data_2AQ8 # _model_server_result.job_id 9rbuAWh_lWABuHjGDOZwLw _model_server_result.datetime_utc '2024-11-29 17:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":447}' # _entry.id 2AQ8 # _exptl.entry_id 2AQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AQ8 _cell.length_a 96.022 _cell.length_b 96.022 _cell.length_c 138.164 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 48.011 -83.157491 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.054667 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 48.011 -83.157491 46.054667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB LYS 181 A LYS 181 1_555 C CB LYS . A LYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale2 A CG LYS 181 A LYS 181 1_555 C CB LYS . A LYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? covale ? covale3 A CD LYS 181 A LYS 181 1_555 C CG LYS . A LYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? covale ? covale4 A CD LYS 181 A LYS 181 1_555 C CD LYS . A LYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 194 n n N H LYS sing 195 n n N H2 LYS sing 196 n n CA C LYS sing 197 n n CA CB LYS sing 198 n n CA HA LYS sing 199 n n C O LYS doub 200 n n C OXT LYS sing 201 n n CB CG LYS sing 202 n n CB HB2 LYS sing 203 n n CB HB3 LYS sing 204 n n CG CD LYS sing 205 n n CG HG2 LYS sing 206 n n CG HG3 LYS sing 207 n n CD CE LYS sing 208 n n CD HD2 LYS sing 209 n n CD HD3 LYS sing 210 n n CE NZ LYS sing 211 n n CE HE2 LYS sing 212 n n CE HE3 LYS sing 213 n n NZ HZ1 LYS sing 214 n n NZ HZ2 LYS sing 215 n n NZ HZ3 LYS sing 216 n n OXT HXT LYS sing 217 n n # _atom_sites.entry_id 2AQ8 _atom_sites.fract_transf_matrix[1][1] 0.010414 _atom_sites.fract_transf_matrix[1][2] 0.006013 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 270 270 NAI NAH . C 3 LYS A 1 447 447 LYS LYS . D 4 HOH A 1 271 271 HOH HOH . D 4 HOH A 2 272 272 HOH HOH . D 4 HOH A 3 273 273 HOH HOH . D 4 HOH A 4 274 274 HOH HOH . D 4 HOH A 5 275 275 HOH HOH . D 4 HOH A 6 276 276 HOH HOH . D 4 HOH A 7 277 277 HOH HOH . D 4 HOH A 8 278 278 HOH HOH . D 4 HOH A 9 279 279 HOH HOH . D 4 HOH A 10 280 280 HOH HOH . D 4 HOH A 11 281 281 HOH HOH . D 4 HOH A 12 282 282 HOH HOH . D 4 HOH A 13 283 283 HOH HOH . D 4 HOH A 14 284 284 HOH HOH . D 4 HOH A 15 285 285 HOH HOH . D 4 HOH A 16 286 286 HOH HOH . D 4 HOH A 17 287 287 HOH HOH . D 4 HOH A 18 288 288 HOH HOH . D 4 HOH A 19 289 289 HOH HOH . D 4 HOH A 20 290 290 HOH HOH . D 4 HOH A 21 291 291 HOH HOH . D 4 HOH A 22 292 292 HOH HOH . D 4 HOH A 23 293 293 HOH HOH . D 4 HOH A 24 294 294 HOH HOH . D 4 HOH A 25 295 295 HOH HOH . D 4 HOH A 26 296 296 HOH HOH . D 4 HOH A 27 297 297 HOH HOH . D 4 HOH A 28 298 298 HOH HOH . D 4 HOH A 29 299 299 HOH HOH . D 4 HOH A 30 300 300 HOH HOH . D 4 HOH A 31 301 301 HOH HOH . D 4 HOH A 32 302 302 HOH HOH . D 4 HOH A 33 303 303 HOH HOH . D 4 HOH A 34 304 304 HOH HOH . D 4 HOH A 35 305 305 HOH HOH . D 4 HOH A 36 306 306 HOH HOH . D 4 HOH A 37 307 307 HOH HOH . D 4 HOH A 38 308 308 HOH HOH . D 4 HOH A 39 309 309 HOH HOH . D 4 HOH A 40 310 310 HOH HOH . D 4 HOH A 41 311 311 HOH HOH . D 4 HOH A 42 312 312 HOH HOH . D 4 HOH A 43 313 313 HOH HOH . D 4 HOH A 44 314 314 HOH HOH . D 4 HOH A 45 315 315 HOH HOH . D 4 HOH A 46 316 316 HOH HOH . D 4 HOH A 47 317 317 HOH HOH . D 4 HOH A 48 318 318 HOH HOH . D 4 HOH A 49 319 319 HOH HOH . D 4 HOH A 50 320 320 HOH HOH . D 4 HOH A 51 321 321 HOH HOH . D 4 HOH A 52 322 322 HOH HOH . D 4 HOH A 53 323 323 HOH HOH . D 4 HOH A 54 324 324 HOH HOH . D 4 HOH A 55 325 325 HOH HOH . D 4 HOH A 56 326 326 HOH HOH . D 4 HOH A 57 327 327 HOH HOH . D 4 HOH A 58 328 328 HOH HOH . D 4 HOH A 59 329 329 HOH HOH . D 4 HOH A 60 330 330 HOH HOH . D 4 HOH A 61 331 331 HOH HOH . D 4 HOH A 62 332 332 HOH HOH . D 4 HOH A 63 333 333 HOH HOH . D 4 HOH A 64 334 334 HOH HOH . D 4 HOH A 65 335 335 HOH HOH . D 4 HOH A 66 336 336 HOH HOH . D 4 HOH A 67 337 337 HOH HOH . D 4 HOH A 68 338 338 HOH HOH . D 4 HOH A 69 339 339 HOH HOH . D 4 HOH A 70 340 340 HOH HOH . D 4 HOH A 71 341 341 HOH HOH . D 4 HOH A 72 342 342 HOH HOH . D 4 HOH A 73 343 343 HOH HOH . D 4 HOH A 74 344 344 HOH HOH . D 4 HOH A 75 345 345 HOH HOH . D 4 HOH A 76 346 346 HOH HOH . D 4 HOH A 77 347 347 HOH HOH . D 4 HOH A 78 348 348 HOH HOH . D 4 HOH A 79 349 349 HOH HOH . D 4 HOH A 80 350 350 HOH HOH . D 4 HOH A 81 351 351 HOH HOH . D 4 HOH A 82 352 352 HOH HOH . D 4 HOH A 83 353 353 HOH HOH . D 4 HOH A 84 354 354 HOH HOH . D 4 HOH A 85 355 355 HOH HOH . D 4 HOH A 86 356 356 HOH HOH . D 4 HOH A 87 357 357 HOH HOH . D 4 HOH A 88 358 358 HOH HOH . D 4 HOH A 89 359 359 HOH HOH . D 4 HOH A 90 360 360 HOH HOH . D 4 HOH A 91 361 361 HOH HOH . D 4 HOH A 92 362 362 HOH HOH . D 4 HOH A 93 363 363 HOH HOH . D 4 HOH A 94 364 364 HOH HOH . D 4 HOH A 95 365 365 HOH HOH . D 4 HOH A 96 366 366 HOH HOH . D 4 HOH A 97 367 367 HOH HOH . D 4 HOH A 98 368 368 HOH HOH . D 4 HOH A 99 369 369 HOH HOH . D 4 HOH A 100 370 370 HOH HOH . D 4 HOH A 101 371 371 HOH HOH . D 4 HOH A 102 372 372 HOH HOH . D 4 HOH A 103 373 373 HOH HOH . D 4 HOH A 104 374 374 HOH HOH . D 4 HOH A 105 375 375 HOH HOH . D 4 HOH A 106 376 376 HOH HOH . D 4 HOH A 107 377 377 HOH HOH . D 4 HOH A 108 378 378 HOH HOH . D 4 HOH A 109 379 379 HOH HOH . D 4 HOH A 110 380 380 HOH HOH . D 4 HOH A 111 381 381 HOH HOH . D 4 HOH A 112 382 382 HOH HOH . D 4 HOH A 113 383 383 HOH HOH . D 4 HOH A 114 384 384 HOH HOH . D 4 HOH A 115 385 385 HOH HOH . D 4 HOH A 116 386 386 HOH HOH . D 4 HOH A 117 387 387 HOH HOH . D 4 HOH A 118 388 388 HOH HOH . D 4 HOH A 119 389 389 HOH HOH . D 4 HOH A 120 390 390 HOH HOH . D 4 HOH A 121 391 391 HOH HOH . D 4 HOH A 122 392 392 HOH HOH . D 4 HOH A 123 393 393 HOH HOH . D 4 HOH A 124 394 394 HOH HOH . D 4 HOH A 125 395 395 HOH HOH . D 4 HOH A 126 396 396 HOH HOH . D 4 HOH A 127 397 397 HOH HOH . D 4 HOH A 128 398 398 HOH HOH . D 4 HOH A 129 399 399 HOH HOH . D 4 HOH A 130 400 400 HOH HOH . D 4 HOH A 131 401 401 HOH HOH . D 4 HOH A 132 402 402 HOH HOH . D 4 HOH A 133 403 403 HOH HOH . D 4 HOH A 134 404 404 HOH HOH . D 4 HOH A 135 405 405 HOH HOH . D 4 HOH A 136 406 406 HOH HOH . D 4 HOH A 137 407 407 HOH HOH . D 4 HOH A 138 408 408 HOH HOH . D 4 HOH A 139 409 409 HOH HOH . D 4 HOH A 140 410 410 HOH HOH . D 4 HOH A 141 411 411 HOH HOH . D 4 HOH A 142 412 412 HOH HOH . D 4 HOH A 143 413 413 HOH HOH . D 4 HOH A 144 414 414 HOH HOH . D 4 HOH A 145 415 415 HOH HOH . D 4 HOH A 146 416 416 HOH HOH . D 4 HOH A 147 417 417 HOH HOH . D 4 HOH A 148 418 418 HOH HOH . D 4 HOH A 149 419 419 HOH HOH . D 4 HOH A 150 420 420 HOH HOH . D 4 HOH A 151 421 421 HOH HOH . D 4 HOH A 152 422 422 HOH HOH . D 4 HOH A 153 423 423 HOH HOH . D 4 HOH A 154 424 424 HOH HOH . D 4 HOH A 155 425 425 HOH HOH . D 4 HOH A 156 426 426 HOH HOH . D 4 HOH A 157 427 427 HOH HOH . D 4 HOH A 158 428 428 HOH HOH . D 4 HOH A 159 429 429 HOH HOH . D 4 HOH A 160 430 430 HOH HOH . D 4 HOH A 161 431 431 HOH HOH . D 4 HOH A 162 432 432 HOH HOH . D 4 HOH A 163 433 433 HOH HOH . D 4 HOH A 164 434 434 HOH HOH . D 4 HOH A 165 435 435 HOH HOH . D 4 HOH A 166 436 436 HOH HOH . D 4 HOH A 167 437 437 HOH HOH . D 4 HOH A 168 438 438 HOH HOH . D 4 HOH A 169 439 439 HOH HOH . D 4 HOH A 170 440 440 HOH HOH . D 4 HOH A 171 441 441 HOH HOH . D 4 HOH A 172 442 442 HOH HOH . D 4 HOH A 173 443 443 HOH HOH . D 4 HOH A 174 444 444 HOH HOH . D 4 HOH A 175 445 445 HOH HOH . D 4 HOH A 176 446 446 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB LYS . . . C 3 5.24 -36.948 42.065 0.44 30.94 ? CB LYS 447 A 1 HETATM 2 C CG LYS . . . C 3 6.328 -36.156 41.387 0.44 29.26 ? CG LYS 447 A 1 HETATM 3 C CD LYS . . . C 3 6.199 -34.727 41.766 0.44 29.06 ? CD LYS 447 A 1 HETATM 4 C CE LYS . . . C 3 7.5 -34.031 41.634 0.44 28.05 ? CE LYS 447 A 1 HETATM 5 N NZ LYS . . . C 3 7.258 -32.83 40.824 0.44 29.33 ? NZ LYS 447 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #