data_2APF # _model_server_result.job_id VWx6N_q4v7o6h5BEUuTSng _model_server_result.datetime_utc '2024-11-17 06:27:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2apf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2APF # _exptl.entry_id 2APF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2APF _cell.length_a 31.608 _cell.length_b 74.708 _cell.length_c 113.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2APF _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 23 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 93 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.068 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 2APF _atom_sites.fract_transf_matrix[1][1] 0.031637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLA A 1 200 200 MLA MLA . C 3 HOH A 1 201 1 HOH HOH . C 3 HOH A 2 202 2 HOH HOH . C 3 HOH A 3 203 3 HOH HOH . C 3 HOH A 4 204 4 HOH HOH . C 3 HOH A 5 205 5 HOH HOH . C 3 HOH A 6 206 6 HOH HOH . C 3 HOH A 7 207 7 HOH HOH . C 3 HOH A 8 208 8 HOH HOH . C 3 HOH A 9 209 9 HOH HOH . C 3 HOH A 10 210 10 HOH HOH . C 3 HOH A 11 211 11 HOH HOH . C 3 HOH A 12 212 12 HOH HOH . C 3 HOH A 13 213 13 HOH HOH . C 3 HOH A 14 214 14 HOH HOH . C 3 HOH A 15 215 15 HOH HOH . C 3 HOH A 16 216 16 HOH HOH . C 3 HOH A 17 217 17 HOH HOH . C 3 HOH A 18 218 18 HOH HOH . C 3 HOH A 19 219 19 HOH HOH . C 3 HOH A 20 220 20 HOH HOH . C 3 HOH A 21 221 21 HOH HOH . C 3 HOH A 22 222 22 HOH HOH . C 3 HOH A 23 223 23 HOH HOH . C 3 HOH A 24 224 24 HOH HOH . C 3 HOH A 25 225 25 HOH HOH . C 3 HOH A 26 226 26 HOH HOH . C 3 HOH A 27 227 27 HOH HOH . C 3 HOH A 28 228 28 HOH HOH . C 3 HOH A 29 229 29 HOH HOH . C 3 HOH A 30 230 30 HOH HOH . C 3 HOH A 31 231 31 HOH HOH . C 3 HOH A 32 232 32 HOH HOH . C 3 HOH A 33 233 33 HOH HOH . C 3 HOH A 34 234 34 HOH HOH . C 3 HOH A 35 235 35 HOH HOH . C 3 HOH A 36 236 36 HOH HOH . C 3 HOH A 37 237 37 HOH HOH . C 3 HOH A 38 238 38 HOH HOH . C 3 HOH A 39 239 39 HOH HOH . C 3 HOH A 40 240 40 HOH HOH . C 3 HOH A 41 241 41 HOH HOH . C 3 HOH A 42 242 42 HOH HOH . C 3 HOH A 43 243 43 HOH HOH . C 3 HOH A 44 244 44 HOH HOH . C 3 HOH A 45 245 45 HOH HOH . C 3 HOH A 46 246 46 HOH HOH . C 3 HOH A 47 247 47 HOH HOH . C 3 HOH A 48 248 48 HOH HOH . C 3 HOH A 49 249 49 HOH HOH . C 3 HOH A 50 250 50 HOH HOH . C 3 HOH A 51 251 51 HOH HOH . C 3 HOH A 52 252 52 HOH HOH . C 3 HOH A 53 253 53 HOH HOH . C 3 HOH A 54 254 54 HOH HOH . C 3 HOH A 55 255 55 HOH HOH . C 3 HOH A 56 256 56 HOH HOH . C 3 HOH A 57 257 57 HOH HOH . C 3 HOH A 58 258 58 HOH HOH . C 3 HOH A 59 259 59 HOH HOH . C 3 HOH A 60 260 60 HOH HOH . C 3 HOH A 61 261 61 HOH HOH . C 3 HOH A 62 262 62 HOH HOH . C 3 HOH A 63 263 63 HOH HOH . C 3 HOH A 64 264 64 HOH HOH . C 3 HOH A 65 265 65 HOH HOH . C 3 HOH A 66 266 66 HOH HOH . C 3 HOH A 67 267 67 HOH HOH . C 3 HOH A 68 268 68 HOH HOH . C 3 HOH A 69 269 69 HOH HOH . C 3 HOH A 70 270 70 HOH HOH . C 3 HOH A 71 271 71 HOH HOH . C 3 HOH A 72 272 72 HOH HOH . C 3 HOH A 73 273 73 HOH HOH . C 3 HOH A 74 274 74 HOH HOH . C 3 HOH A 75 275 75 HOH HOH . C 3 HOH A 76 276 76 HOH HOH . C 3 HOH A 77 277 77 HOH HOH . C 3 HOH A 78 278 78 HOH HOH . C 3 HOH A 79 279 79 HOH HOH . C 3 HOH A 80 280 80 HOH HOH . C 3 HOH A 81 281 81 HOH HOH . C 3 HOH A 82 282 82 HOH HOH . C 3 HOH A 83 283 83 HOH HOH . C 3 HOH A 84 284 84 HOH HOH . C 3 HOH A 85 285 85 HOH HOH . C 3 HOH A 86 286 86 HOH HOH . C 3 HOH A 87 287 87 HOH HOH . C 3 HOH A 88 288 88 HOH HOH . C 3 HOH A 89 289 89 HOH HOH . C 3 HOH A 90 290 90 HOH HOH . C 3 HOH A 91 291 91 HOH HOH . C 3 HOH A 92 292 92 HOH HOH . C 3 HOH A 93 293 93 HOH HOH . C 3 HOH A 94 294 94 HOH HOH . C 3 HOH A 95 295 95 HOH HOH . C 3 HOH A 96 296 96 HOH HOH . C 3 HOH A 97 297 97 HOH HOH . C 3 HOH A 98 298 98 HOH HOH . C 3 HOH A 99 299 99 HOH HOH . C 3 HOH A 100 300 100 HOH HOH . C 3 HOH A 101 301 101 HOH HOH . C 3 HOH A 102 302 102 HOH HOH . C 3 HOH A 103 303 103 HOH HOH . C 3 HOH A 104 304 104 HOH HOH . C 3 HOH A 105 305 105 HOH HOH . C 3 HOH A 106 306 106 HOH HOH . C 3 HOH A 107 307 107 HOH HOH . C 3 HOH A 108 308 108 HOH HOH . C 3 HOH A 109 309 109 HOH HOH . C 3 HOH A 110 310 110 HOH HOH . C 3 HOH A 111 311 111 HOH HOH . C 3 HOH A 112 312 112 HOH HOH . C 3 HOH A 113 313 113 HOH HOH . C 3 HOH A 114 314 114 HOH HOH . C 3 HOH A 115 315 115 HOH HOH . C 3 HOH A 116 316 116 HOH HOH . C 3 HOH A 117 317 117 HOH HOH . C 3 HOH A 118 318 118 HOH HOH . C 3 HOH A 119 319 119 HOH HOH . C 3 HOH A 120 320 120 HOH HOH . C 3 HOH A 121 321 121 HOH HOH . C 3 HOH A 122 322 122 HOH HOH . C 3 HOH A 123 323 123 HOH HOH . C 3 HOH A 124 324 124 HOH HOH . C 3 HOH A 125 325 125 HOH HOH . C 3 HOH A 126 326 126 HOH HOH . C 3 HOH A 127 327 127 HOH HOH . C 3 HOH A 128 328 128 HOH HOH . C 3 HOH A 129 329 129 HOH HOH . C 3 HOH A 130 330 130 HOH HOH . C 3 HOH A 131 331 131 HOH HOH . C 3 HOH A 132 332 132 HOH HOH . C 3 HOH A 133 333 133 HOH HOH . C 3 HOH A 134 334 134 HOH HOH . C 3 HOH A 135 335 135 HOH HOH . C 3 HOH A 136 336 136 HOH HOH . C 3 HOH A 137 337 137 HOH HOH . C 3 HOH A 138 338 138 HOH HOH . C 3 HOH A 139 339 139 HOH HOH . C 3 HOH A 140 340 140 HOH HOH . C 3 HOH A 141 341 141 HOH HOH . C 3 HOH A 142 342 142 HOH HOH . C 3 HOH A 143 343 143 HOH HOH . C 3 HOH A 144 344 144 HOH HOH . C 3 HOH A 145 345 145 HOH HOH . C 3 HOH A 146 346 146 HOH HOH . C 3 HOH A 147 347 147 HOH HOH . C 3 HOH A 148 348 148 HOH HOH . C 3 HOH A 149 349 149 HOH HOH . C 3 HOH A 150 350 150 HOH HOH . C 3 HOH A 151 351 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . B 2 12.017 20.419 105.786 1 26.64 ? C1 MLA 200 A 1 HETATM 2 O O1A MLA . . . B 2 12.836 19.611 106.253 1 23.93 ? O1A MLA 200 A 1 HETATM 3 O O1B MLA . . . B 2 11.8 20.445 104.571 1 22.46 ? O1B MLA 200 A 1 HETATM 4 C C2 MLA . . . B 2 11.257 21.395 106.718 1 24.99 ? C2 MLA 200 A 1 HETATM 5 C C3 MLA . . . B 2 12.181 22.573 107.084 1 28.03 ? C3 MLA 200 A 1 HETATM 6 O O3A MLA . . . B 2 12.632 22.696 108.234 1 28.5 ? O3A MLA 200 A 1 HETATM 7 O O3B MLA . . . B 2 12.478 23.402 106.235 1 26.75 ? O3B MLA 200 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #