data_2APO # _model_server_result.job_id lxqJBcFT_NLVeppRgetYkw _model_server_result.datetime_utc '2024-12-27 01:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2apo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2APO # _exptl.entry_id 2APO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.62 _cell.angle_gamma 90 _cell.entry_id 2APO _cell.length_a 118.289 _cell.length_b 63.189 _cell.length_c 67.896 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2APO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 9 B CYS 409 1_555 B SG CYS 24 B CYS 424 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.962 ? covale ? covale1 B C GLU 3 B GLU 403 1_555 B N MSE 4 B MSE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B C MSE 4 B MSE 404 1_555 B N ARG 5 B ARG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C ARG 5 B ARG 405 1_555 B N MSE 6 B MSE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C MSE 6 B MSE 406 1_555 B N LYS 7 B LYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 B C ARG 47 B ARG 447 1_555 B N MSE 48 B MSE 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 48 B MSE 448 1_555 B N LEU 49 B LEU 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A N GLY 99 A GLY 78 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc2 A N LYS 186 A LYS 165 1_555 C K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc3 A NZ LYS 186 A LYS 165 1_555 C K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.348 ? metalc ? metalc4 A N LYS 186 A LYS 165 2_557 C K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc5 A NZ LYS 186 A LYS 165 2_557 C K K . A K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.347 ? metalc ? metalc6 A OG SER 225 A SER 204 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc7 C K K . A K 502 1_555 F O HOH . A HOH 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? metalc ? metalc8 C K K . A K 502 1_555 F O HOH . A HOH 692 2_557 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? metalc ? metalc9 D K K . A K 503 1_555 F O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc10 B SG CYS 9 B CYS 409 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc11 B SG CYS 12 B CYS 412 1_555 E ZN ZN . B ZN 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc12 B SG CYS 12 B CYS 412 1_555 E ZN ZN . B ZN 501 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc13 B SG CYS 21 B CYS 421 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc14 B SG CYS 24 B CYS 424 1_555 E ZN ZN . B ZN 501 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2APO _atom_sites.fract_transf_matrix[1][1] 0.008454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 502 502 K K1 . D 3 K A 1 503 503 K K1 . E 4 ZN B 1 501 501 ZN ZN2 . F 5 HOH A 1 601 601 HOH HOH . F 5 HOH A 2 602 602 HOH HOH . F 5 HOH A 3 603 603 HOH HOH . F 5 HOH A 4 604 604 HOH HOH . F 5 HOH A 5 605 605 HOH HOH . F 5 HOH A 6 606 606 HOH HOH . F 5 HOH A 7 607 607 HOH HOH . F 5 HOH A 8 608 608 HOH HOH . F 5 HOH A 9 609 609 HOH HOH . F 5 HOH A 10 610 610 HOH HOH . F 5 HOH A 11 611 611 HOH HOH . F 5 HOH A 12 612 612 HOH HOH . F 5 HOH A 13 613 613 HOH HOH . F 5 HOH A 14 614 614 HOH HOH . F 5 HOH A 15 615 615 HOH HOH . F 5 HOH A 16 616 616 HOH HOH . F 5 HOH A 17 617 617 HOH HOH . F 5 HOH A 18 618 618 HOH HOH . F 5 HOH A 19 620 620 HOH HOH . F 5 HOH A 20 621 621 HOH HOH . F 5 HOH A 21 623 623 HOH HOH . F 5 HOH A 22 624 624 HOH HOH . F 5 HOH A 23 625 625 HOH HOH . F 5 HOH A 24 627 627 HOH HOH . F 5 HOH A 25 628 628 HOH HOH . F 5 HOH A 26 629 629 HOH HOH . F 5 HOH A 27 630 630 HOH HOH . F 5 HOH A 28 631 631 HOH HOH . F 5 HOH A 29 632 632 HOH HOH . F 5 HOH A 30 633 633 HOH HOH . F 5 HOH A 31 634 634 HOH HOH . F 5 HOH A 32 635 635 HOH HOH . F 5 HOH A 33 636 636 HOH HOH . F 5 HOH A 34 637 637 HOH HOH . F 5 HOH A 35 638 638 HOH HOH . F 5 HOH A 36 639 639 HOH HOH . F 5 HOH A 37 640 640 HOH HOH . F 5 HOH A 38 641 641 HOH HOH . F 5 HOH A 39 642 642 HOH HOH . F 5 HOH A 40 643 643 HOH HOH . F 5 HOH A 41 644 644 HOH HOH . F 5 HOH A 42 645 645 HOH HOH . F 5 HOH A 43 646 646 HOH HOH . F 5 HOH A 44 648 648 HOH HOH . F 5 HOH A 45 649 649 HOH HOH . F 5 HOH A 46 650 650 HOH HOH . F 5 HOH A 47 651 651 HOH HOH . F 5 HOH A 48 652 652 HOH HOH . F 5 HOH A 49 653 653 HOH HOH . F 5 HOH A 50 654 654 HOH HOH . F 5 HOH A 51 656 656 HOH HOH . F 5 HOH A 52 657 657 HOH HOH . F 5 HOH A 53 658 658 HOH HOH . F 5 HOH A 54 659 659 HOH HOH . F 5 HOH A 55 661 661 HOH HOH . F 5 HOH A 56 662 662 HOH HOH . F 5 HOH A 57 663 663 HOH HOH . F 5 HOH A 58 664 664 HOH HOH . F 5 HOH A 59 665 665 HOH HOH . F 5 HOH A 60 666 666 HOH HOH . F 5 HOH A 61 667 667 HOH HOH . F 5 HOH A 62 668 668 HOH HOH . F 5 HOH A 63 669 669 HOH HOH . F 5 HOH A 64 670 670 HOH HOH . F 5 HOH A 65 671 671 HOH HOH . F 5 HOH A 66 672 672 HOH HOH . F 5 HOH A 67 674 674 HOH HOH . F 5 HOH A 68 675 675 HOH HOH . F 5 HOH A 69 676 676 HOH HOH . F 5 HOH A 70 677 677 HOH HOH . F 5 HOH A 71 678 678 HOH HOH . F 5 HOH A 72 679 679 HOH HOH . F 5 HOH A 73 680 680 HOH HOH . F 5 HOH A 74 681 681 HOH HOH . F 5 HOH A 75 683 683 HOH HOH . F 5 HOH A 76 684 684 HOH HOH . F 5 HOH A 77 685 685 HOH HOH . F 5 HOH A 78 686 686 HOH HOH . F 5 HOH A 79 687 687 HOH HOH . F 5 HOH A 80 689 689 HOH HOH . F 5 HOH A 81 690 690 HOH HOH . F 5 HOH A 82 691 691 HOH HOH . F 5 HOH A 83 692 692 HOH HOH . F 5 HOH A 84 694 694 HOH HOH . F 5 HOH A 85 695 695 HOH HOH . F 5 HOH A 86 696 696 HOH HOH . F 5 HOH A 87 697 697 HOH HOH . F 5 HOH A 88 698 698 HOH HOH . F 5 HOH A 89 700 700 HOH HOH . F 5 HOH A 90 702 702 HOH HOH . F 5 HOH A 91 703 703 HOH HOH . F 5 HOH A 92 704 704 HOH HOH . F 5 HOH A 93 705 705 HOH HOH . F 5 HOH A 94 706 706 HOH HOH . F 5 HOH A 95 707 707 HOH HOH . F 5 HOH A 96 708 708 HOH HOH . F 5 HOH A 97 711 711 HOH HOH . F 5 HOH A 98 712 712 HOH HOH . F 5 HOH A 99 714 714 HOH HOH . F 5 HOH A 100 715 715 HOH HOH . F 5 HOH A 101 716 716 HOH HOH . F 5 HOH A 102 717 717 HOH HOH . F 5 HOH A 103 718 718 HOH HOH . F 5 HOH A 104 719 719 HOH HOH . F 5 HOH A 105 720 720 HOH HOH . F 5 HOH A 106 721 721 HOH HOH . F 5 HOH A 107 722 722 HOH HOH . F 5 HOH A 108 723 723 HOH HOH . F 5 HOH A 109 724 724 HOH HOH . F 5 HOH A 110 725 725 HOH HOH . F 5 HOH A 111 726 726 HOH HOH . F 5 HOH A 112 727 727 HOH HOH . F 5 HOH A 113 728 728 HOH HOH . F 5 HOH A 114 729 729 HOH HOH . F 5 HOH A 115 730 730 HOH HOH . F 5 HOH A 116 731 731 HOH HOH . F 5 HOH A 117 732 732 HOH HOH . F 5 HOH A 118 733 733 HOH HOH . F 5 HOH A 119 734 734 HOH HOH . F 5 HOH A 120 735 735 HOH HOH . F 5 HOH A 121 736 736 HOH HOH . F 5 HOH A 122 737 737 HOH HOH . F 5 HOH A 123 738 738 HOH HOH . F 5 HOH A 124 739 739 HOH HOH . F 5 HOH A 125 740 740 HOH HOH . F 5 HOH A 126 741 741 HOH HOH . F 5 HOH A 127 742 742 HOH HOH . F 5 HOH A 128 743 743 HOH HOH . F 5 HOH A 129 744 744 HOH HOH . F 5 HOH A 130 745 745 HOH HOH . F 5 HOH A 131 746 746 HOH HOH . F 5 HOH A 132 747 747 HOH HOH . F 5 HOH A 133 748 748 HOH HOH . F 5 HOH A 134 749 749 HOH HOH . F 5 HOH A 135 750 750 HOH HOH . F 5 HOH A 136 751 751 HOH HOH . F 5 HOH A 137 752 752 HOH HOH . F 5 HOH A 138 753 753 HOH HOH . F 5 HOH A 139 754 754 HOH HOH . F 5 HOH A 140 755 755 HOH HOH . F 5 HOH A 141 756 756 HOH HOH . F 5 HOH A 142 757 757 HOH HOH . F 5 HOH A 143 758 758 HOH HOH . F 5 HOH A 144 759 759 HOH HOH . F 5 HOH A 145 760 760 HOH HOH . F 5 HOH A 146 761 761 HOH HOH . F 5 HOH A 147 762 762 HOH HOH . F 5 HOH A 148 765 765 HOH HOH . F 5 HOH A 149 766 766 HOH HOH . F 5 HOH A 150 767 767 HOH HOH . F 5 HOH A 151 768 768 HOH HOH . F 5 HOH A 152 769 769 HOH HOH . F 5 HOH A 153 770 770 HOH HOH . F 5 HOH A 154 772 772 HOH HOH . F 5 HOH A 155 773 773 HOH HOH . F 5 HOH A 156 774 774 HOH HOH . F 5 HOH A 157 775 775 HOH HOH . G 5 HOH B 1 619 619 HOH HOH . G 5 HOH B 2 622 622 HOH HOH . G 5 HOH B 3 626 626 HOH HOH . G 5 HOH B 4 647 647 HOH HOH . G 5 HOH B 5 655 655 HOH HOH . G 5 HOH B 6 660 660 HOH HOH . G 5 HOH B 7 673 673 HOH HOH . G 5 HOH B 8 682 682 HOH HOH . G 5 HOH B 9 688 688 HOH HOH . G 5 HOH B 10 693 693 HOH HOH . G 5 HOH B 11 699 699 HOH HOH . G 5 HOH B 12 701 701 HOH HOH . G 5 HOH B 13 709 709 HOH HOH . G 5 HOH B 14 710 710 HOH HOH . G 5 HOH B 15 713 713 HOH HOH . G 5 HOH B 16 763 763 HOH HOH . G 5 HOH B 17 764 764 HOH HOH . G 5 HOH B 18 771 771 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -5.236 _atom_site.Cartn_y 40.918 _atom_site.Cartn_z 44.592 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #