data_2AQH # _model_server_result.job_id tLKRaCZpANYuEJqeErnjfA _model_server_result.datetime_utc '2024-11-29 15:36:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":270}' # _entry.id 2AQH # _exptl.entry_id 2AQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AQH _cell.length_a 95.947 _cell.length_b 95.947 _cell.length_c 138.238 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 47.9735 -83.092539 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.079333 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 47.9735 -83.092539 46.079333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2AQH _atom_sites.fract_transf_matrix[1][1] 0.010422 _atom_sites.fract_transf_matrix[1][2] 0.006017 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 270 270 NAI NAH . C 3 HOH A 1 271 271 HOH HOH . C 3 HOH A 2 272 272 HOH HOH . C 3 HOH A 3 273 273 HOH HOH . C 3 HOH A 4 274 274 HOH HOH . C 3 HOH A 5 276 276 HOH HOH . C 3 HOH A 6 277 277 HOH HOH . C 3 HOH A 7 278 278 HOH HOH . C 3 HOH A 8 279 279 HOH HOH . C 3 HOH A 9 280 280 HOH HOH . C 3 HOH A 10 281 281 HOH HOH . C 3 HOH A 11 282 282 HOH HOH . C 3 HOH A 12 283 283 HOH HOH . C 3 HOH A 13 284 284 HOH HOH . C 3 HOH A 14 285 285 HOH HOH . C 3 HOH A 15 286 286 HOH HOH . C 3 HOH A 16 287 287 HOH HOH . C 3 HOH A 17 288 288 HOH HOH . C 3 HOH A 18 290 290 HOH HOH . C 3 HOH A 19 291 291 HOH HOH . C 3 HOH A 20 292 292 HOH HOH . C 3 HOH A 21 293 293 HOH HOH . C 3 HOH A 22 294 294 HOH HOH . C 3 HOH A 23 295 295 HOH HOH . C 3 HOH A 24 296 296 HOH HOH . C 3 HOH A 25 297 297 HOH HOH . C 3 HOH A 26 298 298 HOH HOH . C 3 HOH A 27 299 299 HOH HOH . C 3 HOH A 28 300 300 HOH HOH . C 3 HOH A 29 301 301 HOH HOH . C 3 HOH A 30 302 302 HOH HOH . C 3 HOH A 31 303 303 HOH HOH . C 3 HOH A 32 304 304 HOH HOH . C 3 HOH A 33 305 305 HOH HOH . C 3 HOH A 34 306 306 HOH HOH . C 3 HOH A 35 307 307 HOH HOH . C 3 HOH A 36 308 308 HOH HOH . C 3 HOH A 37 309 309 HOH HOH . C 3 HOH A 38 310 310 HOH HOH . C 3 HOH A 39 311 311 HOH HOH . C 3 HOH A 40 312 312 HOH HOH . C 3 HOH A 41 313 313 HOH HOH . C 3 HOH A 42 314 314 HOH HOH . C 3 HOH A 43 315 315 HOH HOH . C 3 HOH A 44 316 316 HOH HOH . C 3 HOH A 45 317 317 HOH HOH . C 3 HOH A 46 318 318 HOH HOH . C 3 HOH A 47 319 319 HOH HOH . C 3 HOH A 48 320 320 HOH HOH . C 3 HOH A 49 321 321 HOH HOH . C 3 HOH A 50 322 322 HOH HOH . C 3 HOH A 51 323 323 HOH HOH . C 3 HOH A 52 324 324 HOH HOH . C 3 HOH A 53 325 325 HOH HOH . C 3 HOH A 54 326 326 HOH HOH . C 3 HOH A 55 327 327 HOH HOH . C 3 HOH A 56 328 328 HOH HOH . C 3 HOH A 57 329 329 HOH HOH . C 3 HOH A 58 330 330 HOH HOH . C 3 HOH A 59 331 331 HOH HOH . C 3 HOH A 60 332 332 HOH HOH . C 3 HOH A 61 333 333 HOH HOH . C 3 HOH A 62 334 334 HOH HOH . C 3 HOH A 63 335 335 HOH HOH . C 3 HOH A 64 336 336 HOH HOH . C 3 HOH A 65 337 337 HOH HOH . C 3 HOH A 66 338 338 HOH HOH . C 3 HOH A 67 339 339 HOH HOH . C 3 HOH A 68 340 340 HOH HOH . C 3 HOH A 69 341 341 HOH HOH . C 3 HOH A 70 342 342 HOH HOH . C 3 HOH A 71 343 343 HOH HOH . C 3 HOH A 72 344 344 HOH HOH . C 3 HOH A 73 345 345 HOH HOH . C 3 HOH A 74 346 346 HOH HOH . C 3 HOH A 75 347 347 HOH HOH . C 3 HOH A 76 348 348 HOH HOH . C 3 HOH A 77 349 349 HOH HOH . C 3 HOH A 78 350 350 HOH HOH . C 3 HOH A 79 351 351 HOH HOH . C 3 HOH A 80 352 352 HOH HOH . C 3 HOH A 81 353 353 HOH HOH . C 3 HOH A 82 354 354 HOH HOH . C 3 HOH A 83 355 355 HOH HOH . C 3 HOH A 84 356 356 HOH HOH . C 3 HOH A 85 357 357 HOH HOH . C 3 HOH A 86 358 358 HOH HOH . C 3 HOH A 87 359 359 HOH HOH . C 3 HOH A 88 360 360 HOH HOH . C 3 HOH A 89 361 361 HOH HOH . C 3 HOH A 90 362 362 HOH HOH . C 3 HOH A 91 363 363 HOH HOH . C 3 HOH A 92 364 364 HOH HOH . C 3 HOH A 93 365 365 HOH HOH . C 3 HOH A 94 366 366 HOH HOH . C 3 HOH A 95 367 367 HOH HOH . C 3 HOH A 96 368 368 HOH HOH . C 3 HOH A 97 369 369 HOH HOH . C 3 HOH A 98 370 370 HOH HOH . C 3 HOH A 99 371 371 HOH HOH . C 3 HOH A 100 372 372 HOH HOH . C 3 HOH A 101 373 373 HOH HOH . C 3 HOH A 102 374 374 HOH HOH . C 3 HOH A 103 375 375 HOH HOH . C 3 HOH A 104 376 376 HOH HOH . C 3 HOH A 105 377 377 HOH HOH . C 3 HOH A 106 378 378 HOH HOH . C 3 HOH A 107 379 379 HOH HOH . C 3 HOH A 108 380 380 HOH HOH . C 3 HOH A 109 381 381 HOH HOH . C 3 HOH A 110 382 382 HOH HOH . C 3 HOH A 111 383 383 HOH HOH . C 3 HOH A 112 384 384 HOH HOH . C 3 HOH A 113 385 385 HOH HOH . C 3 HOH A 114 386 386 HOH HOH . C 3 HOH A 115 387 387 HOH HOH . C 3 HOH A 116 388 388 HOH HOH . C 3 HOH A 117 389 389 HOH HOH . C 3 HOH A 118 390 390 HOH HOH . C 3 HOH A 119 391 391 HOH HOH . C 3 HOH A 120 392 392 HOH HOH . C 3 HOH A 121 393 393 HOH HOH . C 3 HOH A 122 394 394 HOH HOH . C 3 HOH A 123 395 395 HOH HOH . C 3 HOH A 124 396 396 HOH HOH . C 3 HOH A 125 397 397 HOH HOH . C 3 HOH A 126 398 398 HOH HOH . C 3 HOH A 127 399 399 HOH HOH . C 3 HOH A 128 400 400 HOH HOH . C 3 HOH A 129 401 401 HOH HOH . C 3 HOH A 130 402 402 HOH HOH . C 3 HOH A 131 403 403 HOH HOH . C 3 HOH A 132 404 404 HOH HOH . C 3 HOH A 133 405 405 HOH HOH . C 3 HOH A 134 406 406 HOH HOH . C 3 HOH A 135 407 407 HOH HOH . C 3 HOH A 136 408 408 HOH HOH . C 3 HOH A 137 409 409 HOH HOH . C 3 HOH A 138 410 410 HOH HOH . C 3 HOH A 139 411 411 HOH HOH . C 3 HOH A 140 412 412 HOH HOH . C 3 HOH A 141 413 413 HOH HOH . C 3 HOH A 142 414 414 HOH HOH . C 3 HOH A 143 415 415 HOH HOH . C 3 HOH A 144 416 416 HOH HOH . C 3 HOH A 145 417 417 HOH HOH . C 3 HOH A 146 418 418 HOH HOH . C 3 HOH A 147 419 419 HOH HOH . C 3 HOH A 148 420 420 HOH HOH . C 3 HOH A 149 421 421 HOH HOH . C 3 HOH A 150 422 422 HOH HOH . C 3 HOH A 151 423 423 HOH HOH . C 3 HOH A 152 424 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 0.362 -32.639 11.124 1 22.16 ? PA NAI 270 A 1 HETATM 2 O O1A NAI . . . B 2 0.548 -31.306 10.487 1 21.32 ? O1A NAI 270 A 1 HETATM 3 O O2A NAI . . . B 2 -0.704 -33.536 10.546 1 19.67 ? O2A NAI 270 A 1 HETATM 4 O O5B NAI . . . B 2 0.204 -32.496 12.719 1 20.8 ? O5B NAI 270 A 1 HETATM 5 C C5B NAI . . . B 2 0.67 -31.341 13.383 1 21.04 ? C5B NAI 270 A 1 HETATM 6 C C4B NAI . . . B 2 -0.469 -30.978 14.316 1 19.18 ? C4B NAI 270 A 1 HETATM 7 O O4B NAI . . . B 2 -0.039 -29.981 15.215 1 18.06 ? O4B NAI 270 A 1 HETATM 8 C C3B NAI . . . B 2 -1.681 -30.432 13.557 1 18.74 ? C3B NAI 270 A 1 HETATM 9 O O3B NAI . . . B 2 -2.807 -31.171 13.987 1 19.63 ? O3B NAI 270 A 1 HETATM 10 C C2B NAI . . . B 2 -1.755 -29.012 14.046 1 20.31 ? C2B NAI 270 A 1 HETATM 11 O O2B NAI . . . B 2 -3.066 -28.542 14.117 1 23.05 ? O2B NAI 270 A 1 HETATM 12 C C1B NAI . . . B 2 -1.122 -29.133 15.446 1 20.59 ? C1B NAI 270 A 1 HETATM 13 N N9A NAI . . . B 2 -0.783 -27.808 15.984 1 20.23 ? N9A NAI 270 A 1 HETATM 14 C C8A NAI . . . B 2 -0.019 -26.829 15.426 1 19.94 ? C8A NAI 270 A 1 HETATM 15 N N7A NAI . . . B 2 -0.027 -25.765 16.249 1 20.59 ? N7A NAI 270 A 1 HETATM 16 C C5A NAI . . . B 2 -0.816 -26.063 17.303 1 20.79 ? C5A NAI 270 A 1 HETATM 17 C C6A NAI . . . B 2 -1.188 -25.355 18.436 1 20.14 ? C6A NAI 270 A 1 HETATM 18 N N6A NAI . . . B 2 -0.941 -24.059 18.574 1 18.9 ? N6A NAI 270 A 1 HETATM 19 N N1A NAI . . . B 2 -2.01 -25.967 19.332 1 20.78 ? N1A NAI 270 A 1 HETATM 20 C C2A NAI . . . B 2 -2.486 -27.252 19.15 1 19.24 ? C2A NAI 270 A 1 HETATM 21 N N3A NAI . . . B 2 -2.108 -27.942 18.028 1 20.09 ? N3A NAI 270 A 1 HETATM 22 C C4A NAI . . . B 2 -1.296 -27.34 17.136 1 18.95 ? C4A NAI 270 A 1 HETATM 23 O O3 NAI . . . B 2 1.817 -33.294 10.975 1 20.03 ? O3 NAI 270 A 1 HETATM 24 P PN NAI . . . B 2 2.341 -34.632 11.666 1 19.28 ? PN NAI 270 A 1 HETATM 25 O O1N NAI . . . B 2 3.497 -34.997 10.84 1 22.98 ? O1N NAI 270 A 1 HETATM 26 O O2N NAI . . . B 2 1.261 -35.61 11.888 1 19.22 ? O2N NAI 270 A 1 HETATM 27 O O5D NAI . . . B 2 2.799 -34.058 13.088 1 16.29 ? O5D NAI 270 A 1 HETATM 28 C C5D NAI . . . B 2 2.472 -34.682 14.309 1 18.02 ? C5D NAI 270 A 1 HETATM 29 C C4D NAI . . . B 2 3.741 -34.887 15.136 1 19.58 ? C4D NAI 270 A 1 HETATM 30 O O4D NAI . . . B 2 4.555 -35.953 14.594 1 19.86 ? O4D NAI 270 A 1 HETATM 31 C C3D NAI . . . B 2 4.598 -33.627 15.176 1 17.52 ? C3D NAI 270 A 1 HETATM 32 O O3D NAI . . . B 2 5.128 -33.486 16.493 1 19.45 ? O3D NAI 270 A 1 HETATM 33 C C2D NAI . . . B 2 5.708 -33.988 14.224 1 18.05 ? C2D NAI 270 A 1 HETATM 34 O O2D NAI . . . B 2 6.871 -33.221 14.436 1 17.37 ? O2D NAI 270 A 1 HETATM 35 C C1D NAI . . . B 2 5.885 -35.476 14.545 1 18.51 ? C1D NAI 270 A 1 HETATM 36 N N1N NAI . . . B 2 6.697 -36.198 13.557 1 19.04 ? N1N NAI 270 A 1 HETATM 37 C C2N NAI . . . B 2 6.459 -36.018 12.216 1 16.54 ? C2N NAI 270 A 1 HETATM 38 C C3N NAI . . . B 2 7.216 -36.705 11.284 1 19.76 ? C3N NAI 270 A 1 HETATM 39 C C7N NAI . . . B 2 6.846 -36.663 9.825 1 17.42 ? C7N NAI 270 A 1 HETATM 40 O O7N NAI . . . B 2 7.788 -37.131 8.949 1 19.13 ? O7N NAI 270 A 1 HETATM 41 N N7N NAI . . . B 2 5.68 -36.213 9.34 1 17.96 ? N7N NAI 270 A 1 HETATM 42 C C4N NAI . . . B 2 8.279 -37.521 11.713 1 18.04 ? C4N NAI 270 A 1 HETATM 43 C C5N NAI . . . B 2 8.492 -37.683 13.097 1 15.72 ? C5N NAI 270 A 1 HETATM 44 C C6N NAI . . . B 2 7.698 -37.014 14.009 1 18.08 ? C6N NAI 270 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #