data_2ARV # _model_server_result.job_id BvVMpCar41Z8qlqAzEHlVw _model_server_result.datetime_utc '2024-12-01 02:00:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2arv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":117}' # _entry.id 2ARV # _exptl.entry_id 2ARV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ARV _cell.length_a 63.572 _cell.length_b 96.247 _cell.length_c 118.038 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ARV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 12 A CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? disulf ? disulf2 A SG CYS 11 A CYS 11 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 40 A CYS 40 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf5 A SG CYS 80 A CYS 80 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 B SG CYS 4 B CYS 4 1_555 B SG CYS 12 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 B SG CYS 11 B CYS 11 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 113 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf9 B SG CYS 44 B CYS 44 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C11 H24 O6' _chem_comp.formula_weight 252.305 _chem_comp.id 1PG _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 1PG sing 1 n n C2 C3 1PG sing 2 n n C2 H21 1PG sing 3 n n C2 H22 1PG sing 4 n n C1 O1 1PG sing 5 n n C1 H11 1PG sing 6 n n C1 H12 1PG sing 7 n n C1 H13 1PG sing 8 n n O2 C3 1PG sing 9 n n O2 C4 1PG sing 10 n n C3 H31 1PG sing 11 n n C3 H32 1PG sing 12 n n C4 C5 1PG sing 13 n n C4 H41 1PG sing 14 n n C4 H42 1PG sing 15 n n C5 O3 1PG sing 16 n n C5 H51 1PG sing 17 n n C5 H52 1PG sing 18 n n O3 C6 1PG sing 19 n n C6 C7 1PG sing 20 n n C6 H61 1PG sing 21 n n C6 H62 1PG sing 22 n n C7 O4 1PG sing 23 n n C7 H71 1PG sing 24 n n C7 H72 1PG sing 25 n n O4 C8 1PG sing 26 n n C8 C9 1PG sing 27 n n C8 H81 1PG sing 28 n n C8 H82 1PG sing 29 n n C9 O5 1PG sing 30 n n C9 H91 1PG sing 31 n n C9 H92 1PG sing 32 n n O5 C10 1PG sing 33 n n C10 C11 1PG sing 34 n n C10 H101 1PG sing 35 n n C10 H102 1PG sing 36 n n C11 O6 1PG sing 37 n n C11 H111 1PG sing 38 n n C11 H112 1PG sing 39 n n O6 HO6 1PG sing 40 n n # _atom_sites.entry_id 2ARV _atom_sites.fract_transf_matrix[1][1] 0.01573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 117 1 SO4 SO4 . D 2 SO4 A 1 118 2 SO4 SO4 . E 2 SO4 A 1 119 3 SO4 SO4 . F 2 SO4 A 1 120 4 SO4 SO4 . G 3 GOL A 1 121 5 GOL GOL . H 3 GOL A 1 122 6 GOL GOL . I 3 GOL A 1 123 7 GOL GOL . J 4 1PG B 1 117 8 1PG 1PG . K 5 HOH A 1 124 3 HOH HOH . K 5 HOH A 2 125 4 HOH HOH . K 5 HOH A 3 126 5 HOH HOH . K 5 HOH A 4 127 6 HOH HOH . K 5 HOH A 5 128 8 HOH HOH . K 5 HOH A 6 129 14 HOH HOH . K 5 HOH A 7 130 15 HOH HOH . K 5 HOH A 8 131 16 HOH HOH . K 5 HOH A 9 132 17 HOH HOH . K 5 HOH A 10 133 18 HOH HOH . K 5 HOH A 11 134 19 HOH HOH . K 5 HOH A 12 135 20 HOH HOH . K 5 HOH A 13 136 23 HOH HOH . K 5 HOH A 14 137 24 HOH HOH . K 5 HOH A 15 138 25 HOH HOH . K 5 HOH A 16 139 29 HOH HOH . K 5 HOH A 17 140 31 HOH HOH . K 5 HOH A 18 141 33 HOH HOH . K 5 HOH A 19 142 34 HOH HOH . K 5 HOH A 20 143 35 HOH HOH . K 5 HOH A 21 144 36 HOH HOH . K 5 HOH A 22 145 41 HOH HOH . K 5 HOH A 23 146 43 HOH HOH . K 5 HOH A 24 147 51 HOH HOH . K 5 HOH A 25 148 52 HOH HOH . K 5 HOH A 26 149 53 HOH HOH . K 5 HOH A 27 150 55 HOH HOH . K 5 HOH A 28 151 56 HOH HOH . K 5 HOH A 29 152 58 HOH HOH . K 5 HOH A 30 153 62 HOH HOH . K 5 HOH A 31 154 65 HOH HOH . K 5 HOH A 32 155 66 HOH HOH . K 5 HOH A 33 156 70 HOH HOH . K 5 HOH A 34 157 71 HOH HOH . K 5 HOH A 35 158 72 HOH HOH . K 5 HOH A 36 159 73 HOH HOH . K 5 HOH A 37 160 75 HOH HOH . L 5 HOH B 1 118 7 HOH HOH . L 5 HOH B 2 119 9 HOH HOH . L 5 HOH B 3 120 13 HOH HOH . L 5 HOH B 4 121 22 HOH HOH . L 5 HOH B 5 122 28 HOH HOH . L 5 HOH B 6 123 32 HOH HOH . L 5 HOH B 7 124 37 HOH HOH . L 5 HOH B 8 125 39 HOH HOH . L 5 HOH B 9 126 40 HOH HOH . L 5 HOH B 10 127 44 HOH HOH . L 5 HOH B 11 128 54 HOH HOH . L 5 HOH B 12 129 59 HOH HOH . L 5 HOH B 13 130 67 HOH HOH . L 5 HOH B 14 131 68 HOH HOH . L 5 HOH B 15 132 69 HOH HOH . L 5 HOH B 16 133 76 HOH HOH . L 5 HOH B 17 134 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1PG . . . J 4 0.014 24.86 20.948 1 57.43 ? C2 1PG 117 B 1 HETATM 2 C C1 1PG . . . J 4 0.777 27.008 21.78 1 42.5 ? C1 1PG 117 B 1 HETATM 3 O O1 1PG . . . J 4 1.064 25.559 21.715 1 53.89 ? O1 1PG 117 B 1 HETATM 4 O O2 1PG . . . J 4 -0.951 24.419 18.725 1 69.17 ? O2 1PG 117 B 1 HETATM 5 C C3 1PG . . . J 4 0.177 24.996 19.427 1 65.36 ? C3 1PG 117 B 1 HETATM 6 C C4 1PG . . . J 4 -0.517 23.886 17.442 1 79.48 ? C4 1PG 117 B 1 HETATM 7 C C5 1PG . . . J 4 -1.665 23.856 16.421 1 77.89 ? C5 1PG 117 B 1 HETATM 8 O O3 1PG . . . J 4 -1.192 23.369 15.149 1 78.15 ? O3 1PG 117 B 1 HETATM 9 C C6 1PG . . . J 4 -0.963 24.451 14.221 1 77.28 ? C6 1PG 117 B 1 HETATM 10 C C7 1PG . . . J 4 0.266 24.154 13.344 1 73.55 ? C7 1PG 117 B 1 HETATM 11 O O4 1PG . . . J 4 0.7 25.328 12.608 1 77.29 ? O4 1PG 117 B 1 HETATM 12 C C8 1PG . . . J 4 1.944 25.072 11.888 1 66.95 ? C8 1PG 117 B 1 HETATM 13 C C9 1PG . . . J 4 3.068 24.738 12.868 1 72.96 ? C9 1PG 117 B 1 HETATM 14 O O5 1PG . . . J 4 4.297 25.348 12.441 1 74.94 ? O5 1PG 117 B 1 HETATM 15 C C10 1PG . . . J 4 5.01 25.911 13.561 1 75.39 ? C10 1PG 117 B 1 HETATM 16 C C11 1PG . . . J 4 5.325 27.386 13.262 1 79.14 ? C11 1PG 117 B 1 HETATM 17 O O6 1PG . . . J 4 4.923 28.204 14.377 1 76.05 ? O6 1PG 117 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #