data_2APX # _model_server_result.job_id Oi69LqTxlGkwEPmisAnECg _model_server_result.datetime_utc '2024-11-30 08:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2apx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2APX # _exptl.entry_id 2APX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2APX _cell.length_a 32.528 _cell.length_b 74.575 _cell.length_c 113.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2APX _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 25 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 23 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 93 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.076 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 2APX _atom_sites.fract_transf_matrix[1][1] 0.03074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLA A 1 300 300 MLA MLA . C 2 MLA A 1 301 301 MLA MLA . D 3 HOH A 1 302 1 HOH HOH . D 3 HOH A 2 303 2 HOH HOH . D 3 HOH A 3 304 3 HOH HOH . D 3 HOH A 4 305 4 HOH HOH . D 3 HOH A 5 306 5 HOH HOH . D 3 HOH A 6 307 6 HOH HOH . D 3 HOH A 7 308 7 HOH HOH . D 3 HOH A 8 309 8 HOH HOH . D 3 HOH A 9 310 9 HOH HOH . D 3 HOH A 10 311 10 HOH HOH . D 3 HOH A 11 312 11 HOH HOH . D 3 HOH A 12 313 12 HOH HOH . D 3 HOH A 13 314 13 HOH HOH . D 3 HOH A 14 315 14 HOH HOH . D 3 HOH A 15 316 15 HOH HOH . D 3 HOH A 16 317 16 HOH HOH . D 3 HOH A 17 318 17 HOH HOH . D 3 HOH A 18 319 18 HOH HOH . D 3 HOH A 19 320 19 HOH HOH . D 3 HOH A 20 321 20 HOH HOH . D 3 HOH A 21 322 21 HOH HOH . D 3 HOH A 22 323 22 HOH HOH . D 3 HOH A 23 324 23 HOH HOH . D 3 HOH A 24 325 24 HOH HOH . D 3 HOH A 25 326 25 HOH HOH . D 3 HOH A 26 327 26 HOH HOH . D 3 HOH A 27 328 27 HOH HOH . D 3 HOH A 28 329 28 HOH HOH . D 3 HOH A 29 330 29 HOH HOH . D 3 HOH A 30 331 30 HOH HOH . D 3 HOH A 31 332 31 HOH HOH . D 3 HOH A 32 333 32 HOH HOH . D 3 HOH A 33 334 33 HOH HOH . D 3 HOH A 34 335 34 HOH HOH . D 3 HOH A 35 336 35 HOH HOH . D 3 HOH A 36 337 36 HOH HOH . D 3 HOH A 37 338 37 HOH HOH . D 3 HOH A 38 339 38 HOH HOH . D 3 HOH A 39 340 39 HOH HOH . D 3 HOH A 40 341 40 HOH HOH . D 3 HOH A 41 342 41 HOH HOH . D 3 HOH A 42 343 42 HOH HOH . D 3 HOH A 43 344 43 HOH HOH . D 3 HOH A 44 345 44 HOH HOH . D 3 HOH A 45 346 45 HOH HOH . D 3 HOH A 46 347 46 HOH HOH . D 3 HOH A 47 348 47 HOH HOH . D 3 HOH A 48 349 48 HOH HOH . D 3 HOH A 49 350 49 HOH HOH . D 3 HOH A 50 351 50 HOH HOH . D 3 HOH A 51 352 51 HOH HOH . D 3 HOH A 52 353 52 HOH HOH . D 3 HOH A 53 354 53 HOH HOH . D 3 HOH A 54 355 54 HOH HOH . D 3 HOH A 55 356 55 HOH HOH . D 3 HOH A 56 357 56 HOH HOH . D 3 HOH A 57 358 57 HOH HOH . D 3 HOH A 58 359 58 HOH HOH . D 3 HOH A 59 360 59 HOH HOH . D 3 HOH A 60 361 60 HOH HOH . D 3 HOH A 61 362 61 HOH HOH . D 3 HOH A 62 363 62 HOH HOH . D 3 HOH A 63 364 63 HOH HOH . D 3 HOH A 64 365 64 HOH HOH . D 3 HOH A 65 366 65 HOH HOH . D 3 HOH A 66 367 66 HOH HOH . D 3 HOH A 67 368 67 HOH HOH . D 3 HOH A 68 369 68 HOH HOH . D 3 HOH A 69 370 69 HOH HOH . D 3 HOH A 70 371 70 HOH HOH . D 3 HOH A 71 372 71 HOH HOH . D 3 HOH A 72 373 72 HOH HOH . D 3 HOH A 73 374 73 HOH HOH . D 3 HOH A 74 375 74 HOH HOH . D 3 HOH A 75 376 75 HOH HOH . D 3 HOH A 76 377 76 HOH HOH . D 3 HOH A 77 378 77 HOH HOH . D 3 HOH A 78 379 78 HOH HOH . D 3 HOH A 79 380 79 HOH HOH . D 3 HOH A 80 381 80 HOH HOH . D 3 HOH A 81 382 81 HOH HOH . D 3 HOH A 82 383 82 HOH HOH . D 3 HOH A 83 384 83 HOH HOH . D 3 HOH A 84 385 84 HOH HOH . D 3 HOH A 85 386 85 HOH HOH . D 3 HOH A 86 387 86 HOH HOH . D 3 HOH A 87 388 87 HOH HOH . D 3 HOH A 88 389 88 HOH HOH . D 3 HOH A 89 390 89 HOH HOH . D 3 HOH A 90 391 90 HOH HOH . D 3 HOH A 91 392 91 HOH HOH . D 3 HOH A 92 393 92 HOH HOH . D 3 HOH A 93 394 93 HOH HOH . D 3 HOH A 94 395 94 HOH HOH . D 3 HOH A 95 396 95 HOH HOH . D 3 HOH A 96 397 96 HOH HOH . D 3 HOH A 97 398 97 HOH HOH . D 3 HOH A 98 399 98 HOH HOH . D 3 HOH A 99 400 99 HOH HOH . D 3 HOH A 100 401 100 HOH HOH . D 3 HOH A 101 402 101 HOH HOH . D 3 HOH A 102 403 102 HOH HOH . D 3 HOH A 103 404 103 HOH HOH . D 3 HOH A 104 405 104 HOH HOH . D 3 HOH A 105 406 105 HOH HOH . D 3 HOH A 106 407 106 HOH HOH . D 3 HOH A 107 408 107 HOH HOH . D 3 HOH A 108 409 108 HOH HOH . D 3 HOH A 109 410 109 HOH HOH . D 3 HOH A 110 411 110 HOH HOH . D 3 HOH A 111 412 111 HOH HOH . D 3 HOH A 112 413 112 HOH HOH . D 3 HOH A 113 414 113 HOH HOH . D 3 HOH A 114 415 114 HOH HOH . D 3 HOH A 115 416 115 HOH HOH . D 3 HOH A 116 417 116 HOH HOH . D 3 HOH A 117 418 117 HOH HOH . D 3 HOH A 118 419 118 HOH HOH . D 3 HOH A 119 420 119 HOH HOH . D 3 HOH A 120 421 120 HOH HOH . D 3 HOH A 121 422 121 HOH HOH . D 3 HOH A 122 423 122 HOH HOH . D 3 HOH A 123 424 123 HOH HOH . D 3 HOH A 124 425 124 HOH HOH . D 3 HOH A 125 426 125 HOH HOH . D 3 HOH A 126 427 126 HOH HOH . D 3 HOH A 127 428 127 HOH HOH . D 3 HOH A 128 429 128 HOH HOH . D 3 HOH A 129 430 129 HOH HOH . D 3 HOH A 130 431 130 HOH HOH . D 3 HOH A 131 432 131 HOH HOH . D 3 HOH A 132 433 132 HOH HOH . D 3 HOH A 133 434 133 HOH HOH . D 3 HOH A 134 435 134 HOH HOH . D 3 HOH A 135 436 135 HOH HOH . D 3 HOH A 136 437 136 HOH HOH . D 3 HOH A 137 438 137 HOH HOH . D 3 HOH A 138 439 138 HOH HOH . D 3 HOH A 139 440 139 HOH HOH . D 3 HOH A 140 441 140 HOH HOH . D 3 HOH A 141 442 141 HOH HOH . D 3 HOH A 142 443 142 HOH HOH . D 3 HOH A 143 444 143 HOH HOH . D 3 HOH A 144 445 144 HOH HOH . D 3 HOH A 145 446 145 HOH HOH . D 3 HOH A 146 447 146 HOH HOH . D 3 HOH A 147 448 147 HOH HOH . D 3 HOH A 148 449 148 HOH HOH . D 3 HOH A 149 450 149 HOH HOH . D 3 HOH A 150 451 150 HOH HOH . D 3 HOH A 151 452 151 HOH HOH . D 3 HOH A 152 453 152 HOH HOH . D 3 HOH A 153 454 153 HOH HOH . D 3 HOH A 154 455 154 HOH HOH . D 3 HOH A 155 456 155 HOH HOH . D 3 HOH A 156 457 156 HOH HOH . D 3 HOH A 157 458 157 HOH HOH . D 3 HOH A 158 459 158 HOH HOH . D 3 HOH A 159 460 159 HOH HOH . D 3 HOH A 160 461 160 HOH HOH . D 3 HOH A 161 462 161 HOH HOH . D 3 HOH A 162 463 162 HOH HOH . D 3 HOH A 163 464 163 HOH HOH . D 3 HOH A 164 465 164 HOH HOH . D 3 HOH A 165 466 165 HOH HOH . D 3 HOH A 166 467 166 HOH HOH . D 3 HOH A 167 468 167 HOH HOH . D 3 HOH A 168 469 168 HOH HOH . D 3 HOH A 169 470 169 HOH HOH . D 3 HOH A 170 471 170 HOH HOH . D 3 HOH A 171 472 171 HOH HOH . D 3 HOH A 172 473 172 HOH HOH . D 3 HOH A 173 474 173 HOH HOH . D 3 HOH A 174 475 174 HOH HOH . D 3 HOH A 175 476 175 HOH HOH . D 3 HOH A 176 477 176 HOH HOH . D 3 HOH A 177 478 177 HOH HOH . D 3 HOH A 178 479 178 HOH HOH . D 3 HOH A 179 480 179 HOH HOH . D 3 HOH A 180 481 180 HOH HOH . D 3 HOH A 181 482 181 HOH HOH . D 3 HOH A 182 483 182 HOH HOH . D 3 HOH A 183 484 183 HOH HOH . D 3 HOH A 184 485 184 HOH HOH . D 3 HOH A 185 486 185 HOH HOH . D 3 HOH A 186 487 186 HOH HOH . D 3 HOH A 187 488 187 HOH HOH . D 3 HOH A 188 489 188 HOH HOH . D 3 HOH A 189 490 189 HOH HOH . D 3 HOH A 190 491 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . B 2 13.255 57.443 44.925 1 21.77 ? C1 MLA 300 A 1 HETATM 2 O O1A MLA . . . B 2 13.609 56.355 44.475 1 22.74 ? O1A MLA 300 A 1 HETATM 3 O O1B MLA . . . B 2 13.112 58.397 44.159 1 21.6 ? O1B MLA 300 A 1 HETATM 4 C C2 MLA . . . B 2 13.006 57.58 46.412 1 21.13 ? C2 MLA 300 A 1 HETATM 5 C C3 MLA . . . B 2 12.833 59.033 46.809 1 20.69 ? C3 MLA 300 A 1 HETATM 6 O O3A MLA . . . B 2 13.806 59.667 47.26 1 17.2 ? O3A MLA 300 A 1 HETATM 7 O O3B MLA . . . B 2 11.714 59.577 46.684 1 17.3 ? O3B MLA 300 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 7 #