data_2ASF # _model_server_result.job_id oiZpHYwjpiUSIbdVY7dpnQ _model_server_result.datetime_utc '2024-11-28 13:14:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2asf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2ASF # _exptl.entry_id 2ASF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ASF _cell.length_a 73.395 _cell.length_b 73.395 _cell.length_c 44.794 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ASF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 73.395 73.395 22.397 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 24 A ALA 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 25 A MSE 25 1_555 A N LEU 26 A LEU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 C O1 CIT . A CIT 1001 1_555 B NA NA . A NA 1157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 C O7 CIT . A CIT 1001 1_555 B NA NA . A NA 1157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 B NA NA . A NA 1157 1_555 D O3 CIT . A CIT 2001 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 B NA NA . A NA 1157 1_555 D O3 CIT . A CIT 2001 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.638 ? metalc ? metalc5 B NA NA . A NA 1157 1_555 E O HOH . A HOH 2057 8_666 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 B NA NA . A NA 1157 1_555 E O HOH . A HOH 2128 8_666 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 2ASF _atom_sites.fract_transf_matrix[1][1] 0.013625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1157 157 NA NA . C 3 CIT A 1 1001 1 CIT CIT . D 3 CIT A 1 2001 1 CIT CIT . E 4 HOH A 1 2002 1 HOH HOH . E 4 HOH A 2 2003 2 HOH HOH . E 4 HOH A 3 2004 3 HOH HOH . E 4 HOH A 4 2005 4 HOH HOH . E 4 HOH A 5 2006 5 HOH HOH . E 4 HOH A 6 2007 6 HOH HOH . E 4 HOH A 7 2008 7 HOH HOH . E 4 HOH A 8 2009 8 HOH HOH . E 4 HOH A 9 2010 9 HOH HOH . E 4 HOH A 10 2011 10 HOH HOH . E 4 HOH A 11 2012 11 HOH HOH . E 4 HOH A 12 2013 12 HOH HOH . E 4 HOH A 13 2014 13 HOH HOH . E 4 HOH A 14 2015 14 HOH HOH . E 4 HOH A 15 2016 15 HOH HOH . E 4 HOH A 16 2017 16 HOH HOH . E 4 HOH A 17 2018 17 HOH HOH . E 4 HOH A 18 2019 18 HOH HOH . E 4 HOH A 19 2020 19 HOH HOH . E 4 HOH A 20 2021 20 HOH HOH . E 4 HOH A 21 2022 21 HOH HOH . E 4 HOH A 22 2023 22 HOH HOH . E 4 HOH A 23 2024 23 HOH HOH . E 4 HOH A 24 2025 24 HOH HOH . E 4 HOH A 25 2026 25 HOH HOH . E 4 HOH A 26 2027 26 HOH HOH . E 4 HOH A 27 2028 27 HOH HOH . E 4 HOH A 28 2029 28 HOH HOH . E 4 HOH A 29 2030 29 HOH HOH . E 4 HOH A 30 2031 30 HOH HOH . E 4 HOH A 31 2032 31 HOH HOH . E 4 HOH A 32 2033 32 HOH HOH . E 4 HOH A 33 2034 33 HOH HOH . E 4 HOH A 34 2035 34 HOH HOH . E 4 HOH A 35 2036 35 HOH HOH . E 4 HOH A 36 2037 36 HOH HOH . E 4 HOH A 37 2038 37 HOH HOH . E 4 HOH A 38 2039 38 HOH HOH . E 4 HOH A 39 2040 39 HOH HOH . E 4 HOH A 40 2041 40 HOH HOH . E 4 HOH A 41 2042 41 HOH HOH . E 4 HOH A 42 2043 42 HOH HOH . E 4 HOH A 43 2044 43 HOH HOH . E 4 HOH A 44 2045 44 HOH HOH . E 4 HOH A 45 2046 45 HOH HOH . E 4 HOH A 46 2047 46 HOH HOH . E 4 HOH A 47 2048 47 HOH HOH . E 4 HOH A 48 2049 48 HOH HOH . E 4 HOH A 49 2050 49 HOH HOH . E 4 HOH A 50 2051 50 HOH HOH . E 4 HOH A 51 2052 51 HOH HOH . E 4 HOH A 52 2053 52 HOH HOH . E 4 HOH A 53 2054 53 HOH HOH . E 4 HOH A 54 2055 54 HOH HOH . E 4 HOH A 55 2056 55 HOH HOH . E 4 HOH A 56 2057 56 HOH HOH . E 4 HOH A 57 2058 57 HOH HOH . E 4 HOH A 58 2059 58 HOH HOH . E 4 HOH A 59 2060 59 HOH HOH . E 4 HOH A 60 2061 60 HOH HOH . E 4 HOH A 61 2062 61 HOH HOH . E 4 HOH A 62 2063 62 HOH HOH . E 4 HOH A 63 2064 63 HOH HOH . E 4 HOH A 64 2065 64 HOH HOH . E 4 HOH A 65 2066 65 HOH HOH . E 4 HOH A 66 2067 66 HOH HOH . E 4 HOH A 67 2068 67 HOH HOH . E 4 HOH A 68 2069 68 HOH HOH . E 4 HOH A 69 2070 69 HOH HOH . E 4 HOH A 70 2071 70 HOH HOH . E 4 HOH A 71 2072 71 HOH HOH . E 4 HOH A 72 2073 72 HOH HOH . E 4 HOH A 73 2074 73 HOH HOH . E 4 HOH A 74 2075 74 HOH HOH . E 4 HOH A 75 2076 75 HOH HOH . E 4 HOH A 76 2077 76 HOH HOH . E 4 HOH A 77 2078 77 HOH HOH . E 4 HOH A 78 2079 78 HOH HOH . E 4 HOH A 79 2080 79 HOH HOH . E 4 HOH A 80 2081 80 HOH HOH . E 4 HOH A 81 2082 81 HOH HOH . E 4 HOH A 82 2083 82 HOH HOH . E 4 HOH A 83 2084 83 HOH HOH . E 4 HOH A 84 2085 84 HOH HOH . E 4 HOH A 85 2086 85 HOH HOH . E 4 HOH A 86 2087 86 HOH HOH . E 4 HOH A 87 2088 87 HOH HOH . E 4 HOH A 88 2089 88 HOH HOH . E 4 HOH A 89 2090 89 HOH HOH . E 4 HOH A 90 2091 90 HOH HOH . E 4 HOH A 91 2092 91 HOH HOH . E 4 HOH A 92 2093 92 HOH HOH . E 4 HOH A 93 2094 93 HOH HOH . E 4 HOH A 94 2095 94 HOH HOH . E 4 HOH A 95 2096 95 HOH HOH . E 4 HOH A 96 2097 96 HOH HOH . E 4 HOH A 97 2098 97 HOH HOH . E 4 HOH A 98 2099 98 HOH HOH . E 4 HOH A 99 2100 99 HOH HOH . E 4 HOH A 100 2101 100 HOH HOH . E 4 HOH A 101 2102 101 HOH HOH . E 4 HOH A 102 2103 102 HOH HOH . E 4 HOH A 103 2104 103 HOH HOH . E 4 HOH A 104 2105 104 HOH HOH . E 4 HOH A 105 2106 105 HOH HOH . E 4 HOH A 106 2107 106 HOH HOH . E 4 HOH A 107 2108 107 HOH HOH . E 4 HOH A 108 2109 108 HOH HOH . E 4 HOH A 109 2110 109 HOH HOH . E 4 HOH A 110 2111 110 HOH HOH . E 4 HOH A 111 2112 111 HOH HOH . E 4 HOH A 112 2113 112 HOH HOH . E 4 HOH A 113 2114 113 HOH HOH . E 4 HOH A 114 2115 114 HOH HOH . E 4 HOH A 115 2116 115 HOH HOH . E 4 HOH A 116 2117 116 HOH HOH . E 4 HOH A 117 2118 117 HOH HOH . E 4 HOH A 118 2119 118 HOH HOH . E 4 HOH A 119 2120 119 HOH HOH . E 4 HOH A 120 2121 120 HOH HOH . E 4 HOH A 121 2122 121 HOH HOH . E 4 HOH A 122 2123 122 HOH HOH . E 4 HOH A 123 2124 123 HOH HOH . E 4 HOH A 124 2125 124 HOH HOH . E 4 HOH A 125 2126 125 HOH HOH . E 4 HOH A 126 2127 126 HOH HOH . E 4 HOH A 127 2128 127 HOH HOH . E 4 HOH A 128 2129 128 HOH HOH . E 4 HOH A 129 2130 129 HOH HOH . E 4 HOH A 130 2131 130 HOH HOH . E 4 HOH A 131 2132 131 HOH HOH . E 4 HOH A 132 2133 132 HOH HOH . E 4 HOH A 133 2134 133 HOH HOH . E 4 HOH A 134 2135 134 HOH HOH . E 4 HOH A 135 2136 135 HOH HOH . E 4 HOH A 136 2137 136 HOH HOH . E 4 HOH A 137 2138 137 HOH HOH . E 4 HOH A 138 2139 138 HOH HOH . E 4 HOH A 139 2140 139 HOH HOH . E 4 HOH A 140 2141 140 HOH HOH . E 4 HOH A 141 2142 141 HOH HOH . E 4 HOH A 142 2143 142 HOH HOH . E 4 HOH A 143 2144 143 HOH HOH . E 4 HOH A 144 2145 144 HOH HOH . E 4 HOH A 145 2146 145 HOH HOH . E 4 HOH A 146 2147 146 HOH HOH . E 4 HOH A 147 2148 147 HOH HOH . E 4 HOH A 148 2149 148 HOH HOH . E 4 HOH A 149 2150 149 HOH HOH . E 4 HOH A 150 2151 150 HOH HOH . E 4 HOH A 151 2152 151 HOH HOH . E 4 HOH A 152 2153 152 HOH HOH . E 4 HOH A 153 2154 153 HOH HOH . E 4 HOH A 154 2155 154 HOH HOH . E 4 HOH A 155 2156 155 HOH HOH . E 4 HOH A 156 2157 156 HOH HOH . E 4 HOH A 157 2158 157 HOH HOH . E 4 HOH A 158 2159 158 HOH HOH . E 4 HOH A 159 2160 159 HOH HOH . E 4 HOH A 160 2161 160 HOH HOH . E 4 HOH A 161 2162 161 HOH HOH . E 4 HOH A 162 2163 162 HOH HOH . E 4 HOH A 163 2164 163 HOH HOH . E 4 HOH A 164 2165 164 HOH HOH . E 4 HOH A 165 2166 165 HOH HOH . E 4 HOH A 166 2167 166 HOH HOH . E 4 HOH A 167 2168 167 HOH HOH . E 4 HOH A 168 2169 168 HOH HOH . E 4 HOH A 169 2170 169 HOH HOH . E 4 HOH A 170 2171 170 HOH HOH . E 4 HOH A 171 2172 171 HOH HOH . E 4 HOH A 172 2173 172 HOH HOH . E 4 HOH A 173 2174 173 HOH HOH . E 4 HOH A 174 2175 174 HOH HOH . E 4 HOH A 175 2176 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 26.98 48.928 30.572 1 15.67 ? C1 CIT 1001 A 1 HETATM 2 O O1 CIT . . . C 3 27.993 48.784 29.844 1 15.97 ? O1 CIT 1001 A 1 HETATM 3 O O2 CIT . . . C 3 26.843 48.365 31.678 1 16.12 ? O2 CIT 1001 A 1 HETATM 4 C C2 CIT . . . C 3 25.857 49.826 30.088 1 13.68 ? C2 CIT 1001 A 1 HETATM 5 C C3 CIT . . . C 3 25.288 49.353 28.735 1 12.76 ? C3 CIT 1001 A 1 HETATM 6 O O7 CIT . . . C 3 26.127 49.734 27.63 1 11.53 ? O7 CIT 1001 A 1 HETATM 7 C C4 CIT . . . C 3 25.003 47.843 28.724 1 13.27 ? C4 CIT 1001 A 1 HETATM 8 C C5 CIT . . . C 3 24.427 47.341 27.409 1 15.28 ? C5 CIT 1001 A 1 HETATM 9 O O3 CIT . . . C 3 23.512 47.985 26.844 1 12.88 ? O3 CIT 1001 A 1 HETATM 10 O O4 CIT . . . C 3 24.927 46.3 26.926 1 17.57 ? O4 CIT 1001 A 1 HETATM 11 C C6 CIT . . . C 3 24.057 50.158 28.499 1 11.44 ? C6 CIT 1001 A 1 HETATM 12 O O5 CIT . . . C 3 23.084 50 29.245 1 11.73 ? O5 CIT 1001 A 1 HETATM 13 O O6 CIT . . . C 3 24.087 50.964 27.538 1 10.47 ? O6 CIT 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #