data_2AQX # _model_server_result.job_id jXYzaUXaqYv5U_qSuXv-CA _model_server_result.datetime_utc '2025-03-04 09:06:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2aqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1462}' # _entry.id 2AQX # _exptl.entry_id 2AQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 59.9 _cell.angle_beta 72.74 _cell.angle_gamma 88.18 _cell.entry_id 2AQX _cell.length_a 53.204 _cell.length_b 60.655 _cell.length_c 56.851 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O HOH . A HOH 105 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 C MG MG . A MG 600 1_555 A OD2 ASP 244 A ASP 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 C MG MG . A MG 600 1_555 E O3G ATP . A ATP 1462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc4 C MG MG . A MG 600 1_555 E O2A ATP . A ATP 1462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc5 D MG MG . A MG 601 1_555 A OD2 ASP 244 A ASP 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc6 D MG MG . A MG 601 1_555 A OD1 ASP 244 A ASP 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc7 D MG MG . A MG 601 1_555 E O1B ATP . A ATP 1462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 D MG MG . A MG 601 1_555 E O1G ATP . A ATP 1462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 B OD2 ASP 244 B ASP 893 1_555 F MG MG . B MG 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 B OD2 ASP 244 B ASP 893 1_555 G MG MG . B MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc11 B OD1 ASP 244 B ASP 893 1_555 G MG MG . B MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc12 F MG MG . B MG 1600 1_555 H O2A ATP . B ATP 2462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc13 F MG MG . B MG 1600 1_555 H O3G ATP . B ATP 2462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc14 G MG MG . B MG 1601 1_555 H O1B ATP . B ATP 2462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc15 G MG MG . B MG 1601 1_555 H O1G ATP . B ATP 2462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2AQX _atom_sites.fract_transf_matrix[1][1] 0.018796 _atom_sites.fract_transf_matrix[1][2] -0.000597 _atom_sites.fract_transf_matrix[1][3] -0.006456 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016495 _atom_sites.fract_transf_matrix[2][3] -0.009925 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 600 600 MG MG . D 2 MG A 1 601 601 MG MG . E 3 ATP A 1 1462 1462 ATP ATP . F 2 MG B 1 1600 1600 MG MG . G 2 MG B 1 1601 1601 MG MG . H 3 ATP B 1 2462 2462 ATP ATP . I 4 HOH A 1 2 2 HOH HOH . I 4 HOH A 2 4 4 HOH HOH . I 4 HOH A 3 6 6 HOH HOH . I 4 HOH A 4 7 7 HOH HOH . I 4 HOH A 5 8 8 HOH HOH . I 4 HOH A 6 9 9 HOH HOH . I 4 HOH A 7 10 10 HOH HOH . I 4 HOH A 8 11 11 HOH HOH . I 4 HOH A 9 13 13 HOH HOH . I 4 HOH A 10 14 14 HOH HOH . I 4 HOH A 11 16 16 HOH HOH . I 4 HOH A 12 17 17 HOH HOH . I 4 HOH A 13 18 18 HOH HOH . I 4 HOH A 14 20 20 HOH HOH . I 4 HOH A 15 21 21 HOH HOH . I 4 HOH A 16 22 22 HOH HOH . I 4 HOH A 17 24 24 HOH HOH . I 4 HOH A 18 27 27 HOH HOH . I 4 HOH A 19 28 28 HOH HOH . I 4 HOH A 20 33 33 HOH HOH . I 4 HOH A 21 37 37 HOH HOH . I 4 HOH A 22 40 40 HOH HOH . I 4 HOH A 23 41 41 HOH HOH . I 4 HOH A 24 42 42 HOH HOH . I 4 HOH A 25 44 44 HOH HOH . I 4 HOH A 26 47 47 HOH HOH . I 4 HOH A 27 51 51 HOH HOH . I 4 HOH A 28 66 66 HOH HOH . I 4 HOH A 29 68 68 HOH HOH . I 4 HOH A 30 70 70 HOH HOH . I 4 HOH A 31 74 74 HOH HOH . I 4 HOH A 32 76 76 HOH HOH . I 4 HOH A 33 77 77 HOH HOH . I 4 HOH A 34 78 78 HOH HOH . I 4 HOH A 35 81 81 HOH HOH . I 4 HOH A 36 84 84 HOH HOH . I 4 HOH A 37 93 93 HOH HOH . I 4 HOH A 38 94 94 HOH HOH . I 4 HOH A 39 96 96 HOH HOH . I 4 HOH A 40 97 97 HOH HOH . I 4 HOH A 41 98 98 HOH HOH . I 4 HOH A 42 99 99 HOH HOH . I 4 HOH A 43 102 102 HOH HOH . I 4 HOH A 44 103 103 HOH HOH . I 4 HOH A 45 105 105 HOH HOH . I 4 HOH A 46 108 108 HOH HOH . I 4 HOH A 47 111 111 HOH HOH . I 4 HOH A 48 113 113 HOH HOH . J 4 HOH B 1 3 3 HOH HOH . J 4 HOH B 2 5 5 HOH HOH . J 4 HOH B 3 12 12 HOH HOH . J 4 HOH B 4 15 15 HOH HOH . J 4 HOH B 5 19 19 HOH HOH . J 4 HOH B 6 23 23 HOH HOH . J 4 HOH B 7 26 26 HOH HOH . J 4 HOH B 8 29 29 HOH HOH . J 4 HOH B 9 30 30 HOH HOH . J 4 HOH B 10 31 31 HOH HOH . J 4 HOH B 11 34 34 HOH HOH . J 4 HOH B 12 35 35 HOH HOH . J 4 HOH B 13 36 36 HOH HOH . J 4 HOH B 14 38 38 HOH HOH . J 4 HOH B 15 39 39 HOH HOH . J 4 HOH B 16 45 45 HOH HOH . J 4 HOH B 17 46 46 HOH HOH . J 4 HOH B 18 48 48 HOH HOH . J 4 HOH B 19 49 49 HOH HOH . J 4 HOH B 20 50 50 HOH HOH . J 4 HOH B 21 52 52 HOH HOH . J 4 HOH B 22 53 53 HOH HOH . J 4 HOH B 23 54 54 HOH HOH . J 4 HOH B 24 55 55 HOH HOH . J 4 HOH B 25 56 56 HOH HOH . J 4 HOH B 26 57 57 HOH HOH . J 4 HOH B 27 59 59 HOH HOH . J 4 HOH B 28 60 60 HOH HOH . J 4 HOH B 29 61 61 HOH HOH . J 4 HOH B 30 64 64 HOH HOH . J 4 HOH B 31 65 65 HOH HOH . J 4 HOH B 32 67 67 HOH HOH . J 4 HOH B 33 69 69 HOH HOH . J 4 HOH B 34 71 71 HOH HOH . J 4 HOH B 35 72 72 HOH HOH . J 4 HOH B 36 79 79 HOH HOH . J 4 HOH B 37 80 80 HOH HOH . J 4 HOH B 38 82 82 HOH HOH . J 4 HOH B 39 83 83 HOH HOH . J 4 HOH B 40 85 85 HOH HOH . J 4 HOH B 41 86 86 HOH HOH . J 4 HOH B 42 87 87 HOH HOH . J 4 HOH B 43 88 88 HOH HOH . J 4 HOH B 44 89 89 HOH HOH . J 4 HOH B 45 90 90 HOH HOH . J 4 HOH B 46 91 91 HOH HOH . J 4 HOH B 47 92 92 HOH HOH . J 4 HOH B 48 95 95 HOH HOH . J 4 HOH B 49 100 100 HOH HOH . J 4 HOH B 50 101 101 HOH HOH . J 4 HOH B 51 112 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 -8.641 47.734 16.898 1 15.71 ? PG ATP 1462 A 1 HETATM 2 O O1G ATP . . . E 3 -9.771 48.717 16.746 1 13.26 ? O1G ATP 1462 A 1 HETATM 3 O O2G ATP . . . E 3 -7.861 47.493 15.629 1 10.15 ? O2G ATP 1462 A 1 HETATM 4 O O3G ATP . . . E 3 -8.908 46.496 17.765 1 16.02 ? O3G ATP 1462 A 1 HETATM 5 P PB ATP . . . E 3 -7.664 49.509 18.952 1 20.18 ? PB ATP 1462 A 1 HETATM 6 O O1B ATP . . . E 3 -9.092 49.454 19.453 1 18.99 ? O1B ATP 1462 A 1 HETATM 7 O O2B ATP . . . E 3 -7.049 50.812 18.491 1 21.95 ? O2B ATP 1462 A 1 HETATM 8 O O3B ATP . . . E 3 -7.49 48.553 17.701 1 18.15 ? O3B ATP 1462 A 1 HETATM 9 P PA ATP . . . E 3 -7.008 47.611 21.076 1 23.95 ? PA ATP 1462 A 1 HETATM 10 O O1A ATP . . . E 3 -7.81 48.193 22.204 1 23.59 ? O1A ATP 1462 A 1 HETATM 11 O O2A ATP . . . E 3 -7.601 46.391 20.38 1 23.17 ? O2A ATP 1462 A 1 HETATM 12 O O3A ATP . . . E 3 -6.638 48.799 20.011 1 21.38 ? O3A ATP 1462 A 1 HETATM 13 O O5' ATP . . . E 3 -5.591 47.295 21.725 1 18.52 ? O5' ATP 1462 A 1 HETATM 14 C C5' ATP . . . E 3 -4.582 46.983 20.806 1 21.38 ? C5' ATP 1462 A 1 HETATM 15 C C4' ATP . . . E 3 -3.487 46.204 21.515 1 21.64 ? C4' ATP 1462 A 1 HETATM 16 O O4' ATP . . . E 3 -2.968 46.9 22.656 1 20.49 ? O4' ATP 1462 A 1 HETATM 17 C C3' ATP . . . E 3 -4.022 44.869 21.983 1 19.68 ? C3' ATP 1462 A 1 HETATM 18 O O3' ATP . . . E 3 -3.753 43.983 20.913 1 23.74 ? O3' ATP 1462 A 1 HETATM 19 C C2' ATP . . . E 3 -3.205 44.588 23.223 1 20.37 ? C2' ATP 1462 A 1 HETATM 20 O O2' ATP . . . E 3 -1.949 43.951 22.947 1 17.34 ? O2' ATP 1462 A 1 HETATM 21 C C1' ATP . . . E 3 -2.816 45.958 23.725 1 20.75 ? C1' ATP 1462 A 1 HETATM 22 N N9 ATP . . . E 3 -3.632 46.489 24.821 1 20.96 ? N9 ATP 1462 A 1 HETATM 23 C C8 ATP . . . E 3 -4.719 47.283 24.679 1 21.35 ? C8 ATP 1462 A 1 HETATM 24 N N7 ATP . . . E 3 -5.202 47.66 25.888 1 20.92 ? N7 ATP 1462 A 1 HETATM 25 C C5 ATP . . . E 3 -4.384 47.126 26.824 1 21.3 ? C5 ATP 1462 A 1 HETATM 26 C C6 ATP . . . E 3 -4.283 47.138 28.293 1 21.67 ? C6 ATP 1462 A 1 HETATM 27 N N6 ATP . . . E 3 -5.196 47.817 29.036 1 20.19 ? N6 ATP 1462 A 1 HETATM 28 N N1 ATP . . . E 3 -3.262 46.444 28.878 1 21.6 ? N1 ATP 1462 A 1 HETATM 29 C C2 ATP . . . E 3 -2.373 45.751 28.168 1 21.26 ? C2 ATP 1462 A 1 HETATM 30 N N3 ATP . . . E 3 -2.398 45.717 26.827 1 21.93 ? N3 ATP 1462 A 1 HETATM 31 C C4 ATP . . . E 3 -3.352 46.36 26.118 1 21.73 ? C4 ATP 1462 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #