data_2AOA # _model_server_result.job_id MZnXx2w1RK22-dSp4nQmhg _model_server_result.datetime_utc '2025-07-19 09:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aoa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 2AOA # _exptl.entry_id 2AOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 754.825 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9-(CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL)PHENYL)MALONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2AOA _cell.length_a 88.173 _cell.length_b 102.659 _cell.length_c 107.24 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C41 H46 N4 O10' _chem_comp.formula_weight 754.825 _chem_comp.id S1S _chem_comp.mon_nstd_flag . _chem_comp.name '2-(4-((9S,10S,14S,Z)-18-(2-AMINO-2-OXOETHYL)-9-(CARBOXYMETHYL)-14-(NAPHTHALEN-1-YLMETHYL)-8,17,20-TRIOXO-7,16,19-TRIAZASPIRO[5.14]ICOS-11-EN-10-YL)PHENYL)MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C40 S1S sing 315 n n O9 HO9 S1S sing 316 n n C40 O8 S1S doub 317 n n C40 C39 S1S sing 318 n n C39 C38 S1S sing 319 n n C39 H391 S1S sing 320 n n C39 H392 S1S sing 321 n n C38 C15 S1S sing 322 n n C38 C37 S1S sing 323 n n C38 H38 S1S sing 324 n n C15 C16 S1S sing 325 n n C15 C14 S1S sing 326 n n C15 H15 S1S sing 327 n n C16 C17 S1S sing 328 n y C16 C21 S1S doub 329 n y C17 C18 S1S doub 330 n y C17 H17 S1S sing 331 n n C18 C19 S1S sing 332 n y C18 H18 S1S sing 333 n n C19 C22 S1S sing 334 n n C19 C20 S1S doub 335 n y C22 C24 S1S sing 336 n n C22 C23 S1S sing 337 n n C22 H22 S1S sing 338 n n C24 O3 S1S doub 339 n n C24 O2 S1S sing 340 n n O2 HO2 S1S sing 341 n n C23 O1 S1S sing 342 n n C23 O S1S doub 343 n n O1 HO1 S1S sing 344 n n C20 C21 S1S sing 345 n y C20 H20 S1S sing 346 n n C21 H21 S1S sing 347 n n C14 C13 S1S doub 348 e n C14 H14 S1S sing 349 n n C13 C12 S1S sing 350 n n C13 H13 S1S sing 351 n n C12 C11 S1S sing 352 n n C12 H121 S1S sing 353 n n C12 H122 S1S sing 354 n n C37 O7 S1S doub 355 n n C37 N3 S1S sing 356 n n N3 C31 S1S sing 357 n n N3 HN3 S1S sing 358 n n C31 C32 S1S sing 359 n n C31 C36 S1S sing 360 n n C31 C30 S1S sing 361 n n C32 C33 S1S sing 362 n n C32 H321 S1S sing 363 n n C32 H322 S1S sing 364 n n C33 C34 S1S sing 365 n n C33 H331 S1S sing 366 n n C33 H332 S1S sing 367 n n C34 C35 S1S sing 368 n n C34 H341 S1S sing 369 n n C34 H342 S1S sing 370 n n C35 C36 S1S sing 371 n n C35 H351 S1S sing 372 n n C35 H352 S1S sing 373 n n C36 H361 S1S sing 374 n n C36 H362 S1S sing 375 n n C30 O6 S1S doub 376 n n C30 N2 S1S sing 377 n n N2 C27 S1S sing 378 n n N2 HN2 S1S sing 379 n n C27 C28 S1S sing 380 n n C27 C26 S1S sing 381 n n C27 H27 S1S sing 382 n n C28 C29 S1S sing 383 n n C28 H281 S1S sing 384 n n C28 H282 S1S sing 385 n n C29 N1 S1S sing 386 n n C29 O5 S1S doub 387 n n N1 HN11 S1S sing 388 n n N1 HN12 S1S sing 389 n n C26 O4 S1S doub 390 n n C26 N S1S sing 391 n n N C25 S1S sing 392 n n N HN S1S sing 393 n n C25 C11 S1S sing 394 n n C25 H251 S1S sing 395 n n C25 H252 S1S sing 396 n n C11 C10 S1S sing 397 n n C11 H11 S1S sing 398 n n C10 C S1S sing 399 n n C10 H101 S1S sing 400 n n C10 H102 S1S sing 401 n n C C1 S1S sing 402 n y C C8 S1S doub 403 n y C1 C2 S1S doub 404 n y C1 HC1 S1S sing 405 n n C2 C3 S1S sing 406 n y C2 HC2 S1S sing 407 n n C3 C9 S1S doub 408 n y C3 HC3 S1S sing 409 n n C9 C8 S1S sing 410 n y C9 C4 S1S sing 411 n y C8 C7 S1S sing 412 n y C7 C6 S1S doub 413 n y C7 HC7 S1S sing 414 n n C6 C5 S1S sing 415 n y C6 HC6 S1S sing 416 n n C5 C4 S1S doub 417 n y C5 HC5 S1S sing 418 n n C4 HC4 S1S sing 419 n n # _atom_sites.entry_id 2AOA _atom_sites.fract_transf_matrix[1][1] 0.011341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 S1S A 1 201 201 S1S S1S . D 2 S1S A 1 401 401 S1S S1S . E 2 S1S B 1 301 301 S1S S1S . F 3 P33 B 1 501 501 P33 2PE . G 4 HOH A 1 402 1 HOH WAT . G 4 HOH A 2 403 2 HOH WAT . G 4 HOH A 3 404 3 HOH WAT . G 4 HOH A 4 405 5 HOH WAT . G 4 HOH A 5 406 6 HOH WAT . G 4 HOH A 6 407 9 HOH WAT . G 4 HOH A 7 408 10 HOH WAT . G 4 HOH A 8 409 11 HOH WAT . G 4 HOH A 9 410 12 HOH WAT . G 4 HOH A 10 411 13 HOH WAT . G 4 HOH A 11 412 17 HOH WAT . G 4 HOH A 12 413 19 HOH WAT . G 4 HOH A 13 414 20 HOH WAT . G 4 HOH A 14 415 23 HOH WAT . G 4 HOH A 15 416 24 HOH WAT . G 4 HOH A 16 417 25 HOH WAT . G 4 HOH A 17 418 26 HOH WAT . G 4 HOH A 18 419 29 HOH WAT . G 4 HOH A 19 420 32 HOH WAT . G 4 HOH A 20 421 33 HOH WAT . G 4 HOH A 21 422 34 HOH WAT . G 4 HOH A 22 423 35 HOH WAT . G 4 HOH A 23 424 36 HOH WAT . G 4 HOH A 24 425 37 HOH WAT . G 4 HOH A 25 426 39 HOH WAT . G 4 HOH A 26 427 41 HOH WAT . G 4 HOH A 27 428 44 HOH WAT . G 4 HOH A 28 429 46 HOH WAT . G 4 HOH A 29 430 47 HOH WAT . G 4 HOH A 30 431 48 HOH WAT . G 4 HOH A 31 432 50 HOH WAT . G 4 HOH A 32 433 52 HOH WAT . G 4 HOH A 33 434 53 HOH WAT . G 4 HOH A 34 435 54 HOH WAT . G 4 HOH A 35 436 55 HOH WAT . G 4 HOH A 36 437 57 HOH WAT . G 4 HOH A 37 438 58 HOH WAT . G 4 HOH A 38 439 59 HOH WAT . G 4 HOH A 39 440 60 HOH WAT . G 4 HOH A 40 441 62 HOH WAT . G 4 HOH A 41 442 63 HOH WAT . G 4 HOH A 42 443 64 HOH WAT . G 4 HOH A 43 444 66 HOH WAT . G 4 HOH A 44 445 67 HOH WAT . G 4 HOH A 45 446 68 HOH WAT . G 4 HOH A 46 447 75 HOH WAT . G 4 HOH A 47 448 76 HOH WAT . G 4 HOH A 48 449 77 HOH WAT . G 4 HOH A 49 450 78 HOH WAT . G 4 HOH A 50 451 79 HOH WAT . G 4 HOH A 51 452 80 HOH WAT . G 4 HOH A 52 453 81 HOH WAT . G 4 HOH A 53 454 82 HOH WAT . G 4 HOH A 54 455 83 HOH WAT . G 4 HOH A 55 456 91 HOH WAT . G 4 HOH A 56 457 92 HOH WAT . G 4 HOH A 57 458 93 HOH WAT . G 4 HOH A 58 459 94 HOH WAT . G 4 HOH A 59 460 95 HOH WAT . G 4 HOH A 60 461 96 HOH WAT . G 4 HOH A 61 462 97 HOH WAT . G 4 HOH A 62 463 98 HOH WAT . G 4 HOH A 63 464 99 HOH WAT . G 4 HOH A 64 465 100 HOH WAT . G 4 HOH A 65 466 101 HOH WAT . G 4 HOH A 66 467 102 HOH WAT . G 4 HOH A 67 468 103 HOH WAT . H 4 HOH B 1 502 4 HOH WAT . H 4 HOH B 2 503 7 HOH WAT . H 4 HOH B 3 504 8 HOH WAT . H 4 HOH B 4 505 14 HOH WAT . H 4 HOH B 5 506 15 HOH WAT . H 4 HOH B 6 507 16 HOH WAT . H 4 HOH B 7 508 18 HOH WAT . H 4 HOH B 8 509 21 HOH WAT . H 4 HOH B 9 510 22 HOH WAT . H 4 HOH B 10 511 27 HOH WAT . H 4 HOH B 11 512 28 HOH WAT . H 4 HOH B 12 513 30 HOH WAT . H 4 HOH B 13 514 31 HOH WAT . H 4 HOH B 14 515 38 HOH WAT . H 4 HOH B 15 516 40 HOH WAT . H 4 HOH B 16 517 42 HOH WAT . H 4 HOH B 17 518 43 HOH WAT . H 4 HOH B 18 519 45 HOH WAT . H 4 HOH B 19 520 49 HOH WAT . H 4 HOH B 20 521 51 HOH WAT . H 4 HOH B 21 522 56 HOH WAT . H 4 HOH B 22 523 61 HOH WAT . H 4 HOH B 23 524 65 HOH WAT . H 4 HOH B 24 525 69 HOH WAT . H 4 HOH B 25 526 70 HOH WAT . H 4 HOH B 26 527 71 HOH WAT . H 4 HOH B 27 528 72 HOH WAT . H 4 HOH B 28 529 73 HOH WAT . H 4 HOH B 29 530 74 HOH WAT . H 4 HOH B 30 531 84 HOH WAT . H 4 HOH B 31 532 85 HOH WAT . H 4 HOH B 32 533 86 HOH WAT . H 4 HOH B 33 534 87 HOH WAT . H 4 HOH B 34 535 88 HOH WAT . H 4 HOH B 35 536 89 HOH WAT . H 4 HOH B 36 537 90 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 S1S . . . E 2 43.01 22.962 5.294 1 34.83 ? O9 S1S 301 B 1 HETATM 2 C C40 S1S . . . E 2 42.431 22.259 4.453 1 39.51 ? C40 S1S 301 B 1 HETATM 3 O O8 S1S . . . E 2 41.913 22.738 3.331 1 42.45 ? O8 S1S 301 B 1 HETATM 4 C C39 S1S . . . E 2 42.617 20.77 4.911 1 34.49 ? C39 S1S 301 B 1 HETATM 5 C C38 S1S . . . E 2 44.11 20.277 4.972 1 33.72 ? C38 S1S 301 B 1 HETATM 6 C C15 S1S . . . E 2 44.574 19.051 5.839 1 35.62 ? C15 S1S 301 B 1 HETATM 7 C C16 S1S . . . E 2 44.22 19.124 7.287 1 32.9 ? C16 S1S 301 B 1 HETATM 8 C C17 S1S . . . E 2 42.979 18.679 7.721 1 38.02 ? C17 S1S 301 B 1 HETATM 9 C C18 S1S . . . E 2 42.62 18.883 9.069 1 39.46 ? C18 S1S 301 B 1 HETATM 10 C C19 S1S . . . E 2 43.475 19.513 9.992 1 50.86 ? C19 S1S 301 B 1 HETATM 11 C C22 S1S . . . E 2 42.964 19.597 11.408 1 54.83 ? C22 S1S 301 B 1 HETATM 12 C C24 S1S . . . E 2 43.215 18.366 12.188 1 57.15 ? C24 S1S 301 B 1 HETATM 13 O O3 S1S . . . E 2 44.077 17.594 11.738 1 71.56 ? O3 S1S 301 B 1 HETATM 14 O O2 S1S . . . E 2 42.53 18.029 13.175 1 66.13 ? O2 S1S 301 B 1 HETATM 15 C C23 S1S . . . E 2 43.412 20.845 12.056 1 58.05 ? C23 S1S 301 B 1 HETATM 16 O O1 S1S . . . E 2 43.985 20.781 13.174 1 60.63 ? O1 S1S 301 B 1 HETATM 17 O O S1S . . . E 2 43.063 21.89 11.417 1 56.54 ? O S1S 301 B 1 HETATM 18 C C20 S1S . . . E 2 44.747 20.047 9.521 1 41.55 ? C20 S1S 301 B 1 HETATM 19 C C21 S1S . . . E 2 45.016 19.882 8.167 1 34.93 ? C21 S1S 301 B 1 HETATM 20 C C14 S1S . . . E 2 43.974 17.776 5.164 1 33.79 ? C14 S1S 301 B 1 HETATM 21 C C13 S1S . . . E 2 44.718 16.696 4.867 1 33.73 ? C13 S1S 301 B 1 HETATM 22 C C12 S1S . . . E 2 44.228 15.419 4.175 1 32 ? C12 S1S 301 B 1 HETATM 23 C C37 S1S . . . E 2 44.878 20.461 3.742 1 28.62 ? C37 S1S 301 B 1 HETATM 24 O O7 S1S . . . E 2 44.451 19.71 2.844 1 36.93 ? O7 S1S 301 B 1 HETATM 25 N N3 S1S . . . E 2 45.989 21.164 3.447 1 28.95 ? N3 S1S 301 B 1 HETATM 26 C C31 S1S . . . E 2 46.58 21.408 2.093 1 19.56 ? C31 S1S 301 B 1 HETATM 27 C C32 S1S . . . E 2 47.816 22.216 2.635 1 34.1 ? C32 S1S 301 B 1 HETATM 28 C C33 S1S . . . E 2 47.601 23.716 2.854 1 38.24 ? C33 S1S 301 B 1 HETATM 29 C C34 S1S . . . E 2 46.777 24.392 1.701 1 36.27 ? C34 S1S 301 B 1 HETATM 30 C C35 S1S . . . E 2 45.473 23.731 1.517 1 37.91 ? C35 S1S 301 B 1 HETATM 31 C C36 S1S . . . E 2 45.604 22.133 1.301 1 27.55 ? C36 S1S 301 B 1 HETATM 32 C C30 S1S . . . E 2 46.959 20.073 1.566 1 22.32 ? C30 S1S 301 B 1 HETATM 33 O O6 S1S . . . E 2 46.829 19.867 0.404 1 29.55 ? O6 S1S 301 B 1 HETATM 34 N N2 S1S . . . E 2 47.554 19.294 2.38 1 29.14 ? N2 S1S 301 B 1 HETATM 35 C C27 S1S . . . E 2 47.951 17.865 2.46 1 33.38 ? C27 S1S 301 B 1 HETATM 36 C C28 S1S . . . E 2 49.299 17.601 2.841 1 20.6 ? C28 S1S 301 B 1 HETATM 37 C C29 S1S . . . E 2 49.071 17.422 4.159 1 25.73 ? C29 S1S 301 B 1 HETATM 38 N N1 S1S . . . E 2 49.799 16.568 4.808 1 31.35 ? N1 S1S 301 B 1 HETATM 39 O O5 S1S . . . E 2 48.203 18.061 4.719 1 25.87 ? O5 S1S 301 B 1 HETATM 40 C C26 S1S . . . E 2 47.127 16.597 1.996 1 34.22 ? C26 S1S 301 B 1 HETATM 41 O O4 S1S . . . E 2 47.57 15.542 1.514 1 31.97 ? O4 S1S 301 B 1 HETATM 42 N N S1S . . . E 2 45.816 16.897 2.151 1 31.95 ? N S1S 301 B 1 HETATM 43 C C25 S1S . . . E 2 44.719 15.855 1.731 1 29.29 ? C25 S1S 301 B 1 HETATM 44 C C11 S1S . . . E 2 44.874 14.869 2.909 1 29.92 ? C11 S1S 301 B 1 HETATM 45 C C10 S1S . . . E 2 44.057 13.621 2.515 1 35.01 ? C10 S1S 301 B 1 HETATM 46 C C S1S . . . E 2 44.263 12.444 3.452 1 34.67 ? C S1S 301 B 1 HETATM 47 C C1 S1S . . . E 2 43.232 12.065 4.322 1 38.52 ? C1 S1S 301 B 1 HETATM 48 C C2 S1S . . . E 2 43.353 10.836 5.087 1 40.59 ? C2 S1S 301 B 1 HETATM 49 C C3 S1S . . . E 2 44.545 10.094 5.106 1 38.46 ? C3 S1S 301 B 1 HETATM 50 C C9 S1S . . . E 2 45.604 10.433 4.215 1 37.38 ? C9 S1S 301 B 1 HETATM 51 C C8 S1S . . . E 2 45.526 11.618 3.407 1 35.1 ? C8 S1S 301 B 1 HETATM 52 C C7 S1S . . . E 2 46.634 11.964 2.492 1 37.87 ? C7 S1S 301 B 1 HETATM 53 C C6 S1S . . . E 2 47.745 11.069 2.437 1 35.41 ? C6 S1S 301 B 1 HETATM 54 C C5 S1S . . . E 2 47.825 9.974 3.293 1 38.97 ? C5 S1S 301 B 1 HETATM 55 C C4 S1S . . . E 2 46.837 9.622 4.189 1 36.6 ? C4 S1S 301 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 55 #