9 311 9 HOH HOH . D 4 HOH A 10 312 10 HOH HOH . D 4 HOH A 11 313 11 HOH HOH . D 4 HOH A 12 314 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 3 37.14 17.021 75.763 1 28.13 ? P 5GP 301 A 1 HETATM 2 O O1P 5GP . . . C 3 37.575 18.287 76.378 1 27.88 ? O1P 5GP 301 A 1 HETATM 3 O O2P 5GP . . . C 3 36.937 16.001 76.815 1 27.35 ? O2P 5GP 301 A 1 HETATM 4 O O3P 5GP . . . C 3 38.155 16.574 74.784 1 28.98 ? O3P 5GP 301 A 1 HETATM 5 O O5' 5GP . . . C 3 35.767 17.267 74.962 1 28.51 ? O5' 5GP 301 A 1 HETATM 6 C C5' 5GP . . . C 3 35.097 16.159 74.4 1 28.55 ? C5' 5GP 301 A 1 HETATM 7 C C4' 5GP . . . C 3 33.909 16.598 73.543 1 28.39 ? C4' 5GP 301 A 1 HETATM 8 O O4' 5GP . . . C 3 33.099 17.52 74.254 1 27.33 ? O4' 5GP 301 A 1 HETATM 9 C C3' 5GP . . . C 3 34.348 17.268 72.247 1 28.23 ? C3' 5GP 301 A 1 HETATM 10 O O3' 5GP . . . C 3 33.659 16.747 71.129 1 28.44 ? O3' 5GP 301 A 1 HETATM 11 C C2' 5GP . . . C 3 33.983 18.719 72.444 1 28.09 ? C2' 5GP 301 A 1 HETATM 12 O O2' 5GP . . . C 3 33.622 19.286 71.203 1 28.85 ? O2' 5GP 301 A 1 HETATM 13 C C1' 5GP . . . C 3 32.847 18.676 73.475 1 27.25 ? C1' 5GP 301 A 1 HETATM 14 N N9 5GP . . . C 3 32.757 19.846 74.386 1 25.53 ? N9 5GP 301 A 1 HETATM 15 C C8 5GP . . . C 3 33.729 20.752 74.805 1 25.36 ? C8 5GP 301 A 1 HETATM 16 N N7 5GP . . . C 3 33.128 21.915 75.304 1 25.44 ? N7 5GP 301 A 1 HETATM 17 C C5 5GP . . . C 3 31.826 21.746 75.038 1 24.64 ? C5 5GP 301 A 1 HETATM 18 C C6 5GP . . . C 3 30.718 22.509 75.383 1 25.03 ? C6 5GP 301 A 1 HETATM 19 O O6 5GP . . . C 3 30.865 23.544 76.033 1 25.9 ? O6 5GP 301 A 1 HETATM 20 N N1 5GP . . . C 3 29.444 22.12 75.007 1 24.49 ? N1 5GP 301 A 1 HETATM 21 C C2 5GP . . . C 3 29.275 20.975 74.269 1 23.33 ? C2 5GP 301 A 1 HETATM 22 N N2 5GP . . . C 3 28.042 20.617 73.913 1 21.81 ? N2 5GP 301 A 1 HETATM 23 N N3 5GP . . . C 3 30.383 20.212 73.938 1 23.76 ? N3 5GP 301 A 1 HETATM 24 C C4 5GP . . . C 3 31.646 20.605 74.335 1 24.32 ? C4 5GP 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #