data_2APT
#
_model_server_result.job_id            '_fzgLfrrRHVvmpAtpEPA3Q' 
_model_server_result.datetime_utc      '2024-11-17 08:35:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2apt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":200}' 
#
_entry.id    2APT 
#
_exptl.entry_id    2APT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.17 
_cell.angle_gamma         90 
_cell.entry_id            2APT 
_cell.length_a            79.423 
_cell.length_b            116.295 
_cell.length_c            34.769 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2APT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,C,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 23 1_555 A SG CYS 93 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
disulf ? disulf2 B SG CYS 25 B CYS 23 1_555 B SG CYS 93 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 237 n n 
C1 O1B MLA doub 238 n n 
C1 C2 MLA sing 239 n n 
O1A H1A MLA sing 240 n n 
C2 C3 MLA sing 241 n n 
C2 HC21 MLA sing 242 n n 
C2 HC22 MLA sing 243 n n 
C3 O3A MLA doub 244 n n 
C3 O3B MLA sing 245 n n 
O3B H3B MLA sing 246 n n 
#
_atom_sites.entry_id                     2APT 
_atom_sites.fract_transf_matrix[1][1]    0.01259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00463 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLA B 1 200 200 MLA MLA . 
D 3 HOH A 1 118 3 HOH HOH . 
D 3 HOH A 2 119 4 HOH HOH . 
D 3 HOH A 3 120 5 HOH HOH . 
D 3 HOH A 4 121 8 HOH HOH . 
D 3 HOH A 5 122 9 HOH HOH . 
D 3 HOH A 6 123 10 HOH HOH . 
D 3 HOH A 7 124 11 HOH HOH . 
D 3 HOH A 8 125 13 HOH HOH . 
D 3 HOH A 9 126 15 HOH HOH . 
D 3 HOH A 10 127 16 HOH HOH . 
D 3 HOH A 11 128 17 HOH HOH . 
D 3 HOH A 12 129 19 HOH HOH . 
D 3 HOH A 13 130 20 HOH HOH . 
D 3 HOH A 14 131 21 HOH HOH . 
D 3 HOH A 15 132 22 HOH HOH . 
D 3 HOH A 16 133 28 HOH HOH . 
D 3 HOH A 17 134 29 HOH HOH . 
D 3 HOH A 18 135 30 HOH HOH . 
D 3 HOH A 19 136 33 HOH HOH . 
D 3 HOH A 20 137 35 HOH HOH . 
D 3 HOH A 21 138 36 HOH HOH . 
D 3 HOH A 22 139 38 HOH HOH . 
D 3 HOH A 23 140 41 HOH HOH . 
D 3 HOH A 24 141 44 HOH HOH . 
D 3 HOH A 25 142 45 HOH HOH . 
D 3 HOH A 26 143 46 HOH HOH . 
D 3 HOH A 27 144 47 HOH HOH . 
D 3 HOH A 28 145 48 HOH HOH . 
D 3 HOH A 29 146 49 HOH HOH . 
D 3 HOH A 30 147 54 HOH HOH . 
D 3 HOH A 31 148 57 HOH HOH . 
D 3 HOH A 32 149 58 HOH HOH . 
D 3 HOH A 33 150 59 HOH HOH . 
D 3 HOH A 34 151 60 HOH HOH . 
D 3 HOH A 35 152 63 HOH HOH . 
D 3 HOH A 36 153 65 HOH HOH . 
D 3 HOH A 37 154 69 HOH HOH . 
D 3 HOH A 38 155 71 HOH HOH . 
D 3 HOH A 39 156 72 HOH HOH . 
D 3 HOH A 40 157 73 HOH HOH . 
D 3 HOH A 41 158 74 HOH HOH . 
D 3 HOH A 42 159 76 HOH HOH . 
D 3 HOH A 43 160 79 HOH HOH . 
D 3 HOH A 44 161 84 HOH HOH . 
D 3 HOH A 45 162 89 HOH HOH . 
D 3 HOH A 46 163 90 HOH HOH . 
D 3 HOH A 47 164 92 HOH HOH . 
D 3 HOH A 48 165 93 HOH HOH . 
D 3 HOH A 49 166 94 HOH HOH . 
D 3 HOH A 50 167 95 HOH HOH . 
E 3 HOH B 1 201 1 HOH HOH . 
E 3 HOH B 2 202 2 HOH HOH . 
E 3 HOH B 3 203 6 HOH HOH . 
E 3 HOH B 4 204 7 HOH HOH . 
E 3 HOH B 5 205 12 HOH HOH . 
E 3 HOH B 6 206 14 HOH HOH . 
E 3 HOH B 7 207 18 HOH HOH . 
E 3 HOH B 8 208 23 HOH HOH . 
E 3 HOH B 9 209 24 HOH HOH . 
E 3 HOH B 10 210 25 HOH HOH . 
E 3 HOH B 11 211 26 HOH HOH . 
E 3 HOH B 12 212 27 HOH HOH . 
E 3 HOH B 13 213 31 HOH HOH . 
E 3 HOH B 14 214 32 HOH HOH . 
E 3 HOH B 15 215 34 HOH HOH . 
E 3 HOH B 16 216 37 HOH HOH . 
E 3 HOH B 17 217 39 HOH HOH . 
E 3 HOH B 18 218 40 HOH HOH . 
E 3 HOH B 19 219 42 HOH HOH . 
E 3 HOH B 20 220 43 HOH HOH . 
E 3 HOH B 21 221 50 HOH HOH . 
E 3 HOH B 22 222 51 HOH HOH . 
E 3 HOH B 23 223 52 HOH HOH . 
E 3 HOH B 24 224 53 HOH HOH . 
E 3 HOH B 25 225 55 HOH HOH . 
E 3 HOH B 26 226 56 HOH HOH . 
E 3 HOH B 27 227 61 HOH HOH . 
E 3 HOH B 28 228 62 HOH HOH . 
E 3 HOH B 29 229 64 HOH HOH . 
E 3 HOH B 30 230 66 HOH HOH . 
E 3 HOH B 31 231 67 HOH HOH . 
E 3 HOH B 32 232 68 HOH HOH . 
E 3 HOH B 33 233 70 HOH HOH . 
E 3 HOH B 34 234 75 HOH HOH . 
E 3 HOH B 35 235 77 HOH HOH . 
E 3 HOH B 36 236 78 HOH HOH . 
E 3 HOH B 37 237 80 HOH HOH . 
E 3 HOH B 38 238 81 HOH HOH . 
E 3 HOH B 39 239 82 HOH HOH . 
E 3 HOH B 40 240 83 HOH HOH . 
E 3 HOH B 41 241 85 HOH HOH . 
E 3 HOH B 42 242 86 HOH HOH . 
E 3 HOH B 43 243 87 HOH HOH . 
E 3 HOH B 44 244 88 HOH HOH . 
E 3 HOH B 45 245 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . C 2 16.063 43.017 12.514 1 80.86 ? C1 MLA 200 B 1 
HETATM 2 O O1A MLA . . . C 2 16.911 42.137 12.34 1 80.43 ? O1A MLA 200 B 1 
HETATM 3 O O1B MLA . . . C 2 15.807 43.768 11.578 1 80.75 ? O1B MLA 200 B 1 
HETATM 4 C C2 MLA . . . C 2 15.338 43.175 13.861 1 80.42 ? C2 MLA 200 B 1 
HETATM 5 C C3 MLA . . . C 2 14.589 44.52 13.902 1 80.36 ? C3 MLA 200 B 1 
HETATM 6 O O3A MLA . . . C 2 14.986 45.441 14.612 1 79.81 ? O3A MLA 200 B 1 
HETATM 7 O O3B MLA . . . C 2 13.566 44.689 13.24 1 81.7 ? O3B MLA 200 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           212 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           7 
#