data_2ASS # _model_server_result.job_id cItKUWKeoUDdIbTkRCtfvA _model_server_result.datetime_utc '2024-12-25 02:42:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ass # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2}' # _entry.id 2ASS # _exptl.entry_id 2ASS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ASS _cell.length_a 149.332 _cell.length_b 149.332 _cell.length_c 99.916 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ASS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 C,G,H,K 3 3,4 A,B,D,E,F,I,J 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 66.610667 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 74.666 -129.325306 33.305333 4 'crystal symmetry operation' 5_545 x-y,-y-1,-z+1/3 1 0 0 0 -1 0 0 0 -1 74.666 -129.325306 33.305333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 H N N # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 2ASS _atom_sites.fract_transf_matrix[1][1] 0.006696 _atom_sites.fract_transf_matrix[1][2] 0.003866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 B 1 3 3 PO4 PO4 . E 4 PO4 B 1 5 5 PO4 PO4 . F 5 BEN B 1 1 1 BEN BAM . G 4 PO4 C 1 4 4 PO4 PO4 . H 5 BEN C 1 2 2 BEN BAM . I 6 HOH A 1 11 11 HOH HOH . I 6 HOH A 2 29 29 HOH HOH . I 6 HOH A 3 33 33 HOH HOH . I 6 HOH A 4 34 34 HOH HOH . I 6 HOH A 5 45 45 HOH HOH . I 6 HOH A 6 52 52 HOH HOH . I 6 HOH A 7 69 69 HOH HOH . J 6 HOH B 1 6 6 HOH HOH . J 6 HOH B 2 7 7 HOH HOH . J 6 HOH B 3 8 8 HOH HOH . J 6 HOH B 4 9 9 HOH HOH . J 6 HOH B 5 10 10 HOH HOH . J 6 HOH B 6 13 13 HOH HOH . J 6 HOH B 7 14 14 HOH HOH . J 6 HOH B 8 15 15 HOH HOH . J 6 HOH B 9 16 16 HOH HOH . J 6 HOH B 10 17 17 HOH HOH . J 6 HOH B 11 18 18 HOH HOH . J 6 HOH B 12 19 19 HOH HOH . J 6 HOH B 13 21 21 HOH HOH . J 6 HOH B 14 22 22 HOH HOH . J 6 HOH B 15 23 23 HOH HOH . J 6 HOH B 16 24 24 HOH HOH . J 6 HOH B 17 25 25 HOH HOH . J 6 HOH B 18 26 26 HOH HOH . J 6 HOH B 19 27 27 HOH HOH . J 6 HOH B 20 28 28 HOH HOH . J 6 HOH B 21 30 30 HOH HOH . J 6 HOH B 22 31 31 HOH HOH . J 6 HOH B 23 32 32 HOH HOH . J 6 HOH B 24 38 38 HOH HOH . J 6 HOH B 25 40 40 HOH HOH . J 6 HOH B 26 41 41 HOH HOH . J 6 HOH B 27 43 43 HOH HOH . J 6 HOH B 28 44 44 HOH HOH . J 6 HOH B 29 46 46 HOH HOH . J 6 HOH B 30 47 47 HOH HOH . J 6 HOH B 31 48 48 HOH HOH . J 6 HOH B 32 49 49 HOH HOH . J 6 HOH B 33 50 50 HOH HOH . J 6 HOH B 34 51 51 HOH HOH . J 6 HOH B 35 53 53 HOH HOH . J 6 HOH B 36 54 54 HOH HOH . J 6 HOH B 37 55 55 HOH HOH . J 6 HOH B 38 56 56 HOH HOH . J 6 HOH B 39 57 57 HOH HOH . J 6 HOH B 40 58 58 HOH HOH . J 6 HOH B 41 59 59 HOH HOH . J 6 HOH B 42 60 60 HOH HOH . J 6 HOH B 43 61 61 HOH HOH . J 6 HOH B 44 62 62 HOH HOH . J 6 HOH B 45 63 63 HOH HOH . J 6 HOH B 46 66 66 HOH HOH . J 6 HOH B 47 67 67 HOH HOH . J 6 HOH B 48 68 68 HOH HOH . J 6 HOH B 49 70 70 HOH HOH . J 6 HOH B 50 71 71 HOH HOH . K 6 HOH C 1 12 12 HOH HOH . K 6 HOH C 2 20 20 HOH HOH . K 6 HOH C 3 35 35 HOH HOH . K 6 HOH C 4 36 36 HOH HOH . K 6 HOH C 5 37 37 HOH HOH . K 6 HOH C 6 39 39 HOH HOH . K 6 HOH C 7 42 42 HOH HOH . K 6 HOH C 8 64 64 HOH HOH . K 6 HOH C 9 65 65 HOH HOH . K 6 HOH C 10 72 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . H 5 5.482 -82.689 16.76 1 76.16 ? C1 BEN 2 C 1 HETATM 2 C C2 BEN . . . H 5 4.858 -81.638 16.028 1 76.87 ? C2 BEN 2 C 1 HETATM 3 C C3 BEN . . . H 5 4.967 -81.529 14.641 1 78.44 ? C3 BEN 2 C 1 HETATM 4 C C4 BEN . . . H 5 5.715 -82.458 13.894 1 79.04 ? C4 BEN 2 C 1 HETATM 5 C C5 BEN . . . H 5 6.336 -83.502 14.613 1 77.94 ? C5 BEN 2 C 1 HETATM 6 C C6 BEN . . . H 5 6.22 -83.594 15.963 1 77.16 ? C6 BEN 2 C 1 HETATM 7 C C BEN . . . H 5 5.349 -82.774 18.184 1 75.38 ? C BEN 2 C 1 HETATM 8 N N1 BEN . . . H 5 4.404 -82.14 18.88 1 73.95 ? N1 BEN 2 C 1 HETATM 9 N N2 BEN . . . H 5 6.198 -83.539 18.937 1 73.75 ? N2 BEN 2 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #