data_2ARD # _model_server_result.job_id pI2SZh7E58eehVVlaLtXVQ _model_server_result.datetime_utc '2024-11-08 09:04:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ard # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":650}' # _entry.id 2ARD # _exptl.entry_id 2ARD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ARD _cell.length_a 68.3 _cell.length_b 68.3 _cell.length_c 274.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ARD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+3/2,y+1/2,-z+3/4 -1 0 0 0 1 0 0 0 -1 102.45 34.15 206.175 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H35 N9 O15 P2' _chem_comp.formula_weight 787.566 _chem_comp.id FDA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIHYDROFLAVINE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FDA doub 83 n n PA O2A FDA sing 84 n n PA O5B FDA sing 85 n n PA O3P FDA sing 86 n n O2A HOA2 FDA sing 87 n n O5B C5B FDA sing 88 n n C5B C4B FDA sing 89 n n C5B H51A FDA sing 90 n n C5B H52A FDA sing 91 n n C4B O4B FDA sing 92 n n C4B C3B FDA sing 93 n n C4B H4B FDA sing 94 n n O4B C1B FDA sing 95 n n C3B O3B FDA sing 96 n n C3B C2B FDA sing 97 n n C3B H3B FDA sing 98 n n O3B HO3A FDA sing 99 n n C2B O2B FDA sing 100 n n C2B C1B FDA sing 101 n n C2B H2B FDA sing 102 n n O2B HO2A FDA sing 103 n n C1B N9A FDA sing 104 n n C1B H1B FDA sing 105 n n N9A C8A FDA sing 106 n y N9A C4A FDA sing 107 n y C8A N7A FDA doub 108 n y C8A H8A FDA sing 109 n n N7A C5A FDA sing 110 n y C5A C6A FDA sing 111 n y C5A C4A FDA doub 112 n y C6A N6A FDA sing 113 n n C6A N1A FDA doub 114 n y N6A H61A FDA sing 115 n n N6A H62A FDA sing 116 n n N1A C2A FDA sing 117 n y C2A N3A FDA doub 118 n y C2A H2A FDA sing 119 n n N3A C4A FDA sing 120 n y N1 C2 FDA sing 121 n n N1 C10 FDA sing 122 n n N1 HN1 FDA sing 123 n n C2 O2 FDA doub 124 n n C2 N3 FDA sing 125 n n N3 C4 FDA sing 126 n n N3 HN3 FDA sing 127 n n C4 O4 FDA doub 128 n n C4 C4X FDA sing 129 n n C4X N5 FDA sing 130 n n C4X C10 FDA doub 131 n n N5 C5X FDA sing 132 n n N5 HN5 FDA sing 133 n n C5X C6 FDA doub 134 n y C5X C9A FDA sing 135 n y C6 C7 FDA sing 136 n y C6 H6 FDA sing 137 n n C7 C7M FDA sing 138 n n C7 C8 FDA doub 139 n y C7M HM71 FDA sing 140 n n C7M HM72 FDA sing 141 n n C7M HM73 FDA sing 142 n n C8 C8M FDA sing 143 n n C8 C9 FDA sing 144 n y C8M HM81 FDA sing 145 n n C8M HM82 FDA sing 146 n n C8M HM83 FDA sing 147 n n C9 C9A FDA doub 148 n y C9 H9 FDA sing 149 n n C9A N10 FDA sing 150 n n N10 C10 FDA sing 151 n n N10 C1' FDA sing 152 n n C1' C2' FDA sing 153 n n C1' "H1'1" FDA sing 154 n n C1' "H1'2" FDA sing 155 n n C2' O2' FDA sing 156 n n C2' C3' FDA sing 157 n n C2' H2' FDA sing 158 n n O2' HO2' FDA sing 159 n n C3' O3' FDA sing 160 n n C3' C4' FDA sing 161 n n C3' H3' FDA sing 162 n n O3' HO3' FDA sing 163 n n C4' O4' FDA sing 164 n n C4' C5' FDA sing 165 n n C4' H4' FDA sing 166 n n O4' HO4' FDA sing 167 n n C5' O5' FDA sing 168 n n C5' "H5'1" FDA sing 169 n n C5' "H5'2" FDA sing 170 n n O5' P FDA sing 171 n n P O1P FDA doub 172 n n P O2P FDA sing 173 n n P O3P FDA sing 174 n n O2P HOP2 FDA sing 175 n n # _atom_sites.entry_id 2ARD _atom_sites.fract_transf_matrix[1][1] 0.01464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01464 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDA A 1 650 650 FDA FDA . C 3 HOH A 1 651 1 HOH HOH . C 3 HOH A 2 652 2 HOH HOH . C 3 HOH A 3 653 3 HOH HOH . C 3 HOH A 4 654 4 HOH HOH . C 3 HOH A 5 655 5 HOH HOH . C 3 HOH A 6 656 6 HOH HOH . C 3 HOH A 7 657 7 HOH HOH . C 3 HOH A 8 658 8 HOH HOH . C 3 HOH A 9 659 9 HOH HOH . C 3 HOH A 10 660 10 HOH HOH . C 3 HOH A 11 661 12 HOH HOH . C 3 HOH A 12 662 13 HOH HOH . C 3 HOH A 13 663 14 HOH HOH . C 3 HOH A 14 664 15 HOH HOH . C 3 HOH A 15 665 16 HOH HOH . C 3 HOH A 16 666 17 HOH HOH . C 3 HOH A 17 667 18 HOH HOH . C 3 HOH A 18 668 19 HOH HOH . C 3 HOH A 19 669 20 HOH HOH . C 3 HOH A 20 670 21 HOH HOH . C 3 HOH A 21 671 22 HOH HOH . C 3 HOH A 22 672 23 HOH HOH . C 3 HOH A 23 673 24 HOH HOH . C 3 HOH A 24 674 25 HOH HOH . C 3 HOH A 25 675 26 HOH HOH . C 3 HOH A 26 676 27 HOH HOH . C 3 HOH A 27 677 28 HOH HOH . C 3 HOH A 28 678 29 HOH HOH . C 3 HOH A 29 679 31 HOH HOH . C 3 HOH A 30 680 32 HOH HOH . C 3 HOH A 31 681 33 HOH HOH . C 3 HOH A 32 682 34 HOH HOH . C 3 HOH A 33 683 35 HOH HOH . C 3 HOH A 34 684 36 HOH HOH . C 3 HOH A 35 685 37 HOH HOH . C 3 HOH A 36 686 38 HOH HOH . C 3 HOH A 37 687 39 HOH HOH . C 3 HOH A 38 688 40 HOH HOH . C 3 HOH A 39 689 41 HOH HOH . C 3 HOH A 40 690 42 HOH HOH . C 3 HOH A 41 691 43 HOH HOH . C 3 HOH A 42 692 44 HOH HOH . C 3 HOH A 43 693 45 HOH HOH . C 3 HOH A 44 694 46 HOH HOH . C 3 HOH A 45 695 47 HOH HOH . C 3 HOH A 46 696 48 HOH HOH . C 3 HOH A 47 697 49 HOH HOH . C 3 HOH A 48 698 50 HOH HOH . C 3 HOH A 49 699 51 HOH HOH . C 3 HOH A 50 700 52 HOH HOH . C 3 HOH A 51 701 53 HOH HOH . C 3 HOH A 52 702 54 HOH HOH . C 3 HOH A 53 703 55 HOH HOH . C 3 HOH A 54 704 56 HOH HOH . C 3 HOH A 55 705 57 HOH HOH . C 3 HOH A 56 706 58 HOH HOH . C 3 HOH A 57 707 59 HOH HOH . C 3 HOH A 58 708 60 HOH HOH . C 3 HOH A 59 709 61 HOH HOH . C 3 HOH A 60 710 62 HOH HOH . C 3 HOH A 61 711 63 HOH HOH . C 3 HOH A 62 712 64 HOH HOH . C 3 HOH A 63 713 65 HOH HOH . C 3 HOH A 64 714 66 HOH HOH . C 3 HOH A 65 715 67 HOH HOH . C 3 HOH A 66 716 68 HOH HOH . C 3 HOH A 67 717 69 HOH HOH . C 3 HOH A 68 718 70 HOH HOH . C 3 HOH A 69 719 71 HOH HOH . C 3 HOH A 70 720 72 HOH HOH . C 3 HOH A 71 721 73 HOH HOH . C 3 HOH A 72 722 74 HOH HOH . C 3 HOH A 73 723 75 HOH HOH . C 3 HOH A 74 724 76 HOH HOH . C 3 HOH A 75 725 78 HOH HOH . C 3 HOH A 76 726 79 HOH HOH . C 3 HOH A 77 727 80 HOH HOH . C 3 HOH A 78 728 81 HOH HOH . C 3 HOH A 79 729 82 HOH HOH . C 3 HOH A 80 730 83 HOH HOH . C 3 HOH A 81 731 84 HOH HOH . C 3 HOH A 82 732 85 HOH HOH . C 3 HOH A 83 733 89 HOH HOH . C 3 HOH A 84 734 90 HOH HOH . C 3 HOH A 85 735 91 HOH HOH . C 3 HOH A 86 736 92 HOH HOH . C 3 HOH A 87 737 93 HOH HOH . C 3 HOH A 88 738 94 HOH HOH . C 3 HOH A 89 739 95 HOH HOH . C 3 HOH A 90 740 96 HOH HOH . C 3 HOH A 91 741 97 HOH HOH . C 3 HOH A 92 742 98 HOH HOH . C 3 HOH A 93 743 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDA . . . B 2 35.896 10.965 96.605 1 50.46 ? PA FDA 650 A 1 HETATM 2 O O1A FDA . . . B 2 35.452 12.362 97.29 1 53.66 ? O1A FDA 650 A 1 HETATM 3 O O2A FDA . . . B 2 37.099 10.198 97.11 1 48.84 ? O2A FDA 650 A 1 HETATM 4 O O5B FDA . . . B 2 34.48 10.245 96.718 1 50.26 ? O5B FDA 650 A 1 HETATM 5 C C5B FDA . . . B 2 34.452 8.821 96.57 1 53.81 ? C5B FDA 650 A 1 HETATM 6 C C4B FDA . . . B 2 33.02 8.279 96.569 1 56.28 ? C4B FDA 650 A 1 HETATM 7 O O4B FDA . . . B 2 33.231 6.893 96.159 1 58.12 ? O4B FDA 650 A 1 HETATM 8 C C3B FDA . . . B 2 32.282 8.233 97.915 1 57.33 ? C3B FDA 650 A 1 HETATM 9 O O3B FDA . . . B 2 30.859 8.416 97.671 1 57.57 ? O3B FDA 650 A 1 HETATM 10 C C2B FDA . . . B 2 32.538 6.794 98.382 1 58.13 ? C2B FDA 650 A 1 HETATM 11 O O2B FDA . . . B 2 31.449 6.385 99.244 1 61.54 ? O2B FDA 650 A 1 HETATM 12 C C1B FDA . . . B 2 32.47 6.043 97.037 1 56.42 ? C1B FDA 650 A 1 HETATM 13 N N9A FDA . . . B 2 33.095 4.685 97.047 1 55.91 ? N9A FDA 650 A 1 HETATM 14 C C8A FDA . . . B 2 34.405 4.404 97.056 1 55.83 ? C8A FDA 650 A 1 HETATM 15 N N7A FDA . . . B 2 34.596 3.079 97.101 1 54.22 ? N7A FDA 650 A 1 HETATM 16 C C5A FDA . . . B 2 33.397 2.52 97.109 1 54.06 ? C5A FDA 650 A 1 HETATM 17 C C6A FDA . . . B 2 32.975 1.196 97.132 1 56.21 ? C6A FDA 650 A 1 HETATM 18 N N6A FDA . . . B 2 33.879 0.186 97.16 1 56.61 ? N6A FDA 650 A 1 HETATM 19 N N1A FDA . . . B 2 31.643 0.959 97.121 1 56.29 ? N1A FDA 650 A 1 HETATM 20 C C2A FDA . . . B 2 30.75 1.954 97.107 1 55.64 ? C2A FDA 650 A 1 HETATM 21 N N3A FDA . . . B 2 31.127 3.221 97.079 1 54.91 ? N3A FDA 650 A 1 HETATM 22 C C4A FDA . . . B 2 32.44 3.527 97.066 1 54.72 ? C4A FDA 650 A 1 HETATM 23 N N1 FDA . . . B 2 39.49 20.281 92.562 1 58.18 ? N1 FDA 650 A 1 HETATM 24 C C2 FDA . . . B 2 39.253 21.57 92.07 1 58.97 ? C2 FDA 650 A 1 HETATM 25 O O2 FDA . . . B 2 38.797 21.727 90.93 1 58.43 ? O2 FDA 650 A 1 HETATM 26 N N3 FDA . . . B 2 39.551 22.675 92.904 1 59.65 ? N3 FDA 650 A 1 HETATM 27 C C4 FDA . . . B 2 40.077 22.492 94.212 1 58.67 ? C4 FDA 650 A 1 HETATM 28 O O4 FDA . . . B 2 40.32 23.499 94.897 1 57.53 ? O4 FDA 650 A 1 HETATM 29 C C4X FDA . . . B 2 40.304 21.175 94.677 1 58.08 ? C4X FDA 650 A 1 HETATM 30 N N5 FDA . . . B 2 40.845 20.92 95.967 1 56.64 ? N5 FDA 650 A 1 HETATM 31 C C5X FDA . . . B 2 41.418 19.665 96.255 1 56.21 ? C5X FDA 650 A 1 HETATM 32 C C6 FDA . . . B 2 42.283 19.503 97.336 1 55.63 ? C6 FDA 650 A 1 HETATM 33 C C7 FDA . . . B 2 42.838 18.242 97.593 1 56.31 ? C7 FDA 650 A 1 HETATM 34 C C7M FDA . . . B 2 43.785 18.096 98.783 1 55.55 ? C7M FDA 650 A 1 HETATM 35 C C8 FDA . . . B 2 42.51 17.141 96.778 1 55.42 ? C8 FDA 650 A 1 HETATM 36 C C8M FDA . . . B 2 43.057 15.742 97.011 1 54.76 ? C8M FDA 650 A 1 HETATM 37 C C9 FDA . . . B 2 41.645 17.308 95.71 1 55.56 ? C9 FDA 650 A 1 HETATM 38 C C9A FDA . . . B 2 41.097 18.557 95.44 1 57.32 ? C9A FDA 650 A 1 HETATM 39 N N10 FDA . . . B 2 40.238 18.733 94.316 1 57.49 ? N10 FDA 650 A 1 HETATM 40 C C10 FDA . . . B 2 39.996 20.072 93.854 1 57.96 ? C10 FDA 650 A 1 HETATM 41 C C1' FDA . . . B 2 39.683 17.559 93.601 1 56.11 ? C1' FDA 650 A 1 HETATM 42 C C2' FDA . . . B 2 38.3 17.272 94.153 1 57.28 ? C2' FDA 650 A 1 HETATM 43 O O2' FDA . . . B 2 38.379 17.196 95.588 1 58.16 ? O2' FDA 650 A 1 HETATM 44 C C3' FDA . . . B 2 37.699 15.983 93.583 1 55.74 ? C3' FDA 650 A 1 HETATM 45 O O3' FDA . . . B 2 37.886 16.005 92.179 1 56.29 ? O3' FDA 650 A 1 HETATM 46 C C4' FDA . . . B 2 36.207 15.863 93.911 1 54.85 ? C4' FDA 650 A 1 HETATM 47 O O4' FDA . . . B 2 35.78 16.87 94.859 1 57.01 ? O4' FDA 650 A 1 HETATM 48 C C5' FDA . . . B 2 35.919 14.519 94.522 1 54.33 ? C5' FDA 650 A 1 HETATM 49 O O5' FDA . . . B 2 36.078 13.526 93.528 1 51.79 ? O5' FDA 650 A 1 HETATM 50 P P FDA . . . B 2 35.582 12.004 93.819 1 47.26 ? P FDA 650 A 1 HETATM 51 O O1P FDA . . . B 2 36.572 11.224 92.803 1 45.66 ? O1P FDA 650 A 1 HETATM 52 O O2P FDA . . . B 2 34.1 11.93 93.871 1 40.01 ? O2P FDA 650 A 1 HETATM 53 O O3P FDA . . . B 2 36.384 11.4 95.077 1 49.28 ? O3P FDA 650 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 53 #