data_2AQK # _model_server_result.job_id znGDMlLZKm6Cr5PLw9LwbQ _model_server_result.datetime_utc '2024-11-26 14:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":270}' # _entry.id 2AQK # _exptl.entry_id 2AQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2AQK _cell.length_a 96.245 _cell.length_b 96.245 _cell.length_c 138.054 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 48.1225 -83.350615 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.018 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 48.1225 -83.350615 46.018 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2AQK _atom_sites.fract_transf_matrix[1][1] 0.01039 _atom_sites.fract_transf_matrix[1][2] 0.005999 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 270 270 NAI NAH . C 3 HOH A 1 271 271 HOH HOH . C 3 HOH A 2 272 272 HOH HOH . C 3 HOH A 3 273 273 HOH HOH . C 3 HOH A 4 274 274 HOH HOH . C 3 HOH A 5 275 275 HOH HOH . C 3 HOH A 6 276 276 HOH HOH . C 3 HOH A 7 277 277 HOH HOH . C 3 HOH A 8 278 278 HOH HOH . C 3 HOH A 9 279 279 HOH HOH . C 3 HOH A 10 280 280 HOH HOH . C 3 HOH A 11 281 281 HOH HOH . C 3 HOH A 12 282 282 HOH HOH . C 3 HOH A 13 283 283 HOH HOH . C 3 HOH A 14 284 284 HOH HOH . C 3 HOH A 15 285 285 HOH HOH . C 3 HOH A 16 286 286 HOH HOH . C 3 HOH A 17 287 287 HOH HOH . C 3 HOH A 18 288 288 HOH HOH . C 3 HOH A 19 289 289 HOH HOH . C 3 HOH A 20 290 290 HOH HOH . C 3 HOH A 21 291 291 HOH HOH . C 3 HOH A 22 292 292 HOH HOH . C 3 HOH A 23 293 293 HOH HOH . C 3 HOH A 24 294 294 HOH HOH . C 3 HOH A 25 295 295 HOH HOH . C 3 HOH A 26 296 296 HOH HOH . C 3 HOH A 27 297 297 HOH HOH . C 3 HOH A 28 298 298 HOH HOH . C 3 HOH A 29 299 299 HOH HOH . C 3 HOH A 30 300 300 HOH HOH . C 3 HOH A 31 301 301 HOH HOH . C 3 HOH A 32 302 302 HOH HOH . C 3 HOH A 33 303 303 HOH HOH . C 3 HOH A 34 304 304 HOH HOH . C 3 HOH A 35 305 305 HOH HOH . C 3 HOH A 36 306 306 HOH HOH . C 3 HOH A 37 307 307 HOH HOH . C 3 HOH A 38 308 308 HOH HOH . C 3 HOH A 39 309 309 HOH HOH . C 3 HOH A 40 310 310 HOH HOH . C 3 HOH A 41 311 311 HOH HOH . C 3 HOH A 42 312 312 HOH HOH . C 3 HOH A 43 313 313 HOH HOH . C 3 HOH A 44 314 314 HOH HOH . C 3 HOH A 45 315 315 HOH HOH . C 3 HOH A 46 316 316 HOH HOH . C 3 HOH A 47 317 317 HOH HOH . C 3 HOH A 48 318 318 HOH HOH . C 3 HOH A 49 319 319 HOH HOH . C 3 HOH A 50 320 320 HOH HOH . C 3 HOH A 51 321 321 HOH HOH . C 3 HOH A 52 322 322 HOH HOH . C 3 HOH A 53 323 323 HOH HOH . C 3 HOH A 54 324 324 HOH HOH . C 3 HOH A 55 325 325 HOH HOH . C 3 HOH A 56 326 326 HOH HOH . C 3 HOH A 57 327 327 HOH HOH . C 3 HOH A 58 328 328 HOH HOH . C 3 HOH A 59 329 329 HOH HOH . C 3 HOH A 60 330 330 HOH HOH . C 3 HOH A 61 331 331 HOH HOH . C 3 HOH A 62 332 332 HOH HOH . C 3 HOH A 63 333 333 HOH HOH . C 3 HOH A 64 334 334 HOH HOH . C 3 HOH A 65 335 335 HOH HOH . C 3 HOH A 66 336 336 HOH HOH . C 3 HOH A 67 337 337 HOH HOH . C 3 HOH A 68 338 338 HOH HOH . C 3 HOH A 69 339 339 HOH HOH . C 3 HOH A 70 340 340 HOH HOH . C 3 HOH A 71 341 341 HOH HOH . C 3 HOH A 72 342 342 HOH HOH . C 3 HOH A 73 343 343 HOH HOH . C 3 HOH A 74 344 344 HOH HOH . C 3 HOH A 75 345 345 HOH HOH . C 3 HOH A 76 346 346 HOH HOH . C 3 HOH A 77 347 347 HOH HOH . C 3 HOH A 78 348 348 HOH HOH . C 3 HOH A 79 349 349 HOH HOH . C 3 HOH A 80 350 350 HOH HOH . C 3 HOH A 81 351 351 HOH HOH . C 3 HOH A 82 352 352 HOH HOH . C 3 HOH A 83 353 353 HOH HOH . C 3 HOH A 84 354 354 HOH HOH . C 3 HOH A 85 355 355 HOH HOH . C 3 HOH A 86 356 356 HOH HOH . C 3 HOH A 87 357 357 HOH HOH . C 3 HOH A 88 358 358 HOH HOH . C 3 HOH A 89 359 359 HOH HOH . C 3 HOH A 90 360 360 HOH HOH . C 3 HOH A 91 361 361 HOH HOH . C 3 HOH A 92 362 362 HOH HOH . C 3 HOH A 93 363 363 HOH HOH . C 3 HOH A 94 364 364 HOH HOH . C 3 HOH A 95 365 365 HOH HOH . C 3 HOH A 96 366 366 HOH HOH . C 3 HOH A 97 367 367 HOH HOH . C 3 HOH A 98 368 368 HOH HOH . C 3 HOH A 99 369 369 HOH HOH . C 3 HOH A 100 370 370 HOH HOH . C 3 HOH A 101 371 371 HOH HOH . C 3 HOH A 102 372 372 HOH HOH . C 3 HOH A 103 373 373 HOH HOH . C 3 HOH A 104 374 374 HOH HOH . C 3 HOH A 105 375 375 HOH HOH . C 3 HOH A 106 376 376 HOH HOH . C 3 HOH A 107 377 377 HOH HOH . C 3 HOH A 108 378 378 HOH HOH . C 3 HOH A 109 379 379 HOH HOH . C 3 HOH A 110 380 380 HOH HOH . C 3 HOH A 111 381 381 HOH HOH . C 3 HOH A 112 382 382 HOH HOH . C 3 HOH A 113 383 383 HOH HOH . C 3 HOH A 114 384 384 HOH HOH . C 3 HOH A 115 385 385 HOH HOH . C 3 HOH A 116 386 386 HOH HOH . C 3 HOH A 117 387 387 HOH HOH . C 3 HOH A 118 388 388 HOH HOH . C 3 HOH A 119 389 389 HOH HOH . C 3 HOH A 120 390 390 HOH HOH . C 3 HOH A 121 391 391 HOH HOH . C 3 HOH A 122 392 392 HOH HOH . C 3 HOH A 123 393 393 HOH HOH . C 3 HOH A 124 394 394 HOH HOH . C 3 HOH A 125 395 395 HOH HOH . C 3 HOH A 126 396 396 HOH HOH . C 3 HOH A 127 397 397 HOH HOH . C 3 HOH A 128 398 398 HOH HOH . C 3 HOH A 129 399 399 HOH HOH . C 3 HOH A 130 400 400 HOH HOH . C 3 HOH A 131 401 401 HOH HOH . C 3 HOH A 132 402 402 HOH HOH . C 3 HOH A 133 403 403 HOH HOH . C 3 HOH A 134 404 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 0.473 -33.023 11.032 1 25.57 ? PA NAI 270 A 1 HETATM 2 O O1A NAI . . . B 2 0.627 -31.784 10.247 1 20.4 ? O1A NAI 270 A 1 HETATM 3 O O2A NAI . . . B 2 -0.509 -33.971 10.428 1 27.51 ? O2A NAI 270 A 1 HETATM 4 O O5B NAI . . . B 2 0.122 -32.764 12.601 1 27.08 ? O5B NAI 270 A 1 HETATM 5 C C5B NAI . . . B 2 0.744 -31.718 13.299 1 25.6 ? C5B NAI 270 A 1 HETATM 6 C C4B NAI . . . B 2 -0.315 -31.249 14.282 1 26.52 ? C4B NAI 270 A 1 HETATM 7 O O4B NAI . . . B 2 0.17 -30.194 15.11 1 26.66 ? O4B NAI 270 A 1 HETATM 8 C C3B NAI . . . B 2 -1.511 -30.696 13.495 1 25.05 ? C3B NAI 270 A 1 HETATM 9 O O3B NAI . . . B 2 -2.595 -31.529 13.791 1 18.39 ? O3B NAI 270 A 1 HETATM 10 C C2B NAI . . . B 2 -1.685 -29.318 14.02 1 26.26 ? C2B NAI 270 A 1 HETATM 11 O O2B NAI . . . B 2 -3.046 -28.937 14.116 1 32.05 ? O2B NAI 270 A 1 HETATM 12 C C1B NAI . . . B 2 -0.984 -29.461 15.393 1 25.44 ? C1B NAI 270 A 1 HETATM 13 N N9A NAI . . . B 2 -0.687 -28.143 15.936 1 23.57 ? N9A NAI 270 A 1 HETATM 14 C C8A NAI . . . B 2 0.061 -27.181 15.33 1 23.23 ? C8A NAI 270 A 1 HETATM 15 N N7A NAI . . . B 2 0.035 -26.1 16.119 1 22.63 ? N7A NAI 270 A 1 HETATM 16 C C5A NAI . . . B 2 -0.729 -26.384 17.223 1 19.19 ? C5A NAI 270 A 1 HETATM 17 C C6A NAI . . . B 2 -1.077 -25.63 18.334 1 20.97 ? C6A NAI 270 A 1 HETATM 18 N N6A NAI . . . B 2 -0.806 -24.302 18.467 1 20.76 ? N6A NAI 270 A 1 HETATM 19 N N1A NAI . . . B 2 -1.878 -26.233 19.242 1 23.69 ? N1A NAI 270 A 1 HETATM 20 C C2A NAI . . . B 2 -2.362 -27.527 19.092 1 23.47 ? C2A NAI 270 A 1 HETATM 21 N N3A NAI . . . B 2 -1.99 -28.247 18.004 1 21.02 ? N3A NAI 270 A 1 HETATM 22 C C4A NAI . . . B 2 -1.199 -27.656 17.097 1 20.24 ? C4A NAI 270 A 1 HETATM 23 O O3 NAI . . . B 2 1.994 -33.593 11.062 1 24.73 ? O3 NAI 270 A 1 HETATM 24 P PN NAI . . . B 2 2.499 -34.978 11.659 1 25.92 ? PN NAI 270 A 1 HETATM 25 O O1N NAI . . . B 2 3.693 -35.242 10.838 1 30.06 ? O1N NAI 270 A 1 HETATM 26 O O2N NAI . . . B 2 1.456 -36.019 11.706 1 26.61 ? O2N NAI 270 A 1 HETATM 27 O O5D NAI . . . B 2 2.819 -34.302 13.074 1 24.13 ? O5D NAI 270 A 1 HETATM 28 C C5D NAI . . . B 2 2.475 -34.954 14.268 1 24.26 ? C5D NAI 270 A 1 HETATM 29 C C4D NAI . . . B 2 3.753 -35.116 15.061 1 25.13 ? C4D NAI 270 A 1 HETATM 30 O O4D NAI . . . B 2 4.608 -36.098 14.439 1 23.34 ? O4D NAI 270 A 1 HETATM 31 C C3D NAI . . . B 2 4.531 -33.807 15.1 1 21.8 ? C3D NAI 270 A 1 HETATM 32 O O3D NAI . . . B 2 5.051 -33.73 16.382 1 23.83 ? O3D NAI 270 A 1 HETATM 33 C C2D NAI . . . B 2 5.719 -34.091 14.205 1 22.81 ? C2D NAI 270 A 1 HETATM 34 O O2D NAI . . . B 2 6.832 -33.264 14.475 1 23.01 ? O2D NAI 270 A 1 HETATM 35 C C1D NAI . . . B 2 5.926 -35.564 14.472 1 20.09 ? C1D NAI 270 A 1 HETATM 36 N N1N NAI . . . B 2 6.778 -36.298 13.516 1 20.68 ? N1N NAI 270 A 1 HETATM 37 C C2N NAI . . . B 2 6.55 -36.161 12.171 1 15.07 ? C2N NAI 270 A 1 HETATM 38 C C3N NAI . . . B 2 7.31 -36.894 11.27 1 18.56 ? C3N NAI 270 A 1 HETATM 39 C C7N NAI . . . B 2 6.99 -36.838 9.812 1 17.1 ? C7N NAI 270 A 1 HETATM 40 O O7N NAI . . . B 2 7.928 -37.344 8.95 1 21.31 ? O7N NAI 270 A 1 HETATM 41 N N7N NAI . . . B 2 5.872 -36.283 9.334 1 15.75 ? N7N NAI 270 A 1 HETATM 42 C C4N NAI . . . B 2 8.362 -37.68 11.731 1 20.3 ? C4N NAI 270 A 1 HETATM 43 C C5N NAI . . . B 2 8.567 -37.79 13.108 1 21.03 ? C5N NAI 270 A 1 HETATM 44 C C6N NAI . . . B 2 7.771 -37.123 14.024 1 15.71 ? C6N NAI 270 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #