data_2ANT # _model_server_result.job_id e0IFBd4BvwA742y3akm7bg _model_server_result.datetime_utc '2024-12-02 23:36:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ant # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2ANT # _exptl.entry_id 2ANT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-allopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.32 _cell.angle_gamma 90 _cell.entry_id 2ANT _cell.length_a 61.41 _cell.length_b 98.31 _cell.length_c 90.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ANT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 L CYS 8 1_555 A SG CYS 128 L CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf2 A SG CYS 21 L CYS 21 1_555 A SG CYS 95 L CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 247 L CYS 247 1_555 A SG CYS 430 L CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 B SG CYS 8 I CYS 8 1_555 B SG CYS 128 I CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 B SG CYS 21 I CYS 21 1_555 B SG CYS 95 I CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 247 I CYS 247 1_555 B SG CYS 430 I CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A ND2 ASN 155 L ASN 155 1_555 C C1 NAA . L NAA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 B ND2 ASN 155 I ASN 155 1_555 D C1 NAA . I NAA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAA _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-allopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-allosamine;2-acetamido-2-deoxy-beta-D-allose;2-acetamido-2-deoxy-D-allose;2-acetamido-2-deoxy-allose;N-ACETYL-D-ALLOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAA DAllpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAA N-acetyl-b-D-allosamine 'COMMON NAME' GMML 1 NAA b-D-AllpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAA AllNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2ANT _atom_sites.fract_transf_matrix[1][1] 0.016284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003855 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAA L 1 500 500 NAA NAG . D 2 NAA I 1 500 500 NAA NAG . E 3 HOH L 1 501 1 HOH HOH . E 3 HOH L 2 502 3 HOH HOH . E 3 HOH L 3 503 6 HOH HOH . E 3 HOH L 4 504 7 HOH HOH . E 3 HOH L 5 505 8 HOH HOH . E 3 HOH L 6 506 11 HOH HOH . E 3 HOH L 7 507 12 HOH HOH . E 3 HOH L 8 508 14 HOH HOH . E 3 HOH L 9 509 15 HOH HOH . E 3 HOH L 10 510 16 HOH HOH . E 3 HOH L 11 511 22 HOH HOH . E 3 HOH L 12 512 23 HOH HOH . E 3 HOH L 13 513 25 HOH HOH . E 3 HOH L 14 514 26 HOH HOH . E 3 HOH L 15 515 27 HOH HOH . E 3 HOH L 16 516 28 HOH HOH . E 3 HOH L 17 517 29 HOH HOH . E 3 HOH L 18 518 35 HOH HOH . E 3 HOH L 19 519 37 HOH HOH . E 3 HOH L 20 520 38 HOH HOH . E 3 HOH L 21 521 40 HOH HOH . E 3 HOH L 22 522 41 HOH HOH . E 3 HOH L 23 523 45 HOH HOH . E 3 HOH L 24 524 47 HOH HOH . E 3 HOH L 25 525 48 HOH HOH . E 3 HOH L 26 526 51 HOH HOH . E 3 HOH L 27 527 52 HOH HOH . E 3 HOH L 28 528 54 HOH HOH . E 3 HOH L 29 529 63 HOH HOH . E 3 HOH L 30 530 64 HOH HOH . E 3 HOH L 31 531 65 HOH HOH . E 3 HOH L 32 532 68 HOH HOH . E 3 HOH L 33 533 69 HOH HOH . E 3 HOH L 34 534 72 HOH HOH . E 3 HOH L 35 535 74 HOH HOH . E 3 HOH L 36 536 76 HOH HOH . E 3 HOH L 37 537 79 HOH HOH . F 3 HOH I 1 501 2 HOH HOH . F 3 HOH I 2 502 4 HOH HOH . F 3 HOH I 3 503 5 HOH HOH . F 3 HOH I 4 504 9 HOH HOH . F 3 HOH I 5 505 10 HOH HOH . F 3 HOH I 6 506 13 HOH HOH . F 3 HOH I 7 507 17 HOH HOH . F 3 HOH I 8 508 18 HOH HOH . F 3 HOH I 9 509 19 HOH HOH . F 3 HOH I 10 510 20 HOH HOH . F 3 HOH I 11 511 21 HOH HOH . F 3 HOH I 12 512 24 HOH HOH . F 3 HOH I 13 513 30 HOH HOH . F 3 HOH I 14 514 31 HOH HOH . F 3 HOH I 15 515 32 HOH HOH . F 3 HOH I 16 516 33 HOH HOH . F 3 HOH I 17 517 34 HOH HOH . F 3 HOH I 18 518 36 HOH HOH . F 3 HOH I 19 519 39 HOH HOH . F 3 HOH I 20 520 42 HOH HOH . F 3 HOH I 21 521 43 HOH HOH . F 3 HOH I 22 522 44 HOH HOH . F 3 HOH I 23 523 46 HOH HOH . F 3 HOH I 24 524 49 HOH HOH . F 3 HOH I 25 525 50 HOH HOH . F 3 HOH I 26 526 53 HOH HOH . F 3 HOH I 27 527 55 HOH HOH . F 3 HOH I 28 528 56 HOH HOH . F 3 HOH I 29 529 57 HOH HOH . F 3 HOH I 30 530 58 HOH HOH . F 3 HOH I 31 531 59 HOH HOH . F 3 HOH I 32 532 60 HOH HOH . F 3 HOH I 33 533 61 HOH HOH . F 3 HOH I 34 534 62 HOH HOH . F 3 HOH I 35 535 66 HOH HOH . F 3 HOH I 36 536 67 HOH HOH . F 3 HOH I 37 537 70 HOH HOH . F 3 HOH I 38 538 71 HOH HOH . F 3 HOH I 39 539 73 HOH HOH . F 3 HOH I 40 540 75 HOH HOH . F 3 HOH I 41 541 77 HOH HOH . F 3 HOH I 42 542 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAA . . . D 2 -11.713 25.559 81.079 1 69.24 ? C1 NAA 500 I 1 HETATM 2 C C2 NAA . . . D 2 -11.976 26.844 80.327 1 64.54 ? C2 NAA 500 I 1 HETATM 3 C C3 NAA . . . D 2 -13.475 27.11 80.104 1 32.03 ? C3 NAA 500 I 1 HETATM 4 C C4 NAA . . . D 2 -14.39 26.223 80.947 1 70.09 ? C4 NAA 500 I 1 HETATM 5 C C5 NAA . . . D 2 -13.814 24.857 81.334 1 66.53 ? C5 NAA 500 I 1 HETATM 6 C C6 NAA . . . D 2 -14.89 23.791 81.408 1 54.34 ? C6 NAA 500 I 1 HETATM 7 C C7 NAA . . . D 2 -10.55 28.672 79.392 1 398.15 ? C7 NAA 500 I 1 HETATM 8 C C8 NAA . . . D 2 -10.668 27.795 78.157 1 111.03 ? C8 NAA 500 I 1 HETATM 9 N N2 NAA . . . D 2 -11.302 28.111 80.493 1 376.44 ? N2 NAA 500 I 1 HETATM 10 O O3 NAA . . . D 2 -13.895 28.44 79.774 1 364.72 ? O3 NAA 500 I 1 HETATM 11 O O4 NAA . . . D 2 -15.495 26.789 81.657 1 468.46 ? O4 NAA 500 I 1 HETATM 12 O O5 NAA . . . D 2 -12.552 24.445 80.837 1 114.8 ? O5 NAA 500 I 1 HETATM 13 O O6 NAA . . . D 2 -15.612 23.591 82.626 0 2 ? O6 NAA 500 I 1 HETATM 14 O O7 NAA . . . D 2 -9.5 29.265 79.63 1 61.51 ? O7 NAA 500 I 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #