data_2ARP
#
_model_server_result.job_id            rYZX87R6o39MgwGb2wCFgg 
_model_server_result.datetime_utc      '2024-11-28 14:09:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2arp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    2ARP 
#
_exptl.entry_id    2ARP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ARP 
_cell.length_a            79.297 
_cell.length_b            94.502 
_cell.length_c            44.873 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ARP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 12 A CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 A SG CYS 11 A CYS 11 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf3 A SG CYS 40 A CYS 40 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf5 A SG CYS 80 A CYS 80 1_555 A SG CYS 80 A CYS 80 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 B SG CYS 6 F CYS 66 1_555 B SG CYS 17 F CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf7 B SG CYS 11 F CYS 71 1_555 B SG CYS 27 F CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 29 F CYS 89 1_555 B SG CYS 61 F CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 B SG CYS 33 F CYS 93 1_555 B SG CYS 54 F CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf10 B SG CYS 43 F CYS 103 1_555 B SG CYS 75 F CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 B SG CYS 79 F CYS 139 1_555 B SG CYS 90 F CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf12 B SG CYS 84 F CYS 144 1_555 B SG CYS 100 F CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf13 B SG CYS 103 F CYS 163 1_555 B SG CYS 136 F CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf14 B SG CYS 107 F CYS 167 1_555 B SG CYS 129 F CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf15 B SG CYS 118 F CYS 178 1_555 B SG CYS 150 F CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc1 A NZ LYS 13 A LYS 13 1_555 E NI NI . A NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc2 A ND1 HIS 36 A HIS 36 1_555 D NI NI . A NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc3 A NE2 HIS 65 A HIS 65 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc4 A NE2 HIS 71 A HIS 71 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc5 C NI NI . A NI 501 1_555 K O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc6 C NI NI . A NI 501 1_555 K O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc7 C NI NI . A NI 501 1_555 K O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc8 C NI NI . A NI 501 1_555 K O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? 
metalc ? metalc9 D NI NI . A NI 502 1_555 K O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc10 D NI NI . A NI 502 1_555 B OE2 GLU 66 F GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc11 D NI NI . A NI 502 1_555 B OE1 GLU 66 F GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc12 D NI NI . A NI 502 1_555 L O HOH . F HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc13 D NI NI . A NI 502 1_555 L O HOH . F HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc14 E NI NI . A NI 503 1_555 K O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2ARP 
_atom_sites.fract_transf_matrix[1][1]    0.012611 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NI A 1 501 1 NI NI . 
D 3 NI A 1 502 2 NI NI . 
E 3 NI A 1 503 3 NI NI . 
F 4 1PG A 1 401 101 1PG 1PG . 
G 5 GOL A 1 303 3 GOL GOL . 
H 5 GOL F 1 301 1 GOL GOL . 
I 5 GOL F 1 302 2 GOL GOL . 
J 5 GOL F 1 304 4 GOL GOL . 
K 6 HOH A 1 504 1 HOH HOH . 
K 6 HOH A 2 505 2 HOH HOH . 
K 6 HOH A 3 506 9 HOH HOH . 
K 6 HOH A 4 507 20 HOH HOH . 
K 6 HOH A 5 508 26 HOH HOH . 
K 6 HOH A 6 509 29 HOH HOH . 
K 6 HOH A 7 510 30 HOH HOH . 
K 6 HOH A 8 511 31 HOH HOH . 
K 6 HOH A 9 512 32 HOH HOH . 
K 6 HOH A 10 513 40 HOH HOH . 
K 6 HOH A 11 514 41 HOH HOH . 
K 6 HOH A 12 515 45 HOH HOH . 
K 6 HOH A 13 516 48 HOH HOH . 
K 6 HOH A 14 517 51 HOH HOH . 
K 6 HOH A 15 518 52 HOH HOH . 
K 6 HOH A 16 519 53 HOH HOH . 
K 6 HOH A 17 520 55 HOH HOH . 
K 6 HOH A 18 521 58 HOH HOH . 
K 6 HOH A 19 522 61 HOH HOH . 
K 6 HOH A 20 523 65 HOH HOH . 
K 6 HOH A 21 524 68 HOH HOH . 
K 6 HOH A 22 525 69 HOH HOH . 
K 6 HOH A 23 526 71 HOH HOH . 
K 6 HOH A 24 527 72 HOH HOH . 
K 6 HOH A 25 528 74 HOH HOH . 
K 6 HOH A 26 529 75 HOH HOH . 
K 6 HOH A 27 530 76 HOH HOH . 
K 6 HOH A 28 531 80 HOH HOH . 
K 6 HOH A 29 532 82 HOH HOH . 
K 6 HOH A 30 533 86 HOH HOH . 
K 6 HOH A 31 534 89 HOH HOH . 
K 6 HOH A 32 535 96 HOH HOH . 
K 6 HOH A 33 536 98 HOH HOH . 
K 6 HOH A 34 537 100 HOH HOH . 
K 6 HOH A 35 538 112 HOH HOH . 
K 6 HOH A 36 539 121 HOH HOH . 
K 6 HOH A 37 540 123 HOH HOH . 
K 6 HOH A 38 541 124 HOH HOH . 
K 6 HOH A 39 542 127 HOH HOH . 
K 6 HOH A 40 543 128 HOH HOH . 
K 6 HOH A 41 544 130 HOH HOH . 
K 6 HOH A 42 545 131 HOH HOH . 
K 6 HOH A 43 546 136 HOH HOH . 
K 6 HOH A 44 547 137 HOH HOH . 
K 6 HOH A 45 548 139 HOH HOH . 
K 6 HOH A 46 549 140 HOH HOH . 
K 6 HOH A 47 550 142 HOH HOH . 
K 6 HOH A 48 551 144 HOH HOH . 
K 6 HOH A 49 552 149 HOH HOH . 
K 6 HOH A 50 553 150 HOH HOH . 
K 6 HOH A 51 554 153 HOH HOH . 
K 6 HOH A 52 555 155 HOH HOH . 
K 6 HOH A 53 556 161 HOH HOH . 
K 6 HOH A 54 557 163 HOH HOH . 
K 6 HOH A 55 558 164 HOH HOH . 
K 6 HOH A 56 559 166 HOH HOH . 
K 6 HOH A 57 560 168 HOH HOH . 
K 6 HOH A 58 561 169 HOH HOH . 
K 6 HOH A 59 562 170 HOH HOH . 
K 6 HOH A 60 563 177 HOH HOH . 
K 6 HOH A 61 564 178 HOH HOH . 
K 6 HOH A 62 565 179 HOH HOH . 
K 6 HOH A 63 566 180 HOH HOH . 
K 6 HOH A 64 567 183 HOH HOH . 
K 6 HOH A 65 568 186 HOH HOH . 
K 6 HOH A 66 569 188 HOH HOH . 
K 6 HOH A 67 570 189 HOH HOH . 
K 6 HOH A 68 571 191 HOH HOH . 
K 6 HOH A 69 572 192 HOH HOH . 
K 6 HOH A 70 573 200 HOH HOH . 
K 6 HOH A 71 574 201 HOH HOH . 
K 6 HOH A 72 575 202 HOH HOH . 
K 6 HOH A 73 576 203 HOH HOH . 
K 6 HOH A 74 577 204 HOH HOH . 
K 6 HOH A 75 578 205 HOH HOH . 
K 6 HOH A 76 579 206 HOH HOH . 
K 6 HOH A 77 580 1 HOH HOH . 
L 6 HOH F 1 305 3 HOH HOH . 
L 6 HOH F 2 306 4 HOH HOH . 
L 6 HOH F 3 307 5 HOH HOH . 
L 6 HOH F 4 308 7 HOH HOH . 
L 6 HOH F 5 309 8 HOH HOH . 
L 6 HOH F 6 310 10 HOH HOH . 
L 6 HOH F 7 311 11 HOH HOH . 
L 6 HOH F 8 312 12 HOH HOH . 
L 6 HOH F 9 313 13 HOH HOH . 
L 6 HOH F 10 314 14 HOH HOH . 
L 6 HOH F 11 315 15 HOH HOH . 
L 6 HOH F 12 316 16 HOH HOH . 
L 6 HOH F 13 317 17 HOH HOH . 
L 6 HOH F 14 318 19 HOH HOH . 
L 6 HOH F 15 319 21 HOH HOH . 
L 6 HOH F 16 320 22 HOH HOH . 
L 6 HOH F 17 321 23 HOH HOH . 
L 6 HOH F 18 322 25 HOH HOH . 
L 6 HOH F 19 323 27 HOH HOH . 
L 6 HOH F 20 324 28 HOH HOH . 
L 6 HOH F 21 325 33 HOH HOH . 
L 6 HOH F 22 326 36 HOH HOH . 
L 6 HOH F 23 327 42 HOH HOH . 
L 6 HOH F 24 328 43 HOH HOH . 
L 6 HOH F 25 329 46 HOH HOH . 
L 6 HOH F 26 330 47 HOH HOH . 
L 6 HOH F 27 331 50 HOH HOH . 
L 6 HOH F 28 332 54 HOH HOH . 
L 6 HOH F 29 333 56 HOH HOH . 
L 6 HOH F 30 334 57 HOH HOH . 
L 6 HOH F 31 335 59 HOH HOH . 
L 6 HOH F 32 336 60 HOH HOH . 
L 6 HOH F 33 337 62 HOH HOH . 
L 6 HOH F 34 338 63 HOH HOH . 
L 6 HOH F 35 339 64 HOH HOH . 
L 6 HOH F 36 340 66 HOH HOH . 
L 6 HOH F 37 341 67 HOH HOH . 
L 6 HOH F 38 342 70 HOH HOH . 
L 6 HOH F 39 343 73 HOH HOH . 
L 6 HOH F 40 344 77 HOH HOH . 
L 6 HOH F 41 345 78 HOH HOH . 
L 6 HOH F 42 346 79 HOH HOH . 
L 6 HOH F 43 347 81 HOH HOH . 
L 6 HOH F 44 348 84 HOH HOH . 
L 6 HOH F 45 349 85 HOH HOH . 
L 6 HOH F 46 350 87 HOH HOH . 
L 6 HOH F 47 351 88 HOH HOH . 
L 6 HOH F 48 352 91 HOH HOH . 
L 6 HOH F 49 353 92 HOH HOH . 
L 6 HOH F 50 354 97 HOH HOH . 
L 6 HOH F 51 355 99 HOH HOH . 
L 6 HOH F 52 356 101 HOH HOH . 
L 6 HOH F 53 357 102 HOH HOH . 
L 6 HOH F 54 358 103 HOH HOH . 
L 6 HOH F 55 359 104 HOH HOH . 
L 6 HOH F 56 360 105 HOH HOH . 
L 6 HOH F 57 361 106 HOH HOH . 
L 6 HOH F 58 362 107 HOH HOH . 
L 6 HOH F 59 363 109 HOH HOH . 
L 6 HOH F 60 364 111 HOH HOH . 
L 6 HOH F 61 365 114 HOH HOH . 
L 6 HOH F 62 366 115 HOH HOH . 
L 6 HOH F 63 367 116 HOH HOH . 
L 6 HOH F 64 368 117 HOH HOH . 
L 6 HOH F 65 369 118 HOH HOH . 
L 6 HOH F 66 370 126 HOH HOH . 
L 6 HOH F 67 371 129 HOH HOH . 
L 6 HOH F 68 372 132 HOH HOH . 
L 6 HOH F 69 373 133 HOH HOH . 
L 6 HOH F 70 374 134 HOH HOH . 
L 6 HOH F 71 375 138 HOH HOH . 
L 6 HOH F 72 376 141 HOH HOH . 
L 6 HOH F 73 377 143 HOH HOH . 
L 6 HOH F 74 378 145 HOH HOH . 
L 6 HOH F 75 379 147 HOH HOH . 
L 6 HOH F 76 380 148 HOH HOH . 
L 6 HOH F 77 381 151 HOH HOH . 
L 6 HOH F 78 382 154 HOH HOH . 
L 6 HOH F 79 383 159 HOH HOH . 
L 6 HOH F 80 384 162 HOH HOH . 
L 6 HOH F 81 385 165 HOH HOH . 
L 6 HOH F 82 386 167 HOH HOH . 
L 6 HOH F 83 387 173 HOH HOH . 
L 6 HOH F 84 388 174 HOH HOH . 
L 6 HOH F 85 389 176 HOH HOH . 
L 6 HOH F 86 390 181 HOH HOH . 
L 6 HOH F 87 391 182 HOH HOH . 
L 6 HOH F 88 392 184 HOH HOH . 
L 6 HOH F 89 393 190 HOH HOH . 
L 6 HOH F 90 394 194 HOH HOH . 
L 6 HOH F 91 395 3 HOH HOH . 
L 6 HOH F 92 396 4 HOH HOH . 
L 6 HOH F 93 397 5 HOH HOH . 
L 6 HOH F 94 398 6 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               15.365 
_atom_site.Cartn_y               15.176 
_atom_site.Cartn_z               40.205 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#